mRNA_E-siliculosus-1a_F_contig1002.79.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1002.79.1
Unique NamemRNA_E-siliculosus-1a_F_contig1002.79.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7FI89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI89_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.420e-24
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTCE  +PWDDD+D  CS    GFACIDPAAPCV+DDDITAVMVEN
Sbjct:    3 GYDGGDCCECTCE--SPWDDDNDWLCSSDGSGFACIDPAAPCVEDDDITAVMVEN 55
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BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.530e-19
Identity = 43/60 (71.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 GYDGGDCCECTCEV-----GNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTC        +PWDDDDD  CS    GFACIDPAAPCV+DDDITA MVEN
Sbjct:   74 GYDGGDCCECTCVACKKHGQSPWDDDDDWLCSSGGSGFACIDPAAPCVEDDDITADMVEN 133
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BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 8.770e-19
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTC+  NPW DDD+  CS   YGFACIDP APCVDDDDIT  + +N
Sbjct:   44 GYDGGDCCECTCQ--NPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQN 96
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BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.930e-17
Identity = 38/55 (69.09%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTC   NPW DDDD  CS    GFACIDP A CVDDDDIT  + +N
Sbjct:   20 GYDGGDCCECTCV--NPWGDDDDWVCSKDGSGFACIDPDASCVDDDDITVEIAQN 72
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BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 8.260e-16
Identity = 40/57 (70.18%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 GYDGGDCCECTCEVGNP--WDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTCE  +P  WDDD D  C      FACIDP+APCVDDDDIT  MVEN
Sbjct:  214 GYDGGDCCECTCEYESPYDWDDDWDYHCME----FACIDPSAPCVDDDDITVDMVEN 266
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BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7FI92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI92_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 3.650e-13
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 GYDGGDCCECTCEVGNP-WDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTC+V N  W         + +Y FACID  APCVDDDDITA MVEN
Sbjct:    8 GYDGGDCCECTCQVTNSGWG-------CNPDY-FACIDLEAPCVDDDDITAEMVEN 55
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BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 7.040e-13
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTC   N WDDD   +C+  +   ACIDP+APCVDDDD+T  MVEN
Sbjct:   76 GYDGGDCCECTCV--NAWDDD--YSCAANS---ACIDPSAPCVDDDDVTVDMVEN 123
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BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.050e-12
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 GYDGGDCCECTCEVGNP--WDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTCE  +P  WDDD D  C      F+CIDP A CV DDDIT  M EN
Sbjct:  114 GYDGGDCCECTCEYESPYDWDDDWDYHCRE----FSCIDPNAACVSDDDITVDMFEN 166
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BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: A0A6H5K2J7_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.690e-12
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTC+  +  DDD  S   +++Y  ACIDP A CVDDDD+TA MVEN
Sbjct:   51 GYDGGDCCECTCQTQS--DDDYYSWGCNKDY-MACIDPDASCVDDDDVTAEMVEN 102
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.800e-12
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 GYDGGDCCECTCEV--GNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTCEV   + WD+D    C     GFACIDP+APCV+DDDIT  + E+
Sbjct:  124 GYDGGDCCECTCEVPTDDDWDNDLYVACGE---GFACIDPSAPCVNDDDITVDVDES 177
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI89_ECTSI1.420e-2480.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE2.530e-1971.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI87_ECTSI8.770e-1970.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR2_9PHAE6.930e-1769.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F4_ECTSI8.260e-1670.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI92_ECTSI3.650e-1364.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S4_ECTSI7.040e-1365.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB04_9PHAE2.050e-1263.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2J7_9PHAE2.690e-1263.64LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4F9_ECTSI3.800e-1261.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1002contigE-siliculosus-1a_F_contig1002:18785..20351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size165
