mRNA_E-siliculosus-1a_F_contig1100.695.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1100.695.1
Unique NamemRNA_E-siliculosus-1a_F_contig1100.695.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1100.695.1 vs. uniprot
Match: D7FNK9_ECTSI (YCII-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK9_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 5.700e-79
Identity = 116/123 (94.31%), Postives = 116/123 (94.31%), Query Frame = 1 
Query:    1 EKHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDDYMIGSFFLVAATREEAQKFVDNDPFKKARTAGLCVWSTISLERYVSVVGVKPHSGNL 369
            EKHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDDYMIGSFFLVAATREEAQKFVDNDPFKK       VWSTISLERYVSVVGVKPHSGNL
Sbjct:    4 EKHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDDYMIGSFFLVAATREEAQKFVDNDPFKKEG-----VWSTISLERYVSVVGVKPHSGNL 121
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BLAST of mRNA_E-siliculosus-1a_F_contig1100.695.1 vs. uniprot
Match: A0A7S2V359_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V359_9STRA)

HSP 1 Score: 122 bits (306), Expect = 5.230e-33
Identity = 61/121 (50.41%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:    4 KHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDDYMIGSFFLVAATREEAQKFVDNDPFKKARTAGLCVWSTISLERYVSV-VGVKPHSG 363
            K L+ IHC+DD S    DGE  GGS KRM  Y  HK YQ ATANPE+P +I K++AGPL+ +   +MIGS F+V +T+EEA  F +NDPF KA      VW ++++ RYVS+  G+  H+G
Sbjct:   50 KQLWLIHCVDDDSSPLEDGETFGGSGKRMAVYAEHKVYQGATANPENPEYIRKLAAGPLLTDEGTHMIGSTFIVESTKEEAIAFNENDPFAKAG-----VWKSVNISRYVSIPAGLIAHAG 165
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1100.695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNK9_ECTSI5.700e-7994.31YCII-related n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A7S2V359_9STRA5.230e-3350.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1100contigE-siliculosus-1a_F_contig1100:1644..3194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size372
Model size373
Exons3
Ec32 orthologEc-01_005090.1
Ec32 ortholog descriptionDimeric alpha-beta barrel
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1100.695.1prot_E-siliculosus-1a_F_contig1100.695.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1100 1644..3194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927604.5679252-CDS-E-siliculosus-1a_F_contig1100:1643..17541622927604.5679252-CDS-E-siliculosus-1a_F_contig1100:1643..1754Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1100 1644..1754 +
1696318607.5067744-CDS-E-siliculosus-1a_F_contig1100:1643..17541696318607.5067744-CDS-E-siliculosus-1a_F_contig1100:1643..1754Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1100 1644..1754 +
1622927604.5831847-CDS-E-siliculosus-1a_F_contig1100:2098..22851622927604.5831847-CDS-E-siliculosus-1a_F_contig1100:2098..2285Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1100 2099..2285 +
1696318607.5179207-CDS-E-siliculosus-1a_F_contig1100:2098..22851696318607.5179207-CDS-E-siliculosus-1a_F_contig1100:2098..2285Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1100 2099..2285 +
1622927604.598092-CDS-E-siliculosus-1a_F_contig1100:3120..31941622927604.598092-CDS-E-siliculosus-1a_F_contig1100:3120..3194Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1100 3121..3194 +
1696318607.5277324-CDS-E-siliculosus-1a_F_contig1100:3120..31941696318607.5277324-CDS-E-siliculosus-1a_F_contig1100:3120..3194Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1100 3121..3194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1100.695.1

