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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10010.75.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 213 bits (541), Expect = 4.320e-60 Identity = 141/194 (72.68%), Postives = 141/194 (72.68%), Query Frame = 1 Query: 1 RLSQTFLPDDAVSCLHIQGGGRMVAEVTVVLTSCTGQASVGELDNLVEVTKSTACPRRVHFAAVSKKDRSTPPFPLVRAAPPLFQALDAVLNRESEAEQATYKASLGVQPGSALAAAAKNAAEEAAKTRRQAKQARDAERLRLEIVQIAEARRVEQRKEEEKXXXXXXXXXXXXXXXXNLREGEAQGGGMGAGR 582
RLSQTFL DDAVSCLHIQGGGRMVAE TVVLTSCTGQASVGELDNLVEVTKSTACPR VHFAAVSKKDRSTPPFPLVRAAPPLFQAL AKQARDAERLRLEIVQIAEARRVEQRKEE XXXXXXXXXXXXX NLREGEAQGGGMG GR
Sbjct: 162 RLSQTFLADDAVSCLHIQGGGRMVAEATVVLTSCTGQASVGELDNLVEVTKSTACPRGVHFAAVSKKDRSTPPFPLVRAAPPLFQAL--------------------------------------------AKQARDAERLRLEIVQIAEARRVEQRKEEXXXXXXXXXXXXXXXESENLREGEAQGGGMGVGR 311
BLAST of mRNA_E-siliculosus-1a_F_contig10010.75.1 vs. uniprot
Match: A0A6H5JP78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP78_9PHAE) HSP 1 Score: 157 bits (398), Expect = 9.010e-42 Identity = 103/188 (54.79%), Postives = 115/188 (61.17%), Query Frame = 1 Query: 1 RLSQTFLPDDAVSCLHIQGGGRMVAEVTVVLTSCTGQASVGELDNLVEVTKSTACPRRVHFAAVSKKDRSTPPFPLVRAAPPLFQALDAVLNRES------------------------------EAEQATYKASLGVQPGSALAAAAKNAAEEAAKTRRQAKQARDAERLRLEIVQIAEARRVEQRK 474
R SQTFLP DAVS L + GG R V E TV+LTS QAS GELDNLVEVTK+T C FAAVSKKDRSTPPFPLVRAAPPLFQA V R EAEQA +KASLGVQPG AAAA AAEEAA RRQA++ + E +LE+ ++A AR+ QRK
Sbjct: 127 RHSQTFLPGDAVSSLRVGGGDRTVTEATVILTSSCTQASAGELDNLVEVTKATTCCTGCQFAAVSKKDRSTPPFPLVRAAPPLFQAWYQVPRRACCWVCARDDARMQLIFFAADPCDPPIPGAGREAEQAAHKASLGVQPGWEAAAAATRAAEEAAIARRQARKIKAVENRQLELAELANARQHAQRK 314
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 621 |
| Model size | 625 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10010.75.1 >prot_E-siliculosus-1a_F_contig10010.75.1 ID=prot_E-siliculosus-1a_F_contig10010.75.1|Name=mRNA_E-siliculosus-1a_F_contig10010.75.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=207bp
RLSQTFLPDDAVSCLHIQGGGRMVAEVTVVLTSCTGQASVGELDNLVEVT
KSTACPRRVHFAAVSKKDRSTPPFPLVRAAPPLFQALDAVLNRESEAEQA
TYKASLGVQPGSALAAAAKNAAEEAAKTRRQAKQARDAERLRLEIVQIAE
ARRVEQRKEEEKEKRRKDDEEKRRKESENLREGEAQGGGMGAGRGEAAGQ
GVEAGKQ back to topmRNA from alignment at E-siliculosus-1a_F_contig10010:1708..2492- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10010.75.1 ID=mRNA_E-siliculosus-1a_F_contig10010.75.1|Name=mRNA_E-siliculosus-1a_F_contig10010.75.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=785bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10010:1708..2492- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCCTCTCTCAGACCTTTCTCCCCGATGACGCAGTGTCCTGTTTGCACAT
