prot_E-siliculosus-1a_F_contig1095.656.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1095.656.1
Unique Name	prot_E-siliculosus-1a_F_contig1095.656.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length	523

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig1095.656.1 vs. uniprot
Match: D7G6S0_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6S0_ECTSI)

HSP 1 Score: 739 bits (1908), Expect = 3.120e-265
Identity = 454/465 (97.63%), Postives = 455/465 (97.85%), Query Frame = 0

Query:   45 MPQQYGQXXXXXXXXXXXPPPSPVVAGSWGERTGYVEEGYMRQDPNIVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAPLQSFYPPSLYGVPPSVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXXAGGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGPGVAAGRMQQTTHFRQPLLPGHNAGLRHHQGXXXXXXXXXXXXXXXXXXVAPGFTXXXXXXXXXXXXXXXXXXXQGDASATEVGIDSGPRGASTGGGDKYGARSNDHPHLAYIYRGRGTAADETGGYPSAGGGVDGKAAGDEKPQDQDSGYHGRDDSAYMAAPASSVGGSAASPDPKGVSRARSSSPSAAANAALPHQSLEHAMQTKLTM 509
            MPQQYGQ XXXX      PPPSPVVAGSWGERTGYVEEGYMRQDPNIVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAP+QSFYPPSLYGVP SVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXXAGGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGPGVAAGRMQQTTHFRQPLLPGHNAGLRHHQGXXXXXXXXXXXXXXXXXXVAPGFTXXXXXXXXXXXXXXXXXX QGDASATEVGIDSGPRGASTGGGDKYGARSNDHPHLAYIYRGRGTA DETGGYPSAGGGVDGKAAGDEKPQDQDSGYHGRDDSAYMAAPASSVGGSAASPDPKGVSRARSSSPSAAANAALPHQSLEHAMQTKLTM
Sbjct:    1 MPQQYGQQXXXXADGYGGPPPSPVVAGSWGERTGYVEEGYMRQDPNIVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAPMQSFYPPSLYGVPTSVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXXAGGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGPGVAAGRMQQTTHFRQPLLPGHNAGLRHHQGXXXXXXXXXXXXXXXXXXVAPGFTXXXXXXXXXXXXXXXXXX-QGDASATEVGIDSGPRGASTGGGDKYGARSNDHPHLAYIYRGRGTA-DETGGYPSAGGGVDGKAAGDEKPQDQDSGYHGRDDSAYMAAPASSVGGSAASPDPKGVSRARSSSPSAAANAALPHQSLEHAMQTKLTM 463

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BLAST of mRNA_E-siliculosus-1a_F_contig1095.656.1 vs. uniprot
Match: A0A6H5L5J0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J0_9PHAE)

HSP 1 Score: 530 bits (1365), Expect = 6.440e-185
Identity = 316/328 (96.34%), Postives = 319/328 (97.26%), Query Frame = 0

Query:  195 TTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGPGVAAGRMQQTTHFRQPLLPGHNAGLRHHQGXXXXXXXXXXXXXXXXXXVAPGFTXXXXXXXXXXXXXXXXXXXQGDASATEVGIDSGPRGASTGGGDKYGARSNDHPHLAYIYRGRGTAADETGGYPSAGGGVDGKAAGDEKPQDQDSGYHGRDDSAYMAAPASSVGGSAASPDPKGVSRARSSSPSAAANAALPHQSLEHAMQTKLTMGGNGSPPSAAQPS 522
            T   L GPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGPGVAAGRMQQT HFRQPLLP HNAGLRHHQGXXXXXXXXXXXXXXXXXXVAPGFTXXXXXXXXXXXXXXXXXXXQGDASAT+VGID+GPRGASTGGGDKYGA SNDHPHLAYIYRGRGTAADETGGYPSAGGGVDGKAAGDEKPQDQDSGYHGRDDSAYMAAP SSVGGSAASPDPKGVSRARSSSP AAANAALPHQSLEHAMQTKLT+GGNGSPPSAAQPS
Sbjct:    6 TGDGLAGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGPGVAAGRMQQTAHFRQPLLPAHNAGLRHHQGXXXXXXXXXXXXXXXXXXVAPGFTXXXXXXXXXXXXXXXXXXXQGDASATDVGIDAGPRGASTGGGDKYGAHSNDHPHLAYIYRGRGTAADETGGYPSAGGGVDGKAAGDEKPQDQDSGYHGRDDSAYMAAPTSSVGGSAASPDPKGVSRARSSSPGAAANAALPHQSLEHAMQTKLTIGGNGSPPSAAQPS 333