>prot_E-siliculosus-1a_F_contig1100.695.1 ID=prot_E-siliculosus-1a_F_contig1100.695.1|Name=mRNA_E-siliculosus-1a_F_contig1100.695.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=124bp
EKHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPR
FINKVSAGPLVDEVDDYMIGSFFLVAATREEAQKFVDNDPFKKARTAGLC
VWSTISLERYVSVVGVKPHSGNL*
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mRNA from alignment at E-siliculosus-1a_F_contig1100:1644..3194+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1100.695.1 ID=mRNA_E-siliculosus-1a_F_contig1100.695.1|Name=mRNA_E-siliculosus-1a_F_contig1100.695.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1551bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1100:1644..3194+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAAAAACACCTCTACGCAATACACTGCCTGGATGATCAGTCTTGTGGAAA
GGCAGATGGAGAACCTCGAGGCGGCTCGGCCAAGCGGATGGGAAATTATC
CTGCGCACAAGGTGTGTGATGCTACCGACTGCGGTAACAAACGCCGGAGC
CCATGCTAATCCCGGGGAATGTTGCTAGAGGGGGCAGAGGGAGGGGGAGG
GCGCGGTGCTGCAGTCATGCCTCAATTGTCATGCGTAGCAAAGTGACACC
GGACCTCTTTTTTTCTGCTGTGTAGAATCCAAAGGCGTCCCTGAGCCGCT
ACACTCAGGGGCGGAAAGTGAGGAAACGTTTTCGATTGGTCTTGACAACC
AGAAGACGGAATCGATTTATCTAGTCCGCTATTTCGCGTCCATGTCTGCA
CATGAGCGCTGAACAACTCTTGGTTGGTAATTGGTTCTCGAACTCGAACC
GGCAGGAATACCAGGCAGCCACGGCGAACCCGGAAGACCCGCGGTTCATC
AACAAGGTGTCGGCGGGGCCGTTGGTCGACGAAGTCGACGACTACATGAT
CGGTAGTTTCTTCTTGGTGGCGGCCACACGAGAGGAAGCTCAGAAATTTG
TCGACAACGACCCTTTCAAGAAGGCAAGAACTGCAGGGCTTTGTCGTTCA
TTGCCTAAACAACATATGAGCAACAGTCATGGACGTTAGCTGGAGGTCAC
AAGCACACGCGCAGCTAAGATACATGTGCAGGTCCGCCATGTTTCCCTGT
TTTGACTATGATCGTCTTTTCGGACCCCATACCACGATACCAAACAGTGC
ATCGAAAACCAAAACCAACGAGTTTTCATCACGAGTCACGATGGAAGAGG
TTTGGTCACGAATTCAAGCGCGCTGTGCGGTTTAGGTCAAAGTTTGCTTT
TTTGTCTCGTACTTCGAAACACGTTTTTTCCGTGTAGGGGCGGGACGTTG
TTGGGGTTGTTGGGCGAATGTTCCACGCTTGGCACTCAGACTCAGACCCT
CATCGTGTTCGCTCTGCACGTCGCCTGTTGCTGAAGCTACTACTGTTTCA
GCACTCCTTTGCCGTAAGGCACACCCGTATTGACTTTGTCGGGGATGTAC
AAGTGGAGTGTGTGTGGACGGCACTAGCCCTGCAACTAGTGGATAGCGGG
GTGCGAGTTTCTACGCGTCAACTTGCCACGTGATCAGTTGTCATGACTGA
TGGAGCAGCCGGTAATGCAGCCGTCGAACCATCAATCAGTTGGCTACAAC
ATCGCGATGAACGACAACGCATACGAACCACAGATTGTAGGTGTAGGTGT
TGTTGTGCCGCTGCTACTGCTGCTGCACTTGCTATGCATACAACACAACC
ATCACGGGCTTGACACCGATACAACACCATTTGTAGCCTCCATCCGTTGC
TTTCTAACCCGACCCACTTGCATTTCTGTTTTCCACTGGCGTCCCGTGTT
GTCCCGCAACAAACCACCAACAGGAAGGCGTTTGGAGTACAATCAGCTTG
GAGCGTTACGTGTCGGTTGTCGGGGTCAAGCCGCATTCCGGCAACTTGTG
A
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1100:1644..3194+

>mRNA_E-siliculosus-1a_F_contig1100.695.1 ID=mRNA_E-siliculosus-1a_F_contig1100.695.1|Name=mRNA_E-siliculosus-1a_F_contig1100.695.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=744bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1100:1644..3194+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAAAAACACCTCTACGCAATACACTGCCTGGATGATCAGTCTTGTGGAAA
GGCAGATGGAGAACCTCGAGGCGGCTCGGCCAAGCGGATGGGAAATTATC
CTGCGCACAAGGAAAAACACCTCTACGCAATACACTGCCTGGATGATCAG
TCTTGTGGAAAGGCAGATGGAGAACCTCGAGGCGGCTCGGCCAAGCGGAT
GGGAAATTATCCTGCGCACAAGGAATACCAGGCAGCCACGGCGAACCCGG
AAGACCCGCGGTTCATCAACAAGGTGTCGGCGGGGCCGTTGGTCGACGAA
GTCGACGACTACATGATCGGTAGTTTCTTCTTGGTGGCGGCCACACGAGA
GGAAGCTCAGAAATTTGTCGACAACGACCCTTTCAAGAAGGCAAGAACTG
CAGGGCTTTGAATACCAGGCAGCCACGGCGAACCCGGAAGACCCGCGGTT
CATCAACAAGGTGTCGGCGGGGCCGTTGGTCGACGAAGTCGACGACTACA
TGATCGGTAGTTTCTTCTTGGTGGCGGCCACACGAGAGGAAGCTCAGAAA
TTTGTCGACAACGACCCTTTCAAGAAGGCAAGAACTGCAGGGCTTTGCGT
TTGGAGTACAATCAGCTTGGAGCGTTACGTGTCGGTTGTCGGGGTCAAGC
CGCATTCCGGCAACTTGTGAGCGTTTGGAGTACAATCAGCTTGGAGCGTT
ACGTGTCGGTTGTCGGGGTCAAGCCGCATTCCGGCAACTTGTGA
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