TCAAGGGGGGGGGCGCATGGTTGCGGAGGTCACTGTTGTTTTGACGTCCT
GTACCGGTCAAGCAAGCGTAGGAGAGCTGGACAACCTCGTCGAGGTGACG
AAGTCGACCGCGTGCCCTCGACGTGTCCACTTCGCTGCGGTCTCGAAGAA
GGACCGCTCGACCCCTCCGTTTCCTCTCGTGAGAGCGGCACCCCCGTTAT
TCCAAGCGCTGGTGAGTCGCTGCCGAAAGAGTAGAATGCCTGCCAAGTTG
AAGGAAGGCGGTGAAGCTGGCGAGTTGCACATGTTAGTGGTCTGCACCTG
AGACGCATGTATTTTGTCGCCCACCTACAATATGCCTGTTACGATACTCC
GACCCGTGTATCCGTGTATGCAGGATGCAGTTCTGAACAGGGAATCCGAG
GCTGAACAAGCCACGTACAAGGCGAGTCTAGGAGTGCAGCCCGGTTCGGC
ACTTGCAGCGGCCGCAAAAAATGCGGCGGAGGAGGCTGCTAAGACCAGGC
GGCAGGCGAAGCAAGCGAGAGACGCTGAACGCTTGCGGTTGGAGATAGTG
CAAATTGCGGAAGCAAGGCGGGTTGAACAGCGCAAGGAGGAGGAGAAGGA
GAAACGACGTAAGGACGACGAGGAAAAGCGTCGCAAGGAAAGTGAGAATC
TTCGGGAGGGAGAAGCGCAGGGTGGTGGCATGGGGGCAGGGAGAGGGGAA
GCCGCGGGACAGGGAGTGGAAGCGGGCAAGCAGGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10010:1708..2492- >mRNA_E-siliculosus-1a_F_contig10010.75.1 ID=mRNA_E-siliculosus-1a_F_contig10010.75.1|Name=mRNA_E-siliculosus-1a_F_contig10010.75.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1242bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10010:1708..2492- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCCTCTCTCAGACCTTTCTCCCCGATGACGCAGTGTCCTGTTTGCACAT
TCAAGGGGGGGGGCGCATGGTTGCGGAGGTCACTGTTGTTTTGACGTCCT
GTACCGGTCAAGCAAGCGTAGGAGAGCTGGACAACCTCGTCGAGGTGACG
AAGTCGACCGCGTGCCCTCGACGTGTCCACTTCGCTGCGGTCTCGAAGAA
GGACCGCTCGACCCCTCCGTTTCCTCTCGTGAGAGCGGCACCCCCGTTAT
TCCAAGCGCTGCGCCTCTCTCAGACCTTTCTCCCCGATGACGCAGTGTCC
TGTTTGCACATTCAAGGGGGGGGGCGCATGGTTGCGGAGGTCACTGTTGT
TTTGACGTCCTGTACCGGTCAAGCAAGCGTAGGAGAGCTGGACAACCTCG
TCGAGGTGACGAAGTCGACCGCGTGCCCTCGACGTGTCCACTTCGCTGCG
GTCTCGAAGAAGGACCGCTCGACCCCTCCGTTTCCTCTCGTGAGAGCGGC
ACCCCCGTTATTCCAAGCGCTGGATGCAGTTCTGAACAGGGAATCCGAGG
CTGAACAAGCCACGTACAAGGCGAGTCTAGGAGTGCAGCCCGGTTCGGCA
CTTGCAGCGGCCGCAAAAAATGCGGCGGAGGAGGCTGCTAAGACCAGGCG
GCAGGCGAAGCAAGCGAGAGACGCTGAACGCTTGCGGTTGGAGATAGTGC
AAATTGCGGAAGCAAGGCGGGTTGAACAGCGCAAGGAGGAGGAGAAGGAG
AAACGACGTAAGGACGACGAGGAAAAGCGTCGCAAGGAAAGTGAGAATCT
TCGGGAGGGAGAAGCGCAGGGTGGTGGCATGGGGGCAGGGAGAGGGGAAG
CCGCGGGACAGGGAGTGGAAGCGGGCAAGCAGGATGCAGTTCTGAACAGG
GAATCCGAGGCTGAACAAGCCACGTACAAGGCGAGTCTAGGAGTGCAGCC
CGGTTCGGCACTTGCAGCGGCCGCAAAAAATGCGGCGGAGGAGGCTGCTA
AGACCAGGCGGCAGGCGAAGCAAGCGAGAGACGCTGAACGCTTGCGGTTG
GAGATAGTGCAAATTGCGGAAGCAAGGCGGGTTGAACAGCGCAAGGAGGA
GGAGAAGGAGAAACGACGTAAGGACGACGAGGAAAAGCGTCGCAAGGAAA
GTGAGAATCTTCGGGAGGGAGAAGCGCAGGGTGGTGGCATGGGGGCAGGG
AGAGGGGAAGCCGCGGGACAGGGAGTGGAAGCGGGCAAGCAG back to top
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