mRNA_E-siliculosus-1a_F_contig1003.86.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1003.86.1 vs. uniprot
Match: D8LDS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS9_ECTSI) HSP 1 Score: 1260 bits (3261), Expect = 0.000e+0 Identity = 706/877 (80.50%), Postives = 718/877 (81.87%), Query Frame = 1 Query: 1 MGKGKPCASKTEGVCATDAATAYKQGLKLCGEGAYGRALCLFDRAIAFRVDCSHYFAARANCKQAMGKFVDAYHDYVSAIRLNASKCTXXXXXXXXXXXXXXXXXXXXXXXXXCELEPTVAVHHYQRASLLHHRLARPGQAEISYGECLANTGEFDSAMTLRCLHAKGACLFEEGRAEEAVADLSRAVEMSDPSPASLHYLAKALKAVGQEKRALTVLGEALKKWEHMAPAAQLGGGPSSDNTGRHEAFFDRGVIRLGRGDDAGALLDFNKAVELSNGGRGEYFVQRARARARVAMRSEGREEAMAGVEDIEKAMELESNNPEFLFTAGVLCSRMGEYERAMGHLQLLLRSFDKQEAACTSREKTETGNKDVASRAACEFENFTASIAVNGQQPEGFLLRGRSLAGLSRQGQFQRDQAHEQAIRDFTMALSILGSKTACGFRTKSL-GGADGCIRDDSVSQRKDEAKGDEKEIDARNTKPEQDSDTKGNRTNPDVMLSENCSPRVEHNRAGADPQEASPAETKQPESHGAEGRLEESREASCRRDSRSGEVGDGMGEGGSVVGACHYARALSLQQLGRHADAVTDFNVAISEGPVSWQRFWHRATCLVELGEAYRTSAARDLRACMSMAEKGEPPPEMRNFLFQVGLAYLRLGRFALALELFDRAWKEEVRLLEQRDTKTDGPTDLGQPSPVVSVDGQIEDASLHYHRGLCLVNAGDLDDAHDAFSLAIEGRNPRGPRRPNEWGLSCVEDVANVARSAYHRERGKVRQLLRDFDGARSDFTACLASLPGKPQSKMNNCVHAAIGSGSGSSQQAHTLFRRGWSNKALGNLEEAAADFEAARLLNPHLSVNYRNAFDTELVVVDDGKPFTQPPALFHSW 2628
MGKGK ASKTEGVCATDAATAY QGLKLCGEGAYG+ALC FDRAIAFRVDCSHYFAARANCKQAMGKFVDAYHDYVSAIRLNASKCTXXXXXXXXXXXXXXXXXXXXXXXXXCELEPTVAVHHYQRASLLHHRLARPGQA ISYGECLANTGEFDSAMTLRCLHAKGACLFEEGRAEEAVADLSRAVEMSDPSPASL YLAKALKAVGQEKRALTVLGEALKKWEHMAPAAQLGGGPSSDNTGRHEAFFDRGVIRLG GDDAGALLDFNKAVELSNGGRGEYFVQRARARARVAMRSEGREEAMAGVEDIEKAMELESNNPEFLFTAGVLCSRMGEYERAMGHLQLLLRSFDKQEAA T REKTETGNKDVASRAACEFENFTASIAVNGQ+PEGFLLRGRSLAGLS +HEQAIRDFT ALSILGSK+A RT SL GGADGC RDDSVSQRKDEAKGDEKE+DARN KPEQD DTKGNRTNP+VMLSE CSPRVE+NRAG DP EASPAETK PESHG EG LEESREASCRRDSRSGEVGDGMGEGGSVVGACHYARALSLQQLGRHADAVTDF+VAISEGPVSWQRFWHRATCLV LGEAYR SA RDLRACMSMAEKGEPPPEMRNFLFQVGLAYLRLGRFALALELFD+AWKEEVRL EQRDTKT+GPTDLG SS QAHTLFRRGW+NKA+GNLEEAAADFEAARLLNPHLSVNYRNAFDTELVVVDDGKPFTQPPALFHSW
Sbjct: 1 MGKGKQGASKTEGVCATDAATAYNQGLKLCGEGAYGKALCSFDRAIAFRVDCSHYFAARANCKQAMGKFVDAYHDYVSAIRLNASKCTXXXXXXXXXXXXXXXXXXXXXXXXXCELEPTVAVHHYQRASLLHHRLARPGQAVISYGECLANTGEFDSAMTLRCLHAKGACLFEEGRAEEAVADLSRAVEMSDPSPASLQYLAKALKAVGQEKRALTVLGEALKKWEHMAPAAQLGGGPSSDNTGRHEAFFDRGVIRLGHGDDAGALLDFNKAVELSNGGRGEYFVQRARARARVAMRSEGREEAMAGVEDIEKAMELESNNPEFLFTAGVLCSRMGEYERAMGHLQLLLRSFDKQEAAST-REKTETGNKDVASRAACEFENFTASIAVNGQRPEGFLLRGRSLAGLS---------SHEQAIRDFTTALSILGSKSARSSRTTSLLGGADGCCRDDSVSQRKDEAKGDEKEVDARNAKPEQDGDTKGNRTNPEVMLSETCSPRVEYNRAGTDPHEASPAETKHPESHGDEGHLEESREASCRRDSRSGEVGDGMGEGGSVVGACHYARALSLQQLGRHADAVTDFDVAISEGPVSWQRFWHRATCLVGLGEAYRASAVRDLRACMSMAEKGEPPPEMRNFLFQVGLAYLRLGRFALALELFDQAWKEEVRLPEQRDTKTEGPTDLG-------------------------------------------------------------------------------------------------------------------------SSLQAHTLFRRGWANKAMGNLEEAAADFEAARLLNPHLSVNYRNAFDTELVVVDDGKPFTQPPALFHSW 746
BLAST of mRNA_E-siliculosus-1a_F_contig1003.86.1 vs. uniprot
Match: A0A5D6XF25_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XF25_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.480e-7 Identity = 57/162 (35.19%), Postives = 75/162 (46.30%), Query Frame = 1 Query: 2107 LHYHRGLCLVNAGDLDDAHDAFSLAIEGRNPRGPRRPNEWGLSCVEDVANVARSA-YHRERGKVRQLLRDFDGARSDFTACLASLPGKPQSKMNNCVHAAIGSGSGSSQQAHTLFRRGWSNKALGNLEEAAADFEAARLLNP---HLSVNYRNAFDTELVVV 2580
+ YH GL A ++F+ A+E R S E A +A Y ER K QL R +D A +DF+ LA P NN AH FRRG+++KA G+L AAADFEAA++L+P L VNY DTE V++
Sbjct: 632 VFYHIGLSCALESRHMAAIESFTAALEHS------RALSAASSASERAALLAAQLRYVHERAKALQLERYYDEAVADFSFVLAHNP-------NN---------------AHACFRRGFAHKARGDLAAAAADFEAAKMLDPTNLQLVVNYHELRDTECVIL 765 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1003.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1003.86.1 >prot_E-siliculosus-1a_F_contig1003.86.1 ID=prot_E-siliculosus-1a_F_contig1003.86.1|Name=mRNA_E-siliculosus-1a_F_contig1003.86.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=877bp MGKGKPCASKTEGVCATDAATAYKQGLKLCGEGAYGRALCLFDRAIAFRVback to top mRNA from alignment at E-siliculosus-1a_F_contig1003:20210..31290+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1003.86.1 ID=mRNA_E-siliculosus-1a_F_contig1003.86.1|Name=mRNA_E-siliculosus-1a_F_contig1003.86.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11081bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1003:20210..31290+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1003:20210..31290+ >mRNA_E-siliculosus-1a_F_contig1003.86.1 ID=mRNA_E-siliculosus-1a_F_contig1003.86.1|Name=mRNA_E-siliculosus-1a_F_contig1003.86.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5262bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1003:20210..31290+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |