mRNA_E-siliculosus-1a_F_contig10016.76.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: D8LGH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGH3_ECTSI) HSP 1 Score: 484 bits (1245), Expect = 1.920e-168 Identity = 249/270 (92.22%), Postives = 253/270 (93.70%), Query Frame = 3 Query: 3 RCVAMAQKNIQDNDIPFDQALVTALRWGEEESTTKFCKDFSEWDSRRVIGTGSGGKNGVASAAGPAKSLAAGAQDKASVPGDVAVCTHGHSPTASSGNGHLNEDPASTSCEGQDRKVGPPXXXXDSLPSSPSPLKSFDFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFAFEILNGDNKEEGSKGHNSDGEGGGKDVGRADARKEGAAGGHYSSDAPDVGGIELCVDDARRARLYELHSVDLAFAT 812
+CVAMAQKNIQDND+PFDQALVTALRWGEEESTTKFCKDFSEWDSRRVIGTGSGGKNGVASAAGP KSLAAGAQDKASVPGDVAVC HGHSP ASSGNGHLNEDPASTSCEGQDR VGPP DSLPSSPSPLKSFDFILAGDVLYKHSLLEPFL TVRDMLA GGRMLLCH+PRAGVTYDIVERAFAQAGFAFEILNGDNKEEGSKGH+S GEGGGKDVGRADA EGAAGGH DAPDVGGIELCVDDARRARLYELHSVDL FAT
Sbjct: 85 KCVAMAQKNIQDNDVPFDQALVTALRWGEEESTTKFCKDFSEWDSRRVIGTGSGGKNGVASAAGPTKSLAAGAQDKASVPGDVAVCAHGHSPNASSGNGHLNEDPASTSCEGQDRNVGPPPPPRDSLPSSPSPLKSFDFILAGDVLYKHSLLEPFLRTVRDMLAAGGRMLLCHIPRAGVTYDIVERAFAQAGFAFEILNGDNKEEGSKGHSSGGEGGGKDVGRADAPTEGAAGGHC--DAPDVGGIELCVDDARRARLYELHSVDLTFAT 352
BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A8J2SGM5_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGM5_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 7.820e-10 Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 3 Query: 414 DFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERA 563
D +LAGDVLYK +L+EPFL + LA GGR LLCH+PRAGV++++VE A
Sbjct: 141 DLVLAGDVLYKRALVEPFLDALEAALAPGGRALLCHLPRAGVSHEVVEAA 190
BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A067BSN2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BSN2_SAPPC) HSP 1 Score: 67.0 bits (162), Expect = 5.560e-9 Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 3 Query: 411 FDFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFAF 587
FD ++AGDVLYK L++ L TVR LA GR +LCH+PRA V++D+++ A GF F
Sbjct: 161 FDVLIAGDVLYKGELVQLLLSTVRTWLAPHGRFVLCHIPRADVSHDVLQAALTAHGFRF 219
BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A7S2XZT6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZT6_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.010e-8 Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 3 Query: 411 FDFILAGDVLYKHSLLEPFLGTVRDMLA--------GGGRMLLCHVPRAGVTYDIVERAFAQAGF 581
FD ++AGDVLYKHSL +PF T R +L+ G G +LLCH+PRAGV + V+ Q GF
Sbjct: 128 FDVVIAGDVLYKHSLCQPFFETARQLLSSPTDENRDGDGFLLLCHIPRAGVEQEEVQAIAEQTGF 192
BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A1V9YS28_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YS28_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.020e-8 Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 3 Query: 411 FDFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFAFEI 593
FD +LAGDVLYK L+ L +V+ L G LLCH+PRA V++D+++ A A GFAF I
Sbjct: 161 FDRVLAGDVLYKGELVPLLLASVKTWLKSDGTFLLCHIPRADVSHDVLQSALAAHGFAFGI 221
BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A024TSL8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TSL8_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 7.490e-8 Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 3 Query: 411 FDFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFAFEIL 596
FD ++AGDVLYK L+ L T+ L+ G LCH+PRA V++++++R AG +F+I+
Sbjct: 165 FDVVVAGDVLYKSELVTLLLATINTWLSASGAFYLCHIPRADVSHEMLQRELTAAGLSFDII 226
BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A3R6VQW2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VQW2_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.490e-7 Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 3 Query: 411 FDFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFAFEIL 596
FD ++AGDVLYK L+ L T+ L+ G LCH+PRA V++++++R AG +F+I+
Sbjct: 165 FDVVVAGDVLYKSELVTLLLATINTWLSASGAFYLCHIPRADVSHEMLQRELTAAGLSFDII 226
BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A421F9P3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F9P3_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 5.880e-7 Identity = 31/73 (42.47%), Postives = 40/73 (54.79%), Query Frame = 3 Query: 381 LPSSPSPLKSFDFILAGDVLYKHSLLEPFLGTVRDMLAGGG---RMLLCHVPRAGVTYDIVERAFAQAGFAFE 590
L P D +LAGDVLYK LL TV +L GG +LCH+PRA VT+D+V++ +G FE
Sbjct: 157 LAELPGAFTDVDIVLAGDVLYKSELLPLLFATVTRVLEAGGDGRAFVLCHIPRADVTHDLVQKQIVDSGLQFE 229
BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A1V9ZFX3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFX3_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 6.860e-7 Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 3 Query: 411 FDFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFAFEI 593
FD I+AGDVLYK L+ L +V++ L G +LCH+PRA V+++++++A + AF I
Sbjct: 160 FDVIVAGDVLYKGELIPLLLASVKEWLQPNGIFVLCHIPRADVSHEVLQKALTEQNMAFAI 220
BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Match: A0A7S2W8K5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8K5_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 8.740e-7 Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 3 Query: 411 FDFILAGDVLYKHSLLEPFLGTVRDMLAGGGRMLLCHVPRAGVTYDIVERAFAQAGFA 584
FD +LAGDVLYK L F +V++++A G LLCH+PRAGV+ ++V +AG A
Sbjct: 177 FDVVLAGDVLYKQDLPALFFESVKELIAADGIALLCHIPRAGVSQELVVARAEEAGLA 234 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10016.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 19 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10016.76.1 >prot_E-siliculosus-1a_F_contig10016.76.1 ID=prot_E-siliculosus-1a_F_contig10016.76.1|Name=mRNA_E-siliculosus-1a_F_contig10016.76.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=267bp MAQKNIQDNDIPFDQALVTALRWGEEESTTKFCKDFSEWDSRRVIGTGSGback to top mRNA from alignment at E-siliculosus-1a_F_contig10016:730..2339+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10016.76.1 ID=mRNA_E-siliculosus-1a_F_contig10016.76.1|Name=mRNA_E-siliculosus-1a_F_contig10016.76.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1610bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10016:730..2339+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10016:730..2339+ >mRNA_E-siliculosus-1a_F_contig10016.76.1 ID=mRNA_E-siliculosus-1a_F_contig10016.76.1|Name=mRNA_E-siliculosus-1a_F_contig10016.76.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1602bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10016:730..2339+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |