Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match:
A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)
HSP 1 Score: 207 bits (528), Expect = 2.860e-62
Identity = 99/129 (76.74%), Postives = 108/129 (83.72%), Query Frame = 2
Query: 620 DDSLQFAAMRDPRAVAVSTHFHVNSHTEENIGHPSLVKSLDEAVLLILPQICQFTTIRHILFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLPARWIEDIHATLPEWQQDAHRDPHPSGQDKAS 1006
DDSLQFA +RDPRAVAVST+F+V SH H S KSLDEAVLLILPQ+CQFTTIRH+LFDGQLSD+S+IFWYEDAMRDPLGWHYRWASFAGF LPA WI+DI ATLPE QQ RDPHP GQ +S
Sbjct: 27 DDSLQFAVLRDPRAVAVSTYFYVKSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKVKRDPHPGGQQVSS 155
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match:
A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)
HSP 1 Score: 207 bits (526), Expect = 1.590e-61
Identity = 105/218 (48.17%), Postives = 136/218 (62.39%), Query Frame = 2
Query: 431 ISRVEVAASTRFKHSFPVPDSCRWKHDAGIAKVGEGCGSVNGRPVENASDLWLCMEEASCEYSDDSLQFAAMRDPRAVAVSTHFHVNSHTEENIGHPSLVKSLDEAVLLILPQICQFTTIRHILFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLPARWIEDIHATLPEWQQDAHRDPHPSG---------QDKAST-VRPTGGVVSCVNPWL 1054
+ RVE++ ST KH PV +SC W H +G G+GC S +G PVE +DLW CM++ CE +D+ LQF +RDPRAVAVST+FH H + N + L SLD+ VL ILP +C FTT+RHILF G LS+R+++FWYE + DP WHYRWASFAG LP WI+ + A E Q H +PHP G QD+ S +RP + S + WL
Sbjct: 2 LRRVEISISTVDKHRLPVNESCPWSHGSGTVHEGDGCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFH-RVHKDNN--YQKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGMVA---ENQAHKHLNPHPGGAETSDNRTWQDEVSPGIRPE--MDSILRKWL 211
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match:
D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)
HSP 1 Score: 193 bits (491), Expect = 7.200e-54
Identity = 105/283 (37.10%), Postives = 152/283 (53.71%), Query Frame = 2
Query: 131 LGIGQCLPCQGLFGRLKEAPDGELQQSSQIELRGEPKSGTRFSWGWAHGLLEHTCEHLKHIYGDKTCRI-----------ERTRDETHLTNMT---LVFEP----GLAGSDGL----CSCEGISRVEVAASTRFKHSFPVPDSCRWKHDAGIAKVGEGCGSVNGRPVENASDLWLCMEEASCEYSDDSLQFAAMRDPRAVAVSTHFHVNSHTEENIGHPSLVKSLDEAVLLILPQICQFTTIRHILFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLP 913
L +C PC+ +FG+L A QQ +++LRGEPKSGT F + WA L TCE L +YG+ TC + ET L +M VF+P G + + G C C + +V + S+ FKH PVP SC W+H + +GC +VNGR V N +D C+++ C DD +Q +RDPRAVAVS+ FH+ +H H + +S+D VL +LP IC F +R+++ +L ++ F Y++++ DPL WH RW S G T P
Sbjct: 78 LQADECPPCETMFGKLNGA-----QQHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLT-DESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPP 354