Model size165
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927507.44819-CDS-E-siliculosus-1a_F_contig1002:18784..188311622927507.44819-CDS-E-siliculosus-1a_F_contig1002:18784..18831Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1002 18785..18831 +
1696318557.8412826-CDS-E-siliculosus-1a_F_contig1002:18784..188311696318557.8412826-CDS-E-siliculosus-1a_F_contig1002:18784..18831Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1002 18785..18831 +
1622927507.466888-CDS-E-siliculosus-1a_F_contig1002:20233..203511622927507.466888-CDS-E-siliculosus-1a_F_contig1002:20233..20351Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1002 20234..20351 +
1696318557.8492184-CDS-E-siliculosus-1a_F_contig1002:20233..203511696318557.8492184-CDS-E-siliculosus-1a_F_contig1002:20233..20351Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1002 20234..20351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1002.79.1prot_E-siliculosus-1a_F_contig1002.79.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1002 18785..20351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1002.79.1

>prot_E-siliculosus-1a_F_contig1002.79.1 ID=prot_E-siliculosus-1a_F_contig1002.79.1|Name=mRNA_E-siliculosus-1a_F_contig1002.79.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=55bp
GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITA
VMVEN
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mRNA from alignment at E-siliculosus-1a_F_contig1002:18785..20351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1002.79.1 ID=mRNA_E-siliculosus-1a_F_contig1002.79.1|Name=mRNA_E-siliculosus-1a_F_contig1002.79.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1567bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1002:18785..20351+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCTACGACGGGGGCGACTGCTGCGAGTGCACGTGTGAGGTAGGCAAGTC
GAAAAGCAAGTGGAAGTTCTAAAGAGTTCATCCTTTGGGCCCTGTCGCCA
TGGAATCTATCTCCAGTTATCTGCTCTGAATAACTGCGTCGCAATTCTGA
AAACTCTATTGTACGCGAGGGACTTTTGCAATTCTGCCGTCTCACATGTG
TGGTGAAGTACATAATTGGCACGGTTTCTCACGGTTTCTCACGTTCAGTA
GCAGCAGTAGGTCTGCAGAAACAGAGACAACAGTCTAGTATCCAATGAAC
GACACGAAGATTTGAACCATTATTGCGTTTGCACGTGCTCTGTACTCTCT
GCCGTCAGGTACCGGTCAGACCCCCTTTACTGACCGGCAACATACCGTAA
ACCAGCAATCCGCTTTACCGACCAGTAAATTACCGCAAGAAGCGGGGATG
ACAAACAACTGTCCCCGGGGTTTCCAGTCGTTTCGTTCATTTGTGCTGTG
TGCCGACCGGAGCTCTGGTACACCACCCCAAACAGCAGTAGTGTTGCGTT
GATGCTGTGACCCATCAACAAATTGATGGCGTGCGGCACCTTAAAAGTGT
ACCGAACCCGAAACCAGCAGTGAATGAATGTGTTGTTGAACAAGGTTCTT
GCAAAGATGTGTGTAGGCATGTTAGTTGGTTTCGGCGGGTGAGCAGGATG
CAGGAAGGTTGCCCATTCGAGTGGCTCACCCCTCGTCTACAGCTCCACAT
CATTTATCAACAACAAAGAGAAGAAAACAATCACAAAAGCCAGATGAAGG
CCCCTTGTTGAAATGTTTATCACGTACGTTCCCGTACATGCGTGGTCTCC
GCATCTGTTCCCCGAAGAACCGACGGCAAACTCAAAACAGGAGTGCTCGA
AAGCGAGCCCCAAGAATCCGTTGGTTTTGCGGTGCCTGAATGTCTGTGGC
CTGCTGCAGATAAGCTAAGCTCTGACCTCGAGAGAGACTCAATGTGGAGT
GTGGAAAGCTGCAGCAGCTGCTTCCCCCGCAAGGCAGGGACTGAGGGGGG
GGCGCAAATGGGGGTGGGGGTGTGCCGAGAATGTCGAGAATTACCTCTAT
TTTTGACTTGACCGACCCTGCCAACCCTTTACAGGTAAAGGTACTGGTCA
AGGGTAACTGACATCCTTGGTTTCCTACTGACCTCGCTACCGCTCTGTGT
GCCATACTCCATCCTCGCGCGGACGCGTGGTCCATGGCCTAACATCTAGG
GCATGCGAAAGATGAGTACCCCCCCCCCCCTACTGTCCTCTCTAGTACTC
GGAAACGCAAGTTCCTCCTGCTACAGCCAAGGCGAGTCCTGCCTGGCTTG
TCACGTGCTTCCTTGATCCCTGACCTCCCGTCCATCCCGCCTTCCTCATT
CCTGAACACGTACTGGTCTTGGTCTGACCTGCTCACGCATGTGCCAGAGC
CCATGGGACGACGACGACGACTCGACTTGCTCCCACCAAAATTACGGGTT
TGCCTGCATCGACCCCGCAGCACCGTGTGTTGACGATGACGATATCACCG
CCGTGATGGTGGAGAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1002:18785..20351+

>mRNA_E-siliculosus-1a_F_contig1002.79.1 ID=mRNA_E-siliculosus-1a_F_contig1002.79.1|Name=mRNA_E-siliculosus-1a_F_contig1002.79.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1002:18785..20351+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCTACGACGGGGGCGACTGCTGCGAGTGCACGTGTGAGGTAGGCAAGGC
TACGACGGGGGCGACTGCTGCGAGTGCACGTGTGAGGTAGGCAACCCATG
GGACGACGACGACGACTCGACTTGCTCCCACCAAAATTACGGGTTTGCCT
GCATCGACCCCGCAGCACCGTGTGTTGACGATGACGATATCACCGCCGTG
ATGGTGGAGAACCCCATGGGACGACGACGACGACTCGACTTGCTCCCACC
AAAATTACGGGTTTGCCTGCATCGACCCCGCAGCACCGTGTGTTGACGAT
GACGATATCACCGCCGTGATGGTGGAGAAC
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