mRNA_E-siliculosus-1a_F_contig1094.653.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1094.653.1
Unique NamemRNA_E-siliculosus-1a_F_contig1094.653.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI)

HSP 1 Score: 588 bits (1515), Expect = 8.070e-206
Identity = 330/351 (94.02%), Postives = 331/351 (94.30%), Query Frame = 1 
Query:   79 AGGTKAILATANRTERGQRLRAVNWVKQVRNELTSAEFALNLNGATRGTSTGXXXXXX---VPPGINGQSTSPGAPSSXXXXXXXXXXXXSGTKSEIDFETIAERLEASLRALQEGRPLSLLEAISPDELREITARLKVNLTKIKKITQAEGRSRDGTGGDSAGARSAGEAGGEEGSSWRDAGGILGEMTEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNTKEIPEDSAVMLELRAIGEELEGRQEQLRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 1122
            AGGTKAILATANRTERGQRLRAVNWVKQVRNELTSAEFALNLNGATRG STGXXXXXX    PPGINGQSTSPGAPSS             G+KSEIDFETIAERLEASLRALQ GRPLSLLEAISPDELREITARLKVNLTKIKKITQAEGRSRDGTGGDSAGARSAGEAGGEEGSSWRDAGGILGEMTEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKN KEIPEDSAVMLELRAIGEELEGRQEQLRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ
Sbjct:   29 AGGTKAILATANRTERGQRLRAVNWVKQVRNELTSAEFALNLNGATRGMSTGXXXXXXXXXTPPGINGQSTSPGAPSSSAAPAGAGATP--GSKSEIDFETIAERLEASLRALQAGRPLSLLEAISPDELREITARLKVNLTKIKKITQAEGRSRDGTGGDSAGARSAGEAGGEEGSSWRDAGGILGEMTEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNIKEIPEDSAVMLELRAIGEELEGRQEQLRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 377
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BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE)

HSP 1 Score: 545 bits (1404), Expect = 1.960e-186
Identity = 316/377 (83.82%), Postives = 322/377 (85.41%), Query Frame = 1 
Query:   79 AGGTKAILATANRTERGQRLRAVNWVKQ---------------------VRNELTSAEFALNLNGATRGTSTGXXXXXX-----VPPGINGQSTSPGAPSSXXXXXXXXXXXXSGTKSEIDFETIAERLEASLRALQEGRPLSLLEAISPDELREITARLKVNLTKIKKITQAEGRSRDGTGGDSAGARSAGEAG---GEEGSSWRDAGGILGEMTEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNTKEIPEDSAVMLELRAIGEELEGRQEQLRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 1122
            AGGT AILATANRTERGQRLRAVNWVKQ                     VRNELTSAEFALNLNGATRG ST  XXXXX      PPGINGQS SPGAPS              G+KSEIDFETIAERLEASLRALQ GRP+SLLEAISPDELREITARLK NLTKIKKITQAEGRSRDGTGGDSAG RSAG AG   GEEGSSWRDAGGILGEMTEG+NVNLKDVKVPEF+LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDE+GGLAAGGSHGGG KNTKEIPEDSAVMLELRAIGEELEGRQEQL+RELDALKAEARAQEATWKTLERRKA RRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ
Sbjct:  187 AGGTNAILATANRTERGQRLRAVNWVKQGAAFMPLMGAACDGRASLSRQVRNELTSAEFALNLNGATRGMSTDGXXXXXXXXXXTPPGINGQSASPGAPS--FSAAPAGATATPGSKSEIDFETIAERLEASLRALQAGRPMSLLEAISPDELREITARLKANLTKIKKITQAEGRSRDGTGGDSAGTRSAGAAGAAGGEEGSSWRDAGGILGEMTEGMNVNLKDVKVPEFNLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEQGGLAAGGSHGGGHKNTKEIPEDSAVMLELRAIGEELEGRQEQLQRELDALKAEARAQEATWKTLERRKAIRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 561
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BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: A0A835YNT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNT1_9STRA)

HSP 1 Score: 128 bits (321), Expect = 8.610e-31
Identity = 100/262 (38.17%), Postives = 134/262 (51.15%), Query Frame = 1 
Query:  100 LATANRTERGQRLRAVNWVKQVRNELTSAEFALNLNGATRGTSTGXXXXXXVPPGINGQSTSPGAPSSXXXXXXXXXXXXSGTKSEIDFETIAERLEASLRALQEGR--PLSLLEAISPDELREITARLKVNLTKIKKITQAEGRSRDGTGGDSAGARSAGEAGGEEGSSWRDAG-------------------GILGEMTEGINVNLKDVK-----VPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEE 807
            +  A+RTERGQ+LRA+NWVKQVRN+LTSAEFAL L+    G  +         PG+  +  S                        ID+++IA RLE++LR + EGR   L L +A++ +EL E+ ARL   ++ +      + +  D    +  G R   E   +E +   D                     G   ++  G +      K      PEF LFVRDDGTVDWDGAIQSGREVARFG+ELW+RINGQ+P EE
Sbjct:    3 MTAASRTERGQKLRALNWVKQVRNDLTSAEFALQLDQGLSGAESRGAGGKV--PGLRRKWRS------------------------IDYDSIAVRLESNLRLINEGRVRSLGLDKAVTEEELAELQARLVKTMSDVSAAIVKQDQVDD----EERGLRK--EKFKQEQALHADTAPVEATNFAVTAPAKVAPPNGSSAQLVNGASAADAPQKGGAKLTPEFGLFVRDDGTVDWDGAIQSGREVARFGKELWERINGQDPVEE 232
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BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: A0A7S1NU99_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NU99_9EUGL)

HSP 1 Score: 83.2 bits (204), Expect = 1.280e-13
Identity = 99/344 (28.78%), Postives = 156/344 (45.35%), Query Frame = 1 
Query:  121 ERGQRLRAVNWVKQVRNELTSAEFALNLNGATRGTSTGXXXXXXVPPGINGQSTSPGAPSSXXXXXXXXXXXXSGTKSEIDFETIAERLEASLRALQEGRPLSLLEAISPDELREITARLKVN----LTKIKKITQAEGRSRDGTG---GDSAGARSAGEAGGEEGSSWRDAGGILGEMTEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNTKEIPEDSAVM---LELRAIGEELEGRQEQLRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 1122
            +R QRL+ + WVK+V+++LT AEFAL +N + R            PPG   +    G                      ID+  IA++L++SL A  E +   L++    + L+      K N    + K+ ++ Q      D +G   G      +AG+A  E   + +                    K    +LFVRDDGTVDWDGA++SG+E+A FGQE+WDR+NG+  D    L          +N      D  ++    EL A+ +ELE    Q R    A+  EAR    T + +   +A   +++  + +    +++ L  +D+DMERIC  +EQ
Sbjct:  241 DRLQRLKELAWVKEVKDDLTYAEFALTINPSIRRNH---------PPGYKIRRKVTG----------------------IDYFKIADKLDSSL-ARMERKKTWLIDVTEINALKARLRNTKKNVDELIVKMHELEQQADSEEDESGKKDGKEGTPSAAGKA--EVDGTDKSKXXXXXXXXXXXXXXXXXDKPLRLELFVRDDGTVDWDGAMESGKELAVFGQEVWDRLNGRTEDGYRSLP---------ENLFASDTDPLILKTKAELEALEQELETTT-QARNAKQAVLWEART---TGEPVSN-EARVELKALAQSVLELRRRVALQRLDLDMERICLYLEQ 536
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BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: A0A7S4DP72_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DP72_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 3.660e-8
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  682 FDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNTKEIPEDSAVMLELRAIGEELEGRQEQL 936
            F L VR+DGTVDWDG I+ GREVA+FGQ+LW R+N ++  +E      G+ G  +     I ++S  + EL    ++++ R +QL
Sbjct:  130 FRLIVREDGTVDWDGVIEGGREVAQFGQDLWQRLNAKSSQDELSSMMMGAQGERELALNNIIQNSQKVKELNDKIQQIQHRVDQL 214
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BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: A0A4D9D1V1_9STRA (LETM1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.640e-8
Identity = 54/158 (34.18%), Postives = 82/158 (51.90%), Query Frame = 1 
Query:  688 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNTKEIPEDSAVMLELRAIGEELEGRQEQLRRELDALKAEARAQEATW-KTLERRKANRR------------IRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 1122
            +FVR+DGTVDWDGA QSG+E+A++  E+ +R+ G++P EE   A          +T     DS+  ++L             L+R L  L++E RA E    K LE  KA R+            +R  ++Q     ++++L  +D+DMER C  IEQ
Sbjct:  379 VFVREDGTVDWDGAFQSGKELAKYSGEVLERLQGKSPGEEAPPAKA--------STSLATIDSSPGMQL-------------LQRYLQELESELRAAEDERDKILELHKALRKQNLDVSKAQKGELRIAEDQAVEMKRRVELQRLDMDMERACAYIEQ 515
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BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: K0RSL1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RSL1_THAOC)

HSP 1 Score: 64.3 bits (155), Expect = 1.460e-7
Identity = 52/155 (33.55%), Postives = 83/155 (53.55%), Query Frame = 1 
Query:  688 LFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDE---EGGLAAGGS-HGGGDKNTKEIPEDSAVML---ELRAIGEELEGRQEQ----LRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIE 1119
            L+VRDDGT+DWDGA+Q    + +FG  +W RING++P+E   +GG+++    H  G   T +IPE  A+     +L  + +EL   + +    L   L A +A A    AT   + R K    IR+  +QLD    ++    ++ ++ERI   +E
Sbjct:  277 LYVRDDGTIDWDGALQDREALKKFGSAVWSRINGRDPEEGGDDGGVSSADEFHSSGKAVTAKIPETVAIREKKDQLDRLKKELNEMETEHTKLLNSALSAGQAVANVNFATIDPILRVK----IRTSLDQLDKKRAEVSFQMLNYELERIYTYLE 427
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BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: A0A1Z5JMY9_FISSO (LETM1 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMY9_FISSO)

HSP 1 Score: 62.0 bits (149), Expect = 9.070e-7
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:  637 TEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPD 801
            T   N   KD K  + +L+VRDDGTVDWDGA+Q    + +FG+ +W RING++PD
Sbjct:  257 TTETNAREKDSKTNDPNLYVRDDGTVDWDGALQDQAALRKFGKAVWARINGRDPD 311
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: A0A7S2A4H7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A4H7_TRICV)

HSP 1 Score: 60.1 bits (144), Expect = 3.280e-6
Identity = 49/162 (30.25%), Postives = 83/162 (51.23%), Query Frame = 1 
Query:  679 EFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNTKEIPEDSAV---MLELRAIGEELEGRQEQLRRELD------------ALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIE 1119
            + +L++RDDGT+DWDGAIQ    + +FG  +W RING +P+  G  +        ++  K+  E+  V   ++E  AI +E + R ++LR ELD            A+KA +        +L+  K    IRS  E L+   +++    ++ ++ERI   +E
Sbjct:  129 DMNLYIRDDGTIDWDGAIQDRAAIKKFGSSVWARINGVDPESIGDES--------ERELKKEEEEKKVTVKIVETEAIRKE-KARLDELRAELDKTQANHTALLNSAVKAGSAVANVNLASLDP-KLRAEIRSSAEALEKKQEEVSFQMLNYELERIFTYLE 280
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Match: B8C2L4_THAPS (LETM1 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2L4_THAPS)

HSP 1 Score: 59.3 bits (142), Expect = 7.810e-6
Identity = 37/99 (37.37%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:  619 GILGEMTEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREVARFGQELWDRINGQNPDEEGGLAA--GGSHGGGDKNTKEIPEDSAVMLELRAIGE 909
            G  G  TE    N      P   L+VR+DGT+DWDGA+Q    + +FG  +W RINGQ+P+  G  +   GG+   GD         +A ++E  AI E
Sbjct:  280 GGKGNNTEATATNTATTFDPS--LYVREDGTIDWDGALQDREALKKFGSAVWSRINGQDPETSGDASEEEGGALTAGDDFHSPSKAVTAKIVETDAIRE 376
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1094.653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LP03_ECTSI8.070e-20694.02LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5LQ87_9PHAE1.960e-18683.82LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YNT1_9STRA8.610e-3138.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1NU99_9EUGL1.280e-1328.78Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4DP72_9EUKA3.660e-841.18Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A4D9D1V1_9STRA9.640e-834.18LETM1 domain-containing protein n=1 Tax=Nannochlor... [more]
K0RSL1_THAOC1.460e-733.55Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1Z5JMY9_FISSO9.070e-750.91LETM1 domain-containing protein n=2 Tax=Fistulifer... [more]
A0A7S2A4H7_TRICV3.280e-630.25Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
B8C2L4_THAPS7.810e-637.37LETM1 domain-containing protein n=1 Tax=Thalassios... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1094contigE-siliculosus-1a_F_contig1094:32836..37240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size1122
Model size1122
Exons7
Ec32 orthologEc-06_007100.1
Ec32 ortholog descriptionLETM1-like
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EggNOG OGsKOG1043@1,KOG1043@2759
EggNOG free text desc.calcium export from the mitochondrion
Seed eggNOG ortholog2880.D8LP03
Seed ortholog evalue6.5e-167
Seed ortholog score593.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927597.1744297-CDS-E-siliculosus-1a_F_contig1094:32835..329971622927597.1744297-CDS-E-siliculosus-1a_F_contig1094:32835..32997Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 32836..32997 +
1696318603.944705-CDS-E-siliculosus-1a_F_contig1094:32835..329971696318603.944705-CDS-E-siliculosus-1a_F_contig1094:32835..32997Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 32836..32997 +
1622927597.1892982-CDS-E-siliculosus-1a_F_contig1094:33357..336511622927597.1892982-CDS-E-siliculosus-1a_F_contig1094:33357..33651Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 33358..33651 +
1696318603.9533775-CDS-E-siliculosus-1a_F_contig1094:33357..336511696318603.9533775-CDS-E-siliculosus-1a_F_contig1094:33357..33651Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 33358..33651 +
1622927597.198467-CDS-E-siliculosus-1a_F_contig1094:34513..347441622927597.198467-CDS-E-siliculosus-1a_F_contig1094:34513..34744Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 34514..34744 +
1696318603.9608061-CDS-E-siliculosus-1a_F_contig1094:34513..347441696318603.9608061-CDS-E-siliculosus-1a_F_contig1094:34513..34744Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 34514..34744 +
1622927597.208125-CDS-E-siliculosus-1a_F_contig1094:35791..358691622927597.208125-CDS-E-siliculosus-1a_F_contig1094:35791..35869Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 35792..35869 +
1696318603.9684918-CDS-E-siliculosus-1a_F_contig1094:35791..358691696318603.9684918-CDS-E-siliculosus-1a_F_contig1094:35791..35869Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 35792..35869 +
1622927597.2190003-CDS-E-siliculosus-1a_F_contig1094:36297..364141622927597.2190003-CDS-E-siliculosus-1a_F_contig1094:36297..36414Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 36298..36414 +
1696318603.9784586-CDS-E-siliculosus-1a_F_contig1094:36297..364141696318603.9784586-CDS-E-siliculosus-1a_F_contig1094:36297..36414Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 36298..36414 +
1622927597.2285128-CDS-E-siliculosus-1a_F_contig1094:36673..368021622927597.2285128-CDS-E-siliculosus-1a_F_contig1094:36673..36802Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 36674..36802 +
1696318603.9865074-CDS-E-siliculosus-1a_F_contig1094:36673..368021696318603.9865074-CDS-E-siliculosus-1a_F_contig1094:36673..36802Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 36674..36802 +
1622927597.2401311-CDS-E-siliculosus-1a_F_contig1094:37129..372401622927597.2401311-CDS-E-siliculosus-1a_F_contig1094:37129..37240Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 37130..37240 +
1696318603.9944096-CDS-E-siliculosus-1a_F_contig1094:37129..372401696318603.9944096-CDS-E-siliculosus-1a_F_contig1094:37129..37240Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1094 37130..37240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1094.653.1prot_E-siliculosus-1a_F_contig1094.653.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1094 32836..37240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1094.653.1

>prot_E-siliculosus-1a_F_contig1094.653.1 ID=prot_E-siliculosus-1a_F_contig1094.653.1|Name=mRNA_E-siliculosus-1a_F_contig1094.653.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=374bp
GGGGGGGGGGGGGGGGAGEAAAAPAPAGGTKAILATANRTERGQRLRAVN
WVKQVRNELTSAEFALNLNGATRGTSTGGGGGGGVPPGINGQSTSPGAPS
SSAAPAPAAATATSGTKSEIDFETIAERLEASLRALQEGRPLSLLEAISP
DELREITARLKVNLTKIKKITQAEGRSRDGTGGDSAGARSAGEAGGEEGS
SWRDAGGILGEMTEGINVNLKDVKVPEFDLFVRDDGTVDWDGAIQSGREV
ARFGQELWDRINGQNPDEEGGLAAGGSHGGGDKNTKEIPEDSAVMLELRA
IGEELEGRQEQLRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLD
NATKQLQLHNIDVDMERICYNIEQ
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mRNA from alignment at E-siliculosus-1a_F_contig1094:32836..37240+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1094.653.1 ID=mRNA_E-siliculosus-1a_F_contig1094.653.1|Name=mRNA_E-siliculosus-1a_F_contig1094.653.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4405bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1094:32836..37240+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGC
CGGGGAGGCGGCAGCAGCACCAGCACCAGCCGGGGGAACGAAAGCTATCT
TGGCTACCGCTAACAGGACGGAGAGGGGGCAGCGGCTGCGGGCGGTGAAC
TGGGTCAAGCAGGTGCGGTGTTTGAGGGGCGTGTTGTTCGACAGCACTGG
GGTTTGGCCACATCAAATTTCGTGACGACCGGTTCGAATTTCGTGTGTGT
GTGAATGTTACATAACCGCGCACACGTGCTTGGGAATAGCGTTCCAGTTT
CTTTGGGGGCGGGATGGCCAACGGTGGTATCCGTCGAATCATACCACGAA
TAACCACGAGGGACGAAAACGAAACCGTGAACGAACGTCCCCCGAAACAC
TGCTATGTCGTAGGTAGACATGGCCATCTCGTTCAACAAACCGCTACATA
GATACACAGAGAGCGGCTTATATGCCGCTCATCGGTGCGGCCTGTGACGG
CTGCGCTTCTCTCTCCCGCCAGGTCCGAAACGAGCTCACGTCCGCGGAGT
TTGCTCTCAACCTCAACGGAGCAACGAGAGGGACGAGCACCGGCGGCGGC
GGCGGCGGCGGCGTCCCCCCGGGCATCAATGGCCAGAGTACCAGCCCCGG
GGCCCCGTCTTCTTCCGCCGCTCCAGCACCAGCAGCAGCAACAGCAACAT
CCGGTACCAAGAGCGAGATCGACTTCGAGACGATCGCGGAGAGATTGGAG
GCGAGCCTCCGAGCGCTGCAGGAGGGCAGGCCGTTGTCTCTGCTCGAAGC
CATCTCCCCGGATGAGGTGAGAACCACAGACCAAGGGACCGACCAACATG
TCATTGTTGCTGTCTTGACGTTAAAAACCCTCCCGCTCTCCGCTCAGTAC
CTTCTAACAGCTGCGCTGACGCGGGACGCCTTCCGCGGTCAAGGCGATAC
TGCTACCCTGCTATCCAGGATGAAGTTGTTCATTTGTGCCAAGTCAAAAG
ACATATGTTGATATTTTTGTGTTGCTGTTGCTTATCTTTCGTTGTCCAGA
AATCACGGCGAGGATGCGTCTCGTGTCGCAACCCCAACAGCTGCGTGTTT
CCTTGTTCTTCCTTGAGAGACGTACGCGTACGCCCGCGCTCAGCGTGATA
GCCCTCGGCGTGAATGCCCGTGCAACAGTAGGTCGGCCCCGCGCACGTTC
TTGCTGATGGTGCAGGGTGCCGGGTGTACCTGATGATGTTGGTTTTCGTG
TGTGTGCTGCCTGTGTAGCGGTTGTCTTGTCAGCAATCGCCGTCAAAATC
TTGCTAGTTTTCGTCCCAGTTTCCTTAAGCAGCAGGTCACCACGACCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCC
CCCCCCCCNNNNNNNNNNTGGGGGTGTGTTCGCTCCCTAGCCCCCCCCAA
ACCTGCTTTCTCTCCCCCCCCCTTTCCTTAGCGCGCCGGCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCGGCACCGGACCGAACCGT
GCGCAACAAAACACCGGTCCCGGTGTCGAAACACGGAACGTTTCGCCCTC
GTCGATCCCCTGCGCGCACGCTACAAAGCTCCGGGAAATCACGGCTCGGT
TGAAAGTAAACCTGACCAAGATTAAGAAGATCACGCAGGCAGAAGGGAGG
AGTAGGGACGGGACAGGGGGCGACTCCGCAGGAGCAAGAAGCGCGGGGGA
GGCGGGGGGGGAAGAAGGCAGCAGCTGGAGAGACGCGGGGGGTATCCTCG
GCGAGATGACGGAAGGGATAAACGTTAACCTCAAGGATGTCAAAGTGCCG
GAGTTCGATGTGAGATGACCGTAGTGTGCCGTTGGAAGGGAGGGGGGCGG
GGTTTTTGTGATGGGGGTCTGTTTTGTGCTTTTTTTGTGCTGGTGATGGC
GTTGGTGTTGGCGTGGGGGGAGGTGCTCGTAGCAGTGCATGCCGTAGTCG
TTAGACCGTTGACCTCGGATCCCTACAAAGCCGGCACGGAGCACGCCATG
TTTTCACCGGACCAGTGTTGGGAGGGGGGGGGTTCTTTCTCTCCTCTTGC
TGCTGGTGCTCCTACTCATGCTTGATGCCGTTCTTTCGTTGTTTTTGCTC
TCGTCGCCAATGCTCAGCCCGCAGTTGTCACCGACTCCTTTCTCGTCATT
TTTATATTTTTTGAGGGGCTACTGCTGCTGTACCCCTTCCATATCTCATA
TTTCGCCATCGTGGTGGGGGCACCATCTTATTCGGACCGCCTTGTGCGAT
TGGTAGGTTTATGAGGAAATAGAACAGGGAGGGGGTACGCAGACCGTATT
CCCTAACCCTAACCCTAACCCAACTCCCCCGATTGATTGTATGCTTCATC
CAACATGTCTACATGATACATATAACATGTCTACATGATACATATAACAT
GTCTACATGATACATAAAACATGTCTACATGATACATCTAACATGTCTAC
ATGATACATCTAACATGTCTACATGATGCATCTACCATGTCTACATGATA
CATCTAACATGTCTACATGATGCATCTACCATGTCCATGATACATCTAAC
ATGTCTACATGATGCATCTACCATGTCTACATGATACATGTAAACATGTC
TACATGATACGAATAGCCCTGCGAATGTTACTGTCTCTTTCTCCCCGCCT
GTGTACCGCTGTAGACCGCCACGGTAATTTTGAGTGAAGAGTGCTCTCAA
GTTTCCAAACGTCCCGTCTCGCTCTTCACCGCCCTCGCGCATGAGTCTGT
CCGTGTAGCGCGGTCGATTATATCGGTAAGGAAGGAACACAAGCGTAAAC
GCGGCAGCACACGTCTCTTTATTTTTGTCTCCTTTTTTTTTCGGTGGGAC
TGTCAGCTTTTCGTGCGCGACGACGGGACCGTGGATTGGGACGGGGCCAT
CCAGTCCGGCCGGGAGGTGGCTCGCTTCGGACAGGTATGGAGGTTAGGTG
ATGGTGTGATTACCGCCGCTGAGCATGTGTGTGTACGTGTGTGGTTGATC
AGGGAGGAGTTGTGCTCGTAGGAGGCACACGAATACATGCAAGTGGTTTT
TGAGTTGTTCTGTGGTGTGCTCGGGTAGCACTCGCTAGCTTTGCGAAGAA
AAAGGCGACATGGGGTGTCCTGACGCTTCGCAGTGGCCGTGCGCAAAGAA
AGTCAAGGAATAGGTCAGGATTCTCAAGGTAAGAATACAAACAGGACCGT
CACATGGGTATGTACACGAACCGTCAAATGTGTTACCATGGGTTTTACTA
AGGCTCGCGTCGTTCCAACACATGAAGCGCCGAAGTTTTCTGTGTGTTTA
TGCGTACATATGTGCCTCTGCCTTTGCTTTTCTCCCCTCCGTCTGCCACT
CACGAATGGCAGGAGTTGTGGGACAGAATCAACGGCCAGAATCCCGATGA
GGAAGGGGGGCTCGCGGCTGGGGGGTCTCACGGGGGGGGCGACAAAAACA
CCAAGGAGATCCCCGAGGACTCAGCGGTGGTGAGTACCACTCTTTTTCTT
GTTTTTTGTTTTTGGCGACTCGGTCGGGCAACTCGACGGCTTTTTTTTTT
TTTTTATCCGTAGCTGAGCTGAGAAGGTTCTTGAGCTGCGTTTTTCCAGT
CAAAGCGGGTGAAGGGAGACGAGTTTTGAGGCGTTTTTTTTTATATACAT
GCGTACGTGTAGCGTTTGTTGGCTGCCGGCCAACGTTCGTTCGTTCGTTC
CTGCCGACGACGACGACGACAACGACGACGTCCAATAGATGCTGGAGCTG
CGCGCTATCGGCGAGGAGCTGGAGGGCAGGCAGGAGCAGCTGCGGCGGGA
GCTGGACGCCCTCAAGGCGGAGGCTCGGGCGCAGGAGGCCACCTGGAAGA
CGCTGGAACGAAGAAAAGTGAGGGATGGGGGCGGGGCGGTTATCTACGTC
TTTGTTCACTACGTGCCTTCCCTTTGTCTTGCATTATCTAGGGGCGGGCT
TