mRNA_E-siliculosus-1a_F_contig1002.79.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7FI89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI89_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.420e-24
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1

Query:    1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTCE  +PWDDD+D  CS    GFACIDPAAPCV+DDDITAVMVEN
Sbjct:    3 GYDGGDCCECTCE--SPWDDDNDWLCSSDGSGFACIDPAAPCVEDDDITAVMVEN 55

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BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.530e-19
Identity = 43/60 (71.67%), Postives = 45/60 (75.00%), Query Frame = 1

Query:    1 GYDGGDCCECTCEV-----GNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTC        +PWDDDDD  CS    GFACIDPAAPCV+DDDITA MVEN
Sbjct:   74 GYDGGDCCECTCVACKKHGQSPWDDDDDWLCSSGGSGFACIDPAAPCVEDDDITADMVEN 133

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BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 8.770e-19
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 1

Query:    1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTC+  NPW DDD+  CS   YGFACIDP APCVDDDDIT  + +N
Sbjct:   44 GYDGGDCCECTCQ--NPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQN 96

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BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.930e-17
Identity = 38/55 (69.09%), Postives = 40/55 (72.73%), Query Frame = 1

Query:    1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTC   NPW DDDD  CS    GFACIDP A CVDDDDIT  + +N
Sbjct:   20 GYDGGDCCECTCV--NPWGDDDDWVCSKDGSGFACIDPDASCVDDDDITVEIAQN 72

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 8.260e-16
Identity = 40/57 (70.18%), Postives = 42/57 (73.68%), Query Frame = 1

Query:    1 GYDGGDCCECTCEVGNP--WDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTCE  +P  WDDD D  C      FACIDP+APCVDDDDIT  MVEN
Sbjct:  214 GYDGGDCCECTCEYESPYDWDDDWDYHCME----FACIDPSAPCVDDDDITVDMVEN 266

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7FI92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI92_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 3.650e-13
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 1

Query:    1 GYDGGDCCECTCEVGNP-WDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTC+V N  W         + +Y FACID  APCVDDDDITA MVEN
Sbjct:    8 GYDGGDCCECTCQVTNSGWG-------CNPDY-FACIDLEAPCVDDDDITAEMVEN 55

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 7.040e-13
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 1

Query:    1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTC   N WDDD   +C+  +   ACIDP+APCVDDDD+T  MVEN
Sbjct:   76 GYDGGDCCECTCV--NAWDDD--YSCAANS---ACIDPSAPCVDDDDVTVDMVEN 123

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.050e-12
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = 1

Query:    1 GYDGGDCCECTCEVGNP--WDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTCE  +P  WDDD D  C      F+CIDP A CV DDDIT  M EN
Sbjct:  114 GYDGGDCCECTCEYESPYDWDDDWDYHCRE----FSCIDPNAACVSDDDITVDMFEN 166

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: A0A6H5K2J7_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.690e-12
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1

Query:    1 GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTC+  +  DDD  S   +++Y  ACIDP A CVDDDD+TA MVEN
Sbjct:   51 GYDGGDCCECTCQTQS--DDDYYSWGCNKDY-MACIDPDASCVDDDDVTAEMVEN 102

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 3.800e-12
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1

Query:    1 GYDGGDCCECTCEV--GNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITAVMVEN 165
            GYDGGDCCECTCEV   + WD+D    C     GFACIDP+APCV+DDDIT  + E+
Sbjct:  124 GYDGGDCCECTCEVPTDDDWDNDLYVACGE---GFACIDPSAPCVNDDDITVDVDES 177

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1002.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
D7FI89_ECTSI	1.420e-24	80.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JM92_9PHAE	2.530e-19	71.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FI87_ECTSI	8.770e-19	70.91	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JXR2_9PHAE	6.930e-17	69.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G3F4_ECTSI	8.260e-16	70.18	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FI92_ECTSI	3.650e-13	64.29	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G0S4_ECTSI	7.040e-13	65.45	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KB04_9PHAE	2.050e-12	63.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2J7_9PHAE	2.690e-12	63.64	LNR domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D7G4F9_ECTSI	3.800e-12	61.40	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Pages

Properties


Property Name	Value
Start	0
Stop	0
Cds size	165
Model size	165
Exons	2
Hectar predicted targeting category	no signal peptide or anchor