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match:
D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI)
HSP 1 Score: 177 bits (450), Expect = 4.980e-51
Identity = 97/172 (56.40%), Postives = 115/172 (66.86%), Query Frame = 2
Query: 644 MRDPRAVAVSTHFHVNSHTEENIGHPSLVKSLDEAVLLILPQICQFTTIRHILFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLPARWIEDIHATLPEW-QQDAHRDPHPSGQDKASTVRPTGGVVSCVNPWLSR--PRERLHPKSSPSIQPPTVFVRKYRAAMTRT 1150
MRDPRAVAVST+F++ + ++ HPS KSLDEAV++ILPQICQFTTIRHILFDGQLSDRS+IFWYEDAMRDPLGW+ RWAS AGFTLPARWI+DI A+L E + D R+PHP GQ VVS W P RL S P V + ++ + T
Sbjct: 1 MRDPRAVAVSTYFYIK-RSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAENDRKREPHPGGQ-----------VVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARFDVPASET 160
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match:
D7FUF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF6_ECTSI)
HSP 1 Score: 73.6 bits (179), Expect = 1.470e-12
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 2
Query: 800 LFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLPARWIEDIHATLPEWQQDAHRDPHPSG 991
+F+G LSDRS++FWYE+ + DP WHYRWASFAG LP WI+ + A Q+ + HP G
Sbjct: 1 MFEGLLSDRSEMFWYEETLEDPFAWHYRWASFAGLILPRAWIDGMVAVN---QERLFFNRHPGG 61
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 5
0 1 Expect = 2.86e-62 / Id = 76.74 Expect = 1.59e-61 / Id = 48.17 Expect = 7.20e-54 / Id = 37.10 Expect = 4.98e-51 / Id = 56.40 Expect = 1.47e-12 / Id = 50.00 Sequence A0A6H5JG38_9PHAE A0A6H5KDV7_9PHAE D8LJE4_ECTSI D7G2T4_ECTSI D7FUF6_ECTSI back to top
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927507.3360665-UTR-E-siliculosus-1a_F_contig1002:2433..2452 1622927507.3360665-UTR-E-siliculosus-1a_F_contig1002:2433..2452 Ectocarpus siliculosus Ec863f_EcPH12_90f female UTR E-siliculosus-1a_F_contig1002 2434..2452 + 1696318557.7961605-UTR-E-siliculosus-1a_F_contig1002:2433..2452 1696318557.7961605-UTR-E-siliculosus-1a_F_contig1002:2433..2452 Ectocarpus siliculosus Ec863f_EcPH12_90f female UTR E-siliculosus-1a_F_contig1002 2434..2452 +
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1002.78.1
>prot_E-siliculosus-1a_F_contig1002.78.1 ID=prot_E-siliculosus-1a_F_contig1002.78.1|Name=mRNA_E-siliculosus-1a_F_contig1002.78.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=393bp
MLGRACVCLPLALLGAYAASGVELVSEYITRTRPPETLGIGQCLPCQGLF back to top mRNA from alignment at E-siliculosus-1a_F_contig1002:2434..6708+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1002.78.1 ID=mRNA_E-siliculosus-1a_F_contig1002.78.1|Name=mRNA_E-siliculosus-1a_F_contig1002.78.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4275bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1002:2434..6708+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)AGACTGGTCAGGTGTCATC ATGCTGGGTCGAGCTTGTGTTTGCCTGCCAT
TGGCTCTGCTAGGGGCATACGCTGCCAGCGGGGTGGAATTGGTTTCGGAG
TACATCACTCGCACCAGACCGCCTGAGACACTGGGGATAGGTCAATGTCT
ACCGTGTCAAGGACTGTTTGGGAGACTGAAAGAGGCACCCGATGGAGAGC
TCCAGCAATCATCCCAAATCGAACTCCGGGG GTGGGTACATTGCGGTACT
GTTGTGTGCTTCTTGTACCCATCTCTGGCTCTCCCTACACCCGGTCCGAT
CGACAATACATTGTTGATACCAAGACTAAAGGTTAGGGGTGACACGTTAC
TGGCCGTGCACACATGCTACTGTGTGTAGAGTGAGAAAGTCCGTCGTGAC
TCTTACTTTTCGAAATGTCGCCTTGGTGTTGACGACGGTGACCTGTTGGG
CTGTTGAACTCCTCGCACTCCGGGCACACTGCCTCAGTGTTGACGCAACG
ATACACTATTATAATTCACATGGAAGACCTCGTAAGTATATATGTTGATG
CGCGGTATGAATACATACCTGCTCAGCATTCCTCAGCTCGGGCTTTTTCT
CTCCCCGTCTGGCTCTTACTCTACCCTTTCGATCGATCTTCCTCGTCCGT
TTCGTTTCCCACACCGTGAAGCGAGCCCAAGAGCGGTACCAGATTCTCGT
GGGGCTGGGCACATGGCCTTCTAGAGCATACGTGCGAGCATTTGAAACAC
ATCTACGGGGATAAGACATGTCGCATCGAACGCACCCGCGACGAGACTCA
TCTTACCAACATGACATTAGTGTTTGAGCCAGGCTTGGCTGGAAGCGATG
GGCTTTGCTCATGCGAAGGGATTAGCAG GTGAGCACGTCTGGGGAGCAGG
TCGGCATTGGCCGCGTACGTAGGCTTGCCATTAATGAATTCGTGTTTCGT
CCGGACGAGGCATACTCACTTGCTATTTTCTGCCTCACAGTGCGGTAAGA
ACCCAGGAGGAAAACAGGATAGGAGAAAAAAAGGTACATCGTTACGGAGA
AAGGTCCACAGGGTTGTTTCTTGGGCAGCAAGTGATCTCAAAAACTCGAT
CGCAGGCGATGGAAAGGTAAAAATCCCTGTTGGATATCTAGAGGAGCTAT
CCATTGGGCATATGCTGGCGCTGGGAGAGAGATACTCCAGGTGTGCAGTG
GGTGGATATGTGGATGCTCTCATGTGAGCTTCTTGTGACTGTTGGTTCAG
CTGCCGTTGTCCTTTCGTCATCAACGTGAGGTATTGAACTCACTAGCGCC
TTTGCCCGAGGGGTATTCAAACGCACCATCACGACACAATTTCCGATGAT
CAAGCAGCAAACACACCCGCAATACGCAAGACAAGACCTTTACCGGTTGT
GCCAAATACTGCAGAGAAAAATCGTGGAAATGGGTTCGGGGGTAGATGTT
ACAATACGTGCGTCAGCTGAGGCGGCGTGAAGCAACAAAGTTGGCAACAA
GAATGAACAAACACCATTGACGTCGTTCCAGCGATGGGTTGACACGTACA
CCACAAAAATCACACTACTGCTGTTGTGATGACAGCCAAAAGCAATCGCC
AAGCATGGCCTACCGGTGTTGCACGGCACACGAGCAGGGGCGACCGCTCA
TCCCAGTTCGCCATGGGGATGAAGTATGTACTTAAGTAACGGAAAAATAT
TTCGTTGAAAATTGTTGTACGTGATGGGCGTACATACTTCGTGCGGGCTT
TTTATGAGCGGTGGACGCGGACGAAAGGAAGGGTACATTCTCCGCCCCAA
TGAAAAACGAGAATTCCCTCATGGTTGCTATTGTGGAAGATCGGGATATT
TAGCGTTTTTGTACCTAACCAACCGTCTTCATAGATAGTGAGGTATACCA
CCAGAGCAGCACGGTATCCGCTACTCCCCCTACGTTTCGTTGTGATGGAT
ACATAGGGTGTGCTATAGCAGGAGTAGGTTGTGCTTTTCTCGCCTCTGCC
GAGAATTCATTGCCGTGCGCGGAAAGGAAAAGTGCGTTGATGCTGTCGCG
TGCTGAGCTCAATCTCCCACACTTCTGGCAGTTTTGCTAAACTTCTGAGT
ACCCGTCGGTGGTCCCATCGGCGGAGCACGAACTTCCCACGAAGTGCCTA
CCGTGGGCACTTCAACCTAGTACTTCGCCACCGGCATGTCAACCTAGAAC
TTTACCATCGGCGCATCAACCTAGAACTTGGCCACCCAGCGACAACCAAG
CACGTATCGTGTGGGCTTGGCGTTGGGGTTAGGGTTAGCGTTAAGGTTAT
TAGCCGTTATAATGCCCATTCGATAATCGATGGTTGAGGAGTACACTGGT
CCCGGTCGAAGTGCACTCATTGGCCGCCCATGGGCACCATGGCGGTCTAT
GTAGCAGAACTGTAGAATGTGTGGGAGACCCGCTGTCCTGTGCCAAGCGT
CCTGCTGCTGTATATGCGCGCGTGGTACGAAAGCTACGCTGTAATTCAAA
TTGGTTTGCGGTAGGTCTGTAAGTACGGCCGACGTGTGCTGCGCATCTAT
GCCCTATGCGATCAAACAGTTGCAACGTGTGTCGGCCTTTATCAGGGGGG
TTGCGCGTCATTCAACGTATGTATGTGTTCATTGCAAAAACAAATATCTG
TGGCGTACCCCTGCTGTGTGTAATAAAGCAAGGGCGGTGTGGATACGTGG
TGGTGAAATACGAAGTTGAGCCTCGACCCCAACTTGACGTTTTTTATCTG
CGGGTTGCAACTCTCTTGATTCTGCAGGGTAGAGGTAGCTGCCTCGACTC
GTTTCAAGCACTCGTTTCCTGTTCCGGATTCCTGCCGCTGGAAACACGAT
GCGGGGATCGCCAAAGTAGGGGAGGGATGCGGAAGTGTCAATGGACGACC
TGTGGAAAATGCCTCAGATTTGTGGCTCTGTATGGAAGAAGCATCGTGCG
AGTATTCAG GTACATCTTGCTGCATCTGTACACGGGTCGATCAAACCCAA
CCCCGAGCTGCTCGAGTAATTGCCCCCATATTCCGCTTTCATCGCCCAGC
GTAAGGGATTGGATAATGCCTTTTTCGTTGGTCTTCGCGACTCTGATTTG
CACGGCCCGGAAACCTAACCCCTCACATGGTTTCGCCCGATCATCCCGAC
CATTGTGCGCTATTGCTTTCTAGATGATTCCCTCCAGTTCGCGGCGATGA
GGGACCCTCGTGCAGTGGCCGTCAGCACCCACTTTCACGTCAACAGCCAC
ACAGAAGAAAACATCGGTCACCCGTCCTTGGTCAAGTCTTTGGACGAGGC
CGTCTTGTTGATACTTCCGCAAATCTGCCAGTTCACCACGATTCGACACA
TCTTGTTCGATGGGCAATTGTCTGACAGAAGCAAAATATTCTGGTACGAA
GATGCTATGAGAGACCCGTTAGGCTGGCACTACCGATGGGCATCGTTCGC
GGGTTTCACGCTGCCCGCACGCTGGATCGAAGACATCCACGCGACCCTGC
CAGAATGGCAGCAGGATGCCCATCGCGATCCTCACCCGAGTGGACAAGAT
AA GTCCCCAAACAGAACCTGGGAGGACGAGGTTTCTCCGGAGATACGCGA
AGAGATGGACTCCATTCTTCGAACGTGGCTGCCTGGCGTACTTCTAGCGC
GATTTGATATACCGGCTTGAGAAATTCCGTTCTTTGAAGGTGTTTTCTAA
TATACTGTTGCTATTTGACCAATGTCTTGGGTGGGGAAGAGACTGCTATG
CACCTAGCTCTTGTCCGGGTAGGACACCAACCTTTTGAAGCAGGGAGAGG
CAAAGAGAGGCAGGATCCGGAAAGGGTGCAGAGATGCAACTCGCAACGAA
TTTCATGACTGGCCCTGCAGATTGTAGCTCTTGACCAGAACCGAGGCCGT
TGTCTGCGGCAAGTGTTGCTTGGCGTTGTATGTGGGTGGGCTGATGACGT
TCAGCAAGAAGACTGCCTTGTCCGTTGAAAATGTATGTAGGGTGCGTCAA
GTTTGCGGAAAGCTGAGGATGAGACGGTTGGTTCCAACGCCGCCATTATT
CGACATCGCCGCTTTTTCTGCTTTAGAGCATCTACAGTCCGTCCCACAGG
GGGTGTGGTATCTTGTGTAAACCCCTGGCTTTCACGTCCCCGGGAGCGCC
TTCATCCGAAGTCGTCGCCGTCGATACAACCTCCAACGGTGTTTGTGCGG
AAATATAGGGCAGCAATGACCAGAACTCTCGCTGGAGAGGCAAACAAGAT
TTCCGCGTGCGACAGGGACTACTTT back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1002:2434..6708+
>mRNA_E-siliculosus-1a_F_contig1002.78.1 ID=mRNA_E-siliculosus-1a_F_contig1002.78.1|Name=mRNA_E-siliculosus-1a_F_contig1002.78.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2358bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1002:2434..6708+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top