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BLAST of mRNA_E-siliculosus-1a_F_contig1095.656.1 vs. uniprot
Match: A0A6H5L539_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L539_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 9.030e-54
Identity = 123/150 (82.00%), Postives = 128/150 (85.33%), Query Frame = 0

Query:   63 PPPSPVVAGSWGERTGYVEEGYMRQDPNIVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAPLQSFYPPSLYGVPPSVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXXAGGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHI 212
            PPPSPVVAGSWGERTGYVEEGYMRQDPNIVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAPLQSFYPPSLYGVPPSVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXX GGNFYAG+       + G+P +T           LF+ HI
Sbjct:   17 PPPSPVVAGSWGERTGYVEEGYMRQDPNIVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAPLQSFYPPSLYGVPPSVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXXXGGNFYAGE-----DRSIGRPTKTAGKTN-----RLFLIHI 156

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BLAST of mRNA_E-siliculosus-1a_F_contig1095.656.1 vs. uniprot
Match: A0A7S2V9D2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9D2_9STRA)

HSP 1 Score: 148 bits (373), Expect = 6.720e-39
Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = 0

Query:  189 PGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 284
            PG PIQTT   QGP+GCNLFVFHIPN+MTN  L+ LF +FGNV+SARIMVEK TGRSRGFGF+SYDN  SA+ AI  MNG+QI HKRLKVQHKKDK
Sbjct:   41 PGAPIQTTPLGQGPEGCNLFVFHIPNSMTNVDLYHLFLRFGNVVSARIMVEKHTGRSRGFGFISYDNAVSAKDAIKGMNGFQIGHKRLKVQHKKDK 136

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BLAST of mRNA_E-siliculosus-1a_F_contig1095.656.1 vs. uniprot
Match: K3WGX7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGX7_GLOUD)

HSP 1 Score: 148 bits (374), Expect = 1.080e-37
Identity = 77/109 (70.64%), Postives = 86/109 (78.90%), Query Frame = 0

Query:  177 YAGQGGYA-RSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 284
            YA   GYA +   PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SA+ AI+ MNG+Q+  KRLKVQHKK+K
Sbjct:  116 YAQPYGYAPQVAGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIAGMNGFQVGRKRLKVQHKKEK 224

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BLAST of mRNA_E-siliculosus-1a_F_contig1095.656.1 vs. uniprot
Match: A0A8K1CK88_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK88_PYTOL)

HSP 1 Score: 147 bits (372), Expect = 2.080e-37
Identity = 75/104 (72.12%), Postives = 84/104 (80.77%), Query Frame = 0

Query:  182 GYA-RSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 284
            GYA +   PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ +GNVISARIMVEK TGRSRGFGFVSYDN  SAE+AI  MNG+Q+  KRLKVQHKK+K
Sbjct:  113 GYAPQVAGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFAPYGNVISARIMVEKETGRSRGFGFVSYDNAASAEQAIKAMNGFQVGRKRLKVQHKKEK 216

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BLAST of mRNA_E-siliculosus-1a_F_contig1095.656.1 vs. uniprot
Match: D0NCQ3_PHYIT (CUG-BP-and ETR-3-like factor, putative n=5 Tax=Phytophthora TaxID=4783 RepID=D0NCQ3_PHYIT)

HSP 1 Score: 147 bits (370), Expect = 5.690e-37
Identity = 73/96 (76.04%), Postives = 79/96 (82.29%), Query Frame = 0

Query:  189 PGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 284
            PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SAE AI  MNG+Q+  KRLKVQHKK+K
Sbjct:  133 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEK 228

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BLAST of mRNA_E-siliculosus-1a_F_contig1095.656.1 vs. uniprot
Match: A0A024URK9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024URK9_9STRA)

HSP 1 Score: 147 bits (371), Expect = 5.910e-37
Identity = 73/96 (76.04%), Postives = 78/96 (81.25%), Query Frame = 0

Query:  189 PGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 284
            PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F  FGNVISARIMVEK TGRSRGFGFVSYDN  SA+ AI  MNGYQ+  KRLKVQHKK+K
Sbjct:  159 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFQSFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGYQVGRKRLKVQHKKEK 254

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BLAST of mRNA_E-siliculosus-1a_F_contig1095.656.1 vs. uniprot
Match: G4ZPR3_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZPR3_PHYSP)

HSP 1 Score: 147 bits (370), Expect = 6.330e-37
Identity = 73/96 (76.04%), Postives = 79/96 (82.29%), Query Frame = 0