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig1002:18785..20351+
coding sequence from alignment at E-siliculosus-1a_F_contig1002:18785..20351+

protein sequence of mRNA_E-siliculosus-1a_F_contig1002.79.1

>prot_E-siliculosus-1a_F_contig1002.79.1 ID=prot_E-siliculosus-1a_F_contig1002.79.1|Name=mRNA_E-siliculosus-1a_F_contig1002.79.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=55bp
GYDGGDCCECTCEVGNPWDDDDDSTCSHQNYGFACIDPAAPCVDDDDITA
VMVEN

mRNA from alignment at E-siliculosus-1a_F_contig1002:18785..20351+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig1002.79.1 ID=mRNA_E-siliculosus-1a_F_contig1002.79.1|Name=mRNA_E-siliculosus-1a_F_contig1002.79.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1567bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1002:18785..20351+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCTACGACGGGGGCGACTGCTGCGAGTGCACGTGTGAGGTAGGCAAGTC
GAAAAGCAAGTGGAAGTTCTAAAGAGTTCATCCTTTGGGCCCTGTCGCCA
TGGAATCTATCTCCAGTTATCTGCTCTGAATAACTGCGTCGCAATTCTGA
AAACTCTATTGTACGCGAGGGACTTTTGCAATTCTGCCGTCTCACATGTG
TGGTGAAGTACATAATTGGCACGGTTTCTCACGGTTTCTCACGTTCAGTA
GCAGCAGTAGGTCTGCAGAAACAGAGACAACAGTCTAGTATCCAATGAAC
GACACGAAGATTTGAACCATTATTGCGTTTGCACGTGCTCTGTACTCTCT
GCCGTCAGGTACCGGTCAGACCCCCTTTACTGACCGGCAACATACCGTAA
ACCAGCAATCCGCTTTACCGACCAGTAAATTACCGCAAGAAGCGGGGATG
ACAAACAACTGTCCCCGGGGTTTCCAGTCGTTTCGTTCATTTGTGCTGTG
TGCCGACCGGAGCTCTGGTACACCACCCCAAACAGCAGTAGTGTTGCGTT
GATGCTGTGACCCATCAACAAATTGATGGCGTGCGGCACCTTAAAAGTGT
ACCGAACCCGAAACCAGCAGTGAATGAATGTGTTGTTGAACAAGGTTCTT
GCAAAGATGTGTGTAGGCATGTTAGTTGGTTTCGGCGGGTGAGCAGGATG
CAGGAAGGTTGCCCATTCGAGTGGCTCACCCCTCGTCTACAGCTCCACAT
CATTTATCAACAACAAAGAGAAGAAAACAATCACAAAAGCCAGATGAAGG
CCCCTTGTTGAAATGTTTATCACGTACGTTCCCGTACATGCGTGGTCTCC
GCATCTGTTCCCCGAAGAACCGACGGCAAACTCAAAACAGGAGTGCTCGA
AAGCGAGCCCCAAGAATCCGTTGGTTTTGCGGTGCCTGAATGTCTGTGGC
CTGCTGCAGATAAGCTAAGCTCTGACCTCGAGAGAGACTCAATGTGGAGT
GTGGAAAGCTGCAGCAGCTGCTTCCCCCGCAAGGCAGGGACTGAGGGGGG
GGCGCAAATGGGGGTGGGGGTGTGCCGAGAATGTCGAGAATTACCTCTAT
TTTTGACTTGACCGACCCTGCCAACCCTTTACAGGTAAAGGTACTGGTCA
AGGGTAACTGACATCCTTGGTTTCCTACTGACCTCGCTACCGCTCTGTGT
GCCATACTCCATCCTCGCGCGGACGCGTGGTCCATGGCCTAACATCTAGG
GCATGCGAAAGATGAGTACCCCCCCCCCCCTACTGTCCTCTCTAGTACTC
GGAAACGCAAGTTCCTCCTGCTACAGCCAAGGCGAGTCCTGCCTGGCTTG
TCACGTGCTTCCTTGATCCCTGACCTCCCGTCCATCCCGCCTTCCTCATT
CCTGAACACGTACTGGTCTTGGTCTGACCTGCTCACGCATGTGCCAGAGC
CCATGGGACGACGACGACGACTCGACTTGCTCCCACCAAAATTACGGGTT
TGCCTGCATCGACCCCGCAGCACCGTGTGTTGACGATGACGATATCACCG
CCGTGATGGTGGAGAAC

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1002:18785..20351+

>mRNA_E-siliculosus-1a_F_contig1002.79.1 ID=mRNA_E-siliculosus-1a_F_contig1002.79.1|Name=mRNA_E-siliculosus-1a_F_contig1002.79.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1002:18785..20351+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCTACGACGGGGGCGACTGCTGCGAGTGCACGTGTGAGGTAGGCAAGGC
TACGACGGGGGCGACTGCTGCGAGTGCACGTGTGAGGTAGGCAACCCATG
GGACGACGACGACGACTCGACTTGCTCCCACCAAAATTACGGGTTTGCCT
GCATCGACCCCGCAGCACCGTGTGTTGACGATGACGATATCACCGCCGTG
ATGGTGGAGAACCCCATGGGACGACGACGACGACTCGACTTGCTCCCACC
AAAATTACGGGTTTGCCTGCATCGACCCCGCAGCACCGTGTGTTGACGAT
GACGATATCACCGCCGTGATGGTGGAGAAC