mRNA_E-siliculosus-1a_F_contig10016.76.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: D8LGH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGH3_ECTSI)

HSP 1 Score: 484 bits (1245), Expect = 1.920e-168
Identity = 249/270 (92.22%), Postives = 253/270 (93.70%), Query Frame = 3

Query:    3 RCVAMAQKNIQDNDIPFDQALVTALRWGEEESTTKFCKDFSEWDSRRVIGTGSGGKNGVASAAGPAKSLAAGAQDKASVPGDVAVCTHGHSPTASSGNGHLNEDPASTSCEGQDRKVGPPXXXXDSLPSSPSPLKSFDFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFAFEILNGDNKEEGSKGHNSDGEGGGKDVGRADARKEGAAGGHYSSDAPDVGGIELCVDDARRARLYELHSVDLAFAT 812
            +CVAMAQKNIQDND+PFDQALVTALRWGEEESTTKFCKDFSEWDSRRVIGTGSGGKNGVASAAGP KSLAAGAQDKASVPGDVAVC HGHSP ASSGNGHLNEDPASTSCEGQDR VGPP    DSLPSSPSPLKSFDFILAGDVLYKHSLLEPFL TVRDMLA GGRMLLCH+PRAGVTYDIVERAFAQAGFAFEILNGDNKEEGSKGH+S GEGGGKDVGRADA  EGAAGGH   DAPDVGGIELCVDDARRARLYELHSVDL FAT
Sbjct:   85 KCVAMAQKNIQDNDVPFDQALVTALRWGEEESTTKFCKDFSEWDSRRVIGTGSGGKNGVASAAGPTKSLAAGAQDKASVPGDVAVCAHGHSPNASSGNGHLNEDPASTSCEGQDRNVGPPPPPRDSLPSSPSPLKSFDFILAGDVLYKHSLLEPFLRTVRDMLAAGGRMLLCHIPRAGVTYDIVERAFAQAGFAFEILNGDNKEEGSKGHSSGGEGGGKDVGRADAPTEGAAGGHC--DAPDVGGIELCVDDARRARLYELHSVDLTFAT 352

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BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A8J2SGM5_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGM5_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.820e-10
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 3

Query:  414 DFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERA 563
            D +LAGDVLYK +L+EPFL  +   LA GGR LLCH+PRAGV++++VE A
Sbjct:  141 DLVLAGDVLYKRALVEPFLDALEAALAPGGRALLCHLPRAGVSHEVVEAA 190

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BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A067BSN2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BSN2_SAPPC)

HSP 1 Score: 67.0 bits (162), Expect = 5.560e-9
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 3

Query:  411 FDFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFAF 587
            FD ++AGDVLYK  L++  L TVR  LA  GR +LCH+PRA V++D+++ A    GF F
Sbjct:  161 FDVLIAGDVLYKGELVQLLLSTVRTWLAPHGRFVLCHIPRADVSHDVLQAALTAHGFRF 219

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BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A7S2XZT6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZT6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.010e-8
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 3

Query:  411 FDFILAGDVLYKHSLLEPFLGTVRDMLA--------GGGRMLLCHVPRAGVTYDIVERAFAQAGF 581
            FD ++AGDVLYKHSL +PF  T R +L+        G G +LLCH+PRAGV  + V+    Q GF
Sbjct:  128 FDVVIAGDVLYKHSLCQPFFETARQLLSSPTDENRDGDGFLLLCHIPRAGVEQEEVQAIAEQTGF 192

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BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A1V9YS28_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YS28_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.020e-8
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 3

Query:  411 FDFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFAFEI 593
            FD +LAGDVLYK  L+   L +V+  L   G  LLCH+PRA V++D+++ A A  GFAF I
Sbjct:  161 FDRVLAGDVLYKGELVPLLLASVKTWLKSDGTFLLCHIPRADVSHDVLQSALAAHGFAFGI 221

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BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A024TSL8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSL8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.490e-8
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 3

Query:  411 FDFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFAFEIL 596
            FD ++AGDVLYK  L+   L T+   L+  G   LCH+PRA V++++++R    AG +F+I+
Sbjct:  165 FDVVVAGDVLYKSELVTLLLATINTWLSASGAFYLCHIPRADVSHEMLQRELTAAGLSFDII 226