Query:  189 PGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 284
            PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SAE AI  MNG+Q+  KRLKVQHKK+K
Sbjct:  135 PGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEK 230

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BLAST of mRNA_E-siliculosus-1a_F_contig1095.656.1 vs. uniprot
Match: M4B497_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B497_HYAAE)

HSP 1 Score: 147 bits (370), Expect = 7.020e-37
Identity = 92/209 (44.02%), Postives = 110/209 (52.63%), Query Frame = 0

Query:   76 RTGYVEEGYMRQDPNIVAGAGTPIASTTSGNGEGTFMVSTGGANAMGAPLQSFYPPSLYGVPPSVYPYQQPGAFXXXXXXXXXXXXXXXXXXXXXXAGGNFYAGQGGYARSTNPGQPIQTTTNLQGPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGFVSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDK 284
            RT   ++  ++Q     AG   P     S   +G      G +   G P+Q  YPP  YG    +YP+ Q   +                                   +   PG PIQTT + QGP GCNLFVFHIPN MTN+ LF  F+ FGNVISARIMVEK TGRSRGFGFVSYDN  SA+ AI  MNG+Q+  KRLKVQHKK+K
Sbjct:   62 RTNAPQQQQLQQQQPTAAGFPQPQQQLDSQGSQGAAAAYGGYSQPYGQPMQ--YPPP-YGGSSYMYPFPQAYGYPP---------------------------------QIVGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEK 234

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1095.656.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1095.656.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G6S0_ECTSI	3.120e-265	97.63	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5L5J0_9PHAE	6.440e-185	96.34	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5L539_9PHAE	9.030e-54	82.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S2V9D2_9STRA	6.720e-39	76.04	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
K3WGX7_GLOUD	1.080e-37	70.64	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
A0A8K1CK88_PYTOL	2.080e-37	72.12	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
D0NCQ3_PHYIT	5.690e-37	76.04	CUG-BP-and ETR-3-like factor, putative n=5 Tax=Phy...	[more]
A0A024URK9_9STRA	5.910e-37	76.04	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
G4ZPR3_PHYSP	6.330e-37	76.04	Uncharacterized protein n=3 Tax=Phytophthora TaxID...	[more]
M4B497_HYAAE	7.020e-37	44.02	Uncharacterized protein n=1 Tax=Hyaloperonospora a...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 206..279 e-value: 5.1E-28 score: 109.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 207..277 e-value: 4.7E-22 score: 77.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 205..283 score: 19.382
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 186..290 e-value: 2.5E-29 score: 103.6
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 177..287
None	No IPR available	PANTHER	PTHR24012:SF686	CUGBP ELAV-LIKE FAMILY MEMBER 1	coord: 177..287
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 197..304

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig1095	contig	E-siliculosus-1a_F_contig1095:9463..19414 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1095.656.1	mRNA_E-siliculosus-1a_F_contig1095.656.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	mRNA	E-siliculosus-1a_F_contig1095 7934..19906 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1095.656.1 ID=prot_E-siliculosus-1a_F_contig1095.656.1|Name=mRNA_E-siliculosus-1a_F_contig1095.656.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=523bp
MSYQQQHQGAPDGSRRQQQAPPFPLLGTNGAAAAGRAPAAGVYGMPQQYG
QQQQQQADGYGGPPPSPVVAGSWGERTGYVEEGYMRQDPNIVAGAGTPIA
STTSGNGEGTFMVSTGGANAMGAPLQSFYPPSLYGVPPSVYPYQQPGAFP
GPYGGGAGGGAGGTAGGAGSTAGGNFYAGQGGYARSTNPGQPIQTTTNLQ
GPDGCNLFVFHIPNTMTNEALFRLFSKFGNVISARIMVEKATGRSRGFGF
VSYDNRDSAEKAISQMNGYQIEHKRLKVQHKKDKERERYVTAPSPRMMGP
GVAAGRMQQTTHFRQPLLPGHNAGLRHHQGGDDKLPPPSPAADTGGAGVA
PGFTVSGGGGGGGGGGGGEDDHHQGDASATEVGIDSGPRGASTGGGDKYG
ARSNDHPHLAYIYRGRGTAADETGGYPSAGGGVDGKAAGDEKPQDQDSGY
HGRDDSAYMAAPASSVGGSAASPDPKGVSRARSSSPSAAANAALPHQSLE
HAMQTKLTMGGNGSPPSAAQPS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom