mRNA_E-siliculosus-1a_F_contig1097.669.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1097.669.1
Unique NamemRNA_E-siliculosus-1a_F_contig1097.669.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1097.669.1 vs. uniprot
Match: A0A6H5LG67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG67_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 9.620e-83
Identity = 129/205 (62.93%), Postives = 138/205 (67.32%), Query Frame = 1 
Query:   88 DASRKTWLRCKETDFGPRTLFGGEKYNAWDMHASLSQPKATGSRISRPFVCFFCRTDIGPGVQYFRLPDPTGKSNGDSTQK----------------------------------------IHYIHGDGSECVGKEVPEDNTAPCAGCDRADVVLHGVMGVGKPQYFYCTRCAYTKRADINNDVQEFSEIKRLERVNGRTPSTPI 582
            DASRKT L+CKETDFGP TLF GEK NA DMH SLSQPK  G    R FVCF+CRTDIG GVQYFRLPDPTGK N D TQK                                        IHYIHGDGS CVGK+VPEDNTAPCAGCD  DVVLH +MG+ K +YFYC+ CAYTKRADI  DVQEFSEIKRLER+NG TPSTP+
Sbjct:    4 DASRKTCLQCKETDFGPGTLFRGEKCNACDMHVSLSQPKRKG----RAFVCFYCRTDIGEGVQYFRLPDPTGKVNLDGTQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIHYIHGDGSHCVGKDVPEDNTAPCAGCDSDDVVLHDMMGLRKTEYFYCSPCAYTKRADIITDVQEFSEIKRLERMNGGTPSTPL 204
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1097.669.1 vs. uniprot
Match: D8LGB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB1_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 1.000e-78
Identity = 127/195 (65.13%), Postives = 136/195 (69.74%), Query Frame = 1 
Query:    1 MPSTTSKAWGAIVDEHENQPGQLPKFTAGDASRKTWLRCKETDFGPRTLFGGEKYNAWDMHASLSQPKATGSRISRPFVCFFCRTDIGPGVQYFRLP-DPTGKSNGDSTQKIHYIHGDGSECVGKEVPEDNTAPCAGCDRADVVLHGVMGVGKPQYFYCTRCAYTKRADINNDVQEFSEIKRLERVNGRTPSTPI 582
            MPS  SKAWG I DEHENQPGQLPKFTA DASRKT    +     PR    G +      HA ++QP     R   P +C F    + P     R P  P  K+NGDSTQKIHYIHGDGSECVGKEVPEDNT PCAG  RADVVLHG MG GKPQYFYCTRCAYTKRA IN DVQEFSEIKRLER+NGRTPST +
Sbjct:    1 MPSKPSKAWGPIFDEHENQPGQLPKFTADDASRKTLAPVQGNGLRPRHALPGREIQRV-RHACVAQPAEADWRQEVPPLCVF----LLPDRHRSRCPVHPADKTNGDSTQKIHYIHGDGSECVGKEVPEDNTVPCAGRVRADVVLHG-MGAGKPQYFYCTRCAYTKRAAINIDVQEFSEIKRLERMNGRTPSTTV 189
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1097.669.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.020e-23
Identity = 66/192 (34.38%), Postives = 96/192 (50.00%), Query Frame = 1 
Query:   10 TTSKAWGAIVDEHENQPGQLPKFTAGDASRKTWLRCKETDFGPRTLFGGEKYNAWDMHA-----SLSQPKAT---GSRISRPFVCFFCRTDIGPGVQYFRLPDPTGKSNGDSTQ-KIHYIHGDGSECVGKEVPEDNTAPCAG-CDRA--DVVLHGVMGVGKPQYFYCTRCAYTKRADINNDVQEFSEIKRLE 549
            T ++ W A  ++ E    ++       A     +RC   D   +    G+K   W M       S+S P+     G + ++PF CFFCR  IG    Y R+P P G  N  + Q +  Y+H DG+ CVGK VP D  APCAG C ++  D  L+ +MG+G   YF+C  C Y +RA +   VQE   ++RL+
Sbjct:   10 TDAEMWAAFSEDAELF-SEVVSLQDSHARGLCCIRCGLMDDFQQP---GDK--GWGMRGCSESFSVSAPEEANNGGKKFAKPFKCFFCRGVIGYSTPYLRMPHPLGGVNAWNNQPRFVYLHTDGASCVGKTVPTDTKAPCAGHCGKSSPDHSLYDMMGIGNDTYFFCDDCKYKRRAGVLGGVQELLLLRRLQ 195
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1097.669.1 vs. uniprot
Match: D8LGB0_ECTSI (NAD dependent epimerase/dehydratase, putative (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB0_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.880e-8
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:  460 QYFYCTRCAYTKRADINNDVQEFSEIKRLER 552
            +YFYCTRCAYTKRA IN DVQEFSEIKRLER
Sbjct:  420 KYFYCTRCAYTKRAAINIDVQEFSEIKRLER 450
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1097.669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5LG67_9PHAE9.620e-8362.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGB1_ECTSI1.000e-7865.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPV6_9PHAE1.020e-2334.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGB0_ECTSI4.880e-890.32NAD dependent epimerase/dehydratase, putative (Par... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1097contigE-siliculosus-1a_F_contig1097:35042..36084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size582
Model size582
Exons3
Ec32 orthologEc-06_002730.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.GM
EC1.1.1.170
EggNOG OGsCOG0451@1,KOG1430@2759
EggNOG free text desc.3-beta-hydroxy-delta5-steroid dehydrogenase activity
GOsGO:0000252,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006629,GO:0006694,GO:0006696,GO:0008150,GO:0008152,GO:0008202,GO:0008204,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016491,GO:0016614,GO:0016616,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046165,GO:0055114,GO:0071704,GO:0097384,GO:0098827,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653
KEGG ModuleM00101
KEGG Pathwayko00100,ko01100,ko01130,map00100,map01100,map01130
KEGG ReactionR07494
KEGG koko:K07748
KEGG rclassRC01163
Preferred nameERG26
Seed eggNOG ortholog2880.D8LGB0
Seed ortholog evalue4.6e-07
Seed ortholog score61.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1097.669.1prot_E-siliculosus-1a_F_contig1097.669.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1097 35042..36084 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927600.0713477-CDS-E-siliculosus-1a_F_contig1097:35041..352021622927600.0713477-CDS-E-siliculosus-1a_F_contig1097:35041..35202Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1097 35042..35202 +
1696318605.1637092-CDS-E-siliculosus-1a_F_contig1097:35041..352021696318605.1637092-CDS-E-siliculosus-1a_F_contig1097:35041..35202Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1097 35042..35202 +
1622927600.0852714-CDS-E-siliculosus-1a_F_contig1097:35474..356431622927600.0852714-CDS-E-siliculosus-1a_F_contig1097:35474..35643Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1097 35475..35643 +
1696318605.1734135-CDS-E-siliculosus-1a_F_contig1097:35474..356431696318605.1734135-CDS-E-siliculosus-1a_F_contig1097:35474..35643Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1097 35475..35643 +
1622927600.0971966-CDS-E-siliculosus-1a_F_contig1097:35832..360841622927600.0971966-CDS-E-siliculosus-1a_F_contig1097:35832..36084Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1097 35833..36084 +
1696318605.1809719-CDS-E-siliculosus-1a_F_contig1097:35832..360841696318605.1809719-CDS-E-siliculosus-1a_F_contig1097:35832..36084Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1097 35833..36084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1097.669.1

>prot_E-siliculosus-1a_F_contig1097.669.1 ID=prot_E-siliculosus-1a_F_contig1097.669.1|Name=mRNA_E-siliculosus-1a_F_contig1097.669.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=194bp
MPSTTSKAWGAIVDEHENQPGQLPKFTAGDASRKTWLRCKETDFGPRTLF
GGEKYNAWDMHASLSQPKATGSRISRPFVCFFCRTDIGPGVQYFRLPDPT
GKSNGDSTQKIHYIHGDGSECVGKEVPEDNTAPCAGCDRADVVLHGVMGV
GKPQYFYCTRCAYTKRADINNDVQEFSEIKRLERVNGRTPSTPI
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1097:35042..36084+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1097.669.1 ID=mRNA_E-siliculosus-1a_F_contig1097.669.1|Name=mRNA_E-siliculosus-1a_F_contig1097.669.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1043bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1097:35042..36084+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTTCCACGACATCGAAGGCGTGGGGGGCCATCGTCGATGAGCACGA
AAACCAGCCAGGCCAACTGCCCAAGTTCACGGCAGGCGACGCTTCGCGCA
AGACTTGGCTCCGGTGCAAGGAAACGGACTTCGGGCCCCGCACGCTCTTC
GGGGGCGAGAAGTGAGTCTTCGCAGCAGGAGCACCATGTGACATCCTTGC
CCTACACTAGTTCGCGCAGCCTCCGCCGCCGCCGCCGCCGTGCTCTTGAG
TCTTCCTGCCCTTGTGGCGCCATGCGTTTGGCAGTCGAACAGTGGCTGTG
ACTGATATCGACCCGTTTACTCACAGCCACTGGACAAGTGGTGGTATGCA
GTTTTCCGCTTTTACTGTTCGCATATTTGGGGCTCGTATCAGTCCGCCGT
TTAGAAATCATTCCAAAACCCCTTGCGCGGCAGATATAACGCGTGGGACA
TGCATGCGTCGCTCAGCCAGCCGAAGGCGACTGGAAGCAGGATTTCCCGA
CCCTTTGTGTGTTTCTTCTGCCGGACCGACATCGGCCCCGGTGTCCAGTA
CTTCCGGCTCCCGGATCCCACCGGCAAATCGAACGGTGACAGTACCCAAA
AGGTACGTCTTGTCCTGTTTTCGTTTTCCCGGTTGCTGCGACCCTTGTTT
TCTTTTCCGGTCCTGTCAATAACCACCCCGTGTCGTCCGTTTCTTTCATT
TTCCGTTGTTGTTGCACCGTCCGCTCAATGCCCGATAACCAACCCATGTT
GTCCAAACAACAACTAATTAACTAATTCTCTTTTAATGCAGATCCACTAC
ATCCACGGGGATGGGTCCGAGTGTGTCGGCAAGGAAGTTCCCGAGGACAA
CACCGCCCCTTGCGCTGGGTGTGACCGCGCCGACGTCGTCCTCCATGGTG
TGATGGGGGTGGGCAAGCCGCAGTACTTTTACTGCACCAGGTGCGCCTAC
ACCAAGAGGGCGGACATCAATAACGACGTCCAGGAATTCTCCGAGATCAA
GCGCCTCGAGCGCGTGAACGGCAGGACGCCCAGCACGCCCATC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1097:35042..36084+

>mRNA_E-siliculosus-1a_F_contig1097.669.1 ID=mRNA_E-siliculosus-1a_F_contig1097.669.1|Name=mRNA_E-siliculosus-1a_F_contig1097.669.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1164bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1097:35042..36084+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTTCCACGACATCGAAGGCGTGGGGGGCCATCGTCGATGAGCACGA
AAACCAGCCAGGCCAACTGCCCAAGTTCACGGCAGGCGACGCTTCGCGCA
AGACTTGGCTCCGGTGCAAGGAAACGGACTTCGGGCCCCGCACGCTCTTC
GGGGGCGAGAAATGCCTTCCACGACATCGAAGGCGTGGGGGGCCATCGTC
GATGAGCACGAAAACCAGCCAGGCCAACTGCCCAAGTTCACGGCAGGCGA
CGCTTCGCGCAAGACTTGGCTCCGGTGCAAGGAAACGGACTTCGGGCCCC
GCACGCTCTTCGGGGGCGAGAAATATAACGCGTGGGACATGCATGCGTCG
CTCAGCCAGCCGAAGGCGACTGGAAGCAGGATTTCCCGACCCTTTGTGTG
TTTCTTCTGCCGGACCGACATCGGCCCCGGTGTCCAGTACTTCCGGCTCC
CGGATCCCACCGGCAAATCGAACGGTGACAGTACCCAAAAGATATAACGC
GTGGGACATGCATGCGTCGCTCAGCCAGCCGAAGGCGACTGGAAGCAGGA
TTTCCCGACCCTTTGTGTGTTTCTTCTGCCGGACCGACATCGGCCCCGGT
GTCCAGTACTTCCGGCTCCCGGATCCCACCGGCAAATCGAACGGTGACAG
TACCCAAAAGATCCACTACATCCACGGGGATGGGTCCGAGTGTGTCGGCA
AGGAAGTTCCCGAGGACAACACCGCCCCTTGCGCTGGGTGTGACCGCGCC
GACGTCGTCCTCCATGGTGTGATGGGGGTGGGCAAGCCGCAGTACTTTTA
CTGCACCAGGTGCGCCTACACCAAGAGGGCGGACATCAATAACGACGTCC
AGGAATTCTCCGAGATCAAGCGCCTCGAGCGCGTGAACGGCAGGACGCCC
AGCACGCCCATCATCCACTACATCCACGGGGATGGGTCCGAGTGTGTCGG
CAAGGAAGTTCCCGAGGACAACACCGCCCCTTGCGCTGGGTGTGACCGCG
CCGACGTCGTCCTCCATGGTGTGATGGGGGTGGGCAAGCCGCAGTACTTT
TACTGCACCAGGTGCGCCTACACCAAGAGGGCGGACATCAATAACGACGT
CCAGGAATTCTCCGAGATCAAGCGCCTCGAGCGCGTGAACGGCAGGACGC
CCAGCACGCCCATC
back to top