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BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A3R6VQW2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VQW2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.490e-7
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 3

Query:  411 FDFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFAFEIL 596
            FD ++AGDVLYK  L+   L T+   L+  G   LCH+PRA V++++++R    AG +F+I+
Sbjct:  165 FDVVVAGDVLYKSELVTLLLATINTWLSASGAFYLCHIPRADVSHEMLQRELTAAGLSFDII 226

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BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A421F9P3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F9P3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.880e-7
Identity = 31/73 (42.47%), Postives = 40/73 (54.79%), Query Frame = 3

Query:  381 LPSSPSPLKSFDFILAGDVLYKHSLLEPFLGTVRDMLAGGG---RMLLCHVPRAGVTYDIVERAFAQAGFAFE 590
            L   P      D +LAGDVLYK  LL     TV  +L  GG     +LCH+PRA VT+D+V++    +G  FE
Sbjct:  157 LAELPGAFTDVDIVLAGDVLYKSELLPLLFATVTRVLEAGGDGRAFVLCHIPRADVTHDLVQKQIVDSGLQFE 229

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BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A1V9ZFX3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFX3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.860e-7
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3

Query:  411 FDFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFAFEI 593
            FD I+AGDVLYK  L+   L +V++ L   G  +LCH+PRA V+++++++A  +   AF I
Sbjct:  160 FDVIVAGDVLYKGELIPLLLASVKEWLQPNGIFVLCHIPRADVSHEVLQKALTEQNMAFAI 220

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BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A7S2W8K5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8K5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 8.740e-7
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 3

Query:  411 FDFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFA 584
            FD +LAGDVLYK  L   F  +V++++A  G  LLCH+PRAGV+ ++V     +AG A
Sbjct:  177 FDVVLAGDVLYKQDLPALFFESVKELIAADGIALLCHIPRAGVSQELVVARAEEAGLA 234

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 19

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POSITION

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Match Name	E-value	Identity	Description
D8LGH3_ECTSI	1.920e-168	92.22	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A8J2SGM5_9STRA	7.820e-10	62.00	Hypothetical protein n=3 Tax=Pelagomonas calceolat...	[more]
A0A067BSN2_SAPPC	5.560e-9	50.85	Uncharacterized protein n=2 Tax=Saprolegnia TaxID=...	[more]
A0A7S2XZT6_9STRA	1.010e-8	49.23	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A1V9YS28_9STRA	1.020e-8	50.82	Uncharacterized protein n=1 Tax=Achlya hypogyna Ta...	[more]
A0A024TSL8_9STRA	7.490e-8	41.94	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
A0A3R6VQW2_9STRA	1.490e-7	41.94	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
A0A421F9P3_9STRA	5.880e-7	42.47	Uncharacterized protein n=2 Tax=Phytophthora kerno...	[more]
A0A1V9ZFX3_9STRA	6.860e-7	42.62	Uncharacterized protein n=1 Tax=Thraustotheca clav...	[more]
A0A7S2W8K5_9STRA	8.740e-7	48.28	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]

Pages

Properties


Property Name	Value
Start	1
Stop	1
Cds size	801
Model size	1189
Exons	2
Ec32 ortholog	Ec-16_004030.1
Ec32 ortholog description	S-adenosyl-L-methionine-dependent methyltransferase
Hectar predicted targeting category	other localisation
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	P
EggNOG OGs	COG3897@1,KOG2920@2759
EggNOG free text desc.	peptidase activity, acting on L-amino acid peptides
Seed eggNOG ortholog	112098.XP_008609916.1
Seed ortholog evalue	8.9e-09
Seed ortholog score	67.8
Taxonomic scope	Eukaryota

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig10016:730..2339+
coding sequence from alignment at E-siliculosus-1a_F_contig10016:730..2339+

protein sequence of mRNA_E-siliculosus-1a_F_contig10016.76.1

>prot_E-siliculosus-1a_F_contig10016.76.1 ID=prot_E-siliculosus-1a_F_contig10016.76.1|Name=mRNA_E-siliculosus-1a_F_contig10016.76.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=267bp
MAQKNIQDNDIPFDQALVTALRWGEEESTTKFCKDFSEWDSRRVIGTGSG
GKNGVASAAGPAKSLAAGAQDKASVPGDVAVCTHGHSPTASSGNGHLNED
PASTSCEGQDRKVGPPPPPPDSLPSSPSPLKSFDFILAGDVLYKHSLLEP
FLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFAFEILNGDNKE
EGSKGHNSDGEGGGKDVGRADARKEGAAGGHYSSDAPDVGGIELCVDDAR
RARLYELHSVDLAFAT*

mRNA from alignment at E-siliculosus-1a_F_contig10016:730..2339+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig10016.76.1 ID=mRNA_E-siliculosus-1a_F_contig10016.76.1|Name=mRNA_E-siliculosus-1a_F_contig10016.76.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1610bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10016:730..2339+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAGGTGCGTGGCAATGGCGCAGAAGAACATCCAAGACAACGACATCCCG
TTTGACCAAGCGCTCGTCACGGCCCTTCGGTAAGCGTGCAGCCCCCTCGA
GGCCGTGAGTAGGTCGCTCAGTCCTTCCTGCTTGTGCTTCGCATTGCTGC
GTCGTTTTTGTCTTGCGTTTCTGTTCGCGTTTAATTGTTTTGTGTCTGCC
ATTCTCTGCTTTTTTGCTCTCTGGGCTAGACTTTTAGCATCTAACTAGCT
GTTTTTGAGAATGGTGGGACGTTCTCTGGATCGTTGTGTTGTTTAGTTCA
GCCTTGCTGTGGATAGTCTTGGGCCACTGATTTTCGATCCCGTGCTTTGA
AGAGTATCGCAAGAAGAGGTACCATGCTGGATAGAGTTCAGATATGTTTT
TGATGTGAAGACAACAACAGCAGAAGCAGCAACAACAACGAAACCCCAGT
CCACAGATCCGCCGTCTGTGTGCCGCCGAACCATCTTCTTCGGCTGACAG
GTGGGGGGAAGAAGAATCGACCACGAAATTTTGCAAGGATTTTTCTGAGT
GGGATTCCCGGCGGGTCATCGGAACGGGAAGCGGCGGGAAGAACGGGGTA
GCTTCAGCAGCCGGGCCCGCCAAATCCTTAGCAGCGGGGGCACAAGACAA
GGCGTCGGTGCCAGGCGACGTGGCTGTTTGCACTCATGGTCACTCCCCCA
CCGCAAGTAGTGGAAACGGCCATCTCAACGAAGATCCCGCTAGCACATCT
TGTGAAGGACAAGATAGAAAAGTGGGGCCGCCGCCACCGCCGCCAGACAG
TCTACCATCATCGCCATCGCCGTTGAAGTCGTTCGATTTCATTCTGGCGG
GGGATGTGCTCTACAAGCACAGCCTCCTAGAGCCGTTCCTTGGAACGGTC
CGAGACATGCTGGCGGGGGGCGGTCGAATGCTCCTGTGCCACGTCCCGAG
AGCCGGCGTGACGTACGACATCGTCGAGCGGGCGTTTGCCCAAGCAGGGT
TCGCGTTTGAGATCCTGAACGGCGACAACAAGGAGGAGGGAAGTAAGGGG
CACAACAGCGACGGCGAGGGTGGGGGAAAGGATGTCGGCCGGGCGGATGC
ACGGAAAGAAGGGGCAGCAGGGGGTCACTACAGCAGTGATGCTCCAGATG
TCGGGGGGATCGAGCTGTGTGTAGACGACGCGCGGCGAGCCCGGTTGTAC
GAGTTGCATTCTGTCGACCTGGCGTTTGCAACGTAATCCCACCGCCTTGT
GTTCTTATCAAGCTTTCCCACTACAGTTGTGGTAGTCTCTCTCGTGATCG
TGTGATGTTCCAACTTCTCTGAACTGGGGTTGACAGGTGATACTATCGTG
TGTAGTGTGCGCTCGGGTCTTCTCTCGTTTCATTCGGCGTGTGTTTTTGT
TGGTGTCGAAGTTCGTCCCTCCTTACGGTGCTTGTGGTACATAAGGCTGT
GGCCAGGCGGCCACGCGCGCTTGTCTGCTGCACGGTACGGGAAGGAGCAC
TTCTAGCAATGACTTGAGGCCCACGAATACGATGCATGCACGTGTGAGCG
TCCCGCGTTGTCGCTCGCCGGACGAAAGCACTCGCATAGTCTCCTCTTTC
TCTGACTTCC

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10016:730..2339+

>mRNA_E-siliculosus-1a_F_contig10016.76.1 ID=mRNA_E-siliculosus-1a_F_contig10016.76.1|Name=mRNA_E-siliculosus-1a_F_contig10016.76.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1602bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10016:730..2339+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGCAGAAGAACATCCAAGACAACGACATCCCGTTTGACCAAGCGCT
CGTCACGGCCCTTCGATGGCGCAGAAGAACATCCAAGACAACGACATCCC
GTTTGACCAAGCGCTCGTCACGGCCCTTCGGTGGGGGGAAGAAGAATCGA
CCACGAAATTTTGCAAGGATTTTTCTGAGTGGGATTCCCGGCGGGTCATC
GGAACGGGAAGCGGCGGGAAGAACGGGGTAGCTTCAGCAGCCGGGCCCGC
CAAATCCTTAGCAGCGGGGGCACAAGACAAGGCGTCGGTGCCAGGCGACG
TGGCTGTTTGCACTCATGGTCACTCCCCCACCGCAAGTAGTGGAAACGGC
CATCTCAACGAAGATCCCGCTAGCACATCTTGTGAAGGACAAGATAGAAA
AGTGGGGCCGCCGCCACCGCCGCCAGACAGTCTACCATCATCGCCATCGC
CGTTGAAGTCGTTCGATTTCATTCTGGCGGGGGATGTGCTCTACAAGCAC
AGCCTCCTAGAGCCGTTCCTTGGAACGGTCCGAGACATGCTGGCGGGGGG
CGGTCGAATGCTCCTGTGCCACGTCCCGAGAGCCGGCGTGACGTACGACA
TCGTCGAGCGGGCGTTTGCCCAAGCAGGGTTCGCGTTTGAGATCCTGAAC
GGCGACAACAAGGAGGAGGGAAGTAAGGGGCACAACAGCGACGGCGAGGG
TGGGGGAAAGGATGTCGGCCGGGCGGATGCACGGAAAGAAGGGGCAGCAG
GGGGTCACTACAGCAGTGATGCTCCAGATGTCGGGGGGATCGAGCTGTGT
GTAGACGACGCGCGGCGAGCCCGGTTGTACGAGTTGCATTCTGTCGACCT
GGCGTTTGCAACGTAAGTGGGGGGAAGAAGAATCGACCACGAAATTTTGC
AAGGATTTTTCTGAGTGGGATTCCCGGCGGGTCATCGGAACGGGAAGCGG
CGGGAAGAACGGGGTAGCTTCAGCAGCCGGGCCCGCCAAATCCTTAGCAG
CGGGGGCACAAGACAAGGCGTCGGTGCCAGGCGACGTGGCTGTTTGCACT
CATGGTCACTCCCCCACCGCAAGTAGTGGAAACGGCCATCTCAACGAAGA
TCCCGCTAGCACATCTTGTGAAGGACAAGATAGAAAAGTGGGGCCGCCGC
CACCGCCGCCAGACAGTCTACCATCATCGCCATCGCCGTTGAAGTCGTTC
GATTTCATTCTGGCGGGGGATGTGCTCTACAAGCACAGCCTCCTAGAGCC
GTTCCTTGGAACGGTCCGAGACATGCTGGCGGGGGGCGGTCGAATGCTCC
TGTGCCACGTCCCGAGAGCCGGCGTGACGTACGACATCGTCGAGCGGGCG
TTTGCCCAAGCAGGGTTCGCGTTTGAGATCCTGAACGGCGACAACAAGGA
GGAGGGAAGTAAGGGGCACAACAGCGACGGCGAGGGTGGGGGAAAGGATG
TCGGCCGGGCGGATGCACGGAAAGAAGGGGCAGCAGGGGGTCACTACAGC
AGTGATGCTCCAGATGTCGGGGGGATCGAGCTGTGTGTAGACGACGCGCG
GCGAGCCCGGTTGTACGAGTTGCATTCTGTCGACCTGGCGTTTGCAACGT
AA