mRNA_E-siliculosus-1a_F_contig1002.78.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE) HSP 1 Score: 207 bits (528), Expect = 2.860e-62 Identity = 99/129 (76.74%), Postives = 108/129 (83.72%), Query Frame = 2
Query: 620 DDSLQFAAMRDPRAVAVSTHFHVNSHTEENIGHPSLVKSLDEAVLLILPQICQFTTIRHILFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLPARWIEDIHATLPEWQQDAHRDPHPSGQDKAS 1006
DDSLQFA +RDPRAVAVST+F+V SH H S KSLDEAVLLILPQ+CQFTTIRH+LFDGQLSD+S+IFWYEDAMRDPLGWHYRWASFAGF LPA WI+DI ATLPE QQ RDPHP GQ +S
Sbjct: 27 DDSLQFAVLRDPRAVAVSTYFYVKSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKVKRDPHPGGQQVSS 155
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE) HSP 1 Score: 207 bits (526), Expect = 1.590e-61 Identity = 105/218 (48.17%), Postives = 136/218 (62.39%), Query Frame = 2
Query: 431 ISRVEVAASTRFKHSFPVPDSCRWKHDAGIAKVGEGCGSVNGRPVENASDLWLCMEEASCEYSDDSLQFAAMRDPRAVAVSTHFHVNSHTEENIGHPSLVKSLDEAVLLILPQICQFTTIRHILFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLPARWIEDIHATLPEWQQDAHRDPHPSG---------QDKAST-VRPTGGVVSCVNPWL 1054
+ RVE++ ST KH PV +SC W H +G G+GC S +G PVE +DLW CM++ CE +D+ LQF +RDPRAVAVST+FH H + N + L SLD+ VL ILP +C FTT+RHILF G LS+R+++FWYE + DP WHYRWASFAG LP WI+ + A E Q H +PHP G QD+ S +RP + S + WL
Sbjct: 2 LRRVEISISTVDKHRLPVNESCPWSHGSGTVHEGDGCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFH-RVHKDNN--YQKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGMVA---ENQAHKHLNPHPGGAETSDNRTWQDEVSPGIRPE--MDSILRKWL 211
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI) HSP 1 Score: 193 bits (491), Expect = 7.200e-54 Identity = 105/283 (37.10%), Postives = 152/283 (53.71%), Query Frame = 2
Query: 131 LGIGQCLPCQGLFGRLKEAPDGELQQSSQIELRGEPKSGTRFSWGWAHGLLEHTCEHLKHIYGDKTCRI-----------ERTRDETHLTNMT---LVFEP----GLAGSDGL----CSCEGISRVEVAASTRFKHSFPVPDSCRWKHDAGIAKVGEGCGSVNGRPVENASDLWLCMEEASCEYSDDSLQFAAMRDPRAVAVSTHFHVNSHTEENIGHPSLVKSLDEAVLLILPQICQFTTIRHILFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLP 913
L +C PC+ +FG+L A QQ +++LRGEPKSGT F + WA L TCE L +YG+ TC + ET L +M VF+P G + + G C C + +V + S+ FKH PVP SC W+H + +GC +VNGR V N +D C+++ C DD +Q +RDPRAVAVS+ FH+ +H H + +S+D VL +LP IC F +R+++ +L ++ F Y++++ DPL WH RW S G T P
Sbjct: 78 LQADECPPCETMFGKLNGA-----QQHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLT-DESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPP 354
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI) HSP 1 Score: 177 bits (450), Expect = 4.980e-51 Identity = 97/172 (56.40%), Postives = 115/172 (66.86%), Query Frame = 2
Query: 644 MRDPRAVAVSTHFHVNSHTEENIGHPSLVKSLDEAVLLILPQICQFTTIRHILFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLPARWIEDIHATLPEW-QQDAHRDPHPSGQDKASTVRPTGGVVSCVNPWLSR--PRERLHPKSSPSIQPPTVFVRKYRAAMTRT 1150
MRDPRAVAVST+F++ + ++ HPS KSLDEAV++ILPQICQFTTIRHILFDGQLSDRS+IFWYEDAMRDPLGW+ RWAS AGFTLPARWI+DI A+L E + D R+PHP GQ VVS W P RL S P V + ++ + T
Sbjct: 1 MRDPRAVAVSTYFYIK-RSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAENDRKREPHPGGQ-----------VVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARFDVPASET 160
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Match: D7FUF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF6_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 1.470e-12 Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 2
Query: 800 LFDGQLSDRSKIFWYEDAMRDPLGWHYRWASFAGFTLPARWIEDIHATLPEWQQDAHRDPHPSG 991
+F+G LSDRS++FWYE+ + DP WHYRWASFAG LP WI+ + A Q+ + HP G
Sbjct: 1 MFEGLLSDRSEMFWYEETLEDPFAWHYRWASFAGLILPRAWIDGMVAVN---QERLFFNRHPGG 61 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1002.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1002.78.1 >prot_E-siliculosus-1a_F_contig1002.78.1 ID=prot_E-siliculosus-1a_F_contig1002.78.1|Name=mRNA_E-siliculosus-1a_F_contig1002.78.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=393bp MLGRACVCLPLALLGAYAASGVELVSEYITRTRPPETLGIGQCLPCQGLFback to top mRNA from alignment at E-siliculosus-1a_F_contig1002:2434..6708+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1002.78.1 ID=mRNA_E-siliculosus-1a_F_contig1002.78.1|Name=mRNA_E-siliculosus-1a_F_contig1002.78.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4275bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1002:2434..6708+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1002:2434..6708+ >mRNA_E-siliculosus-1a_F_contig1002.78.1 ID=mRNA_E-siliculosus-1a_F_contig1002.78.1|Name=mRNA_E-siliculosus-1a_F_contig1002.78.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2358bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1002:2434..6708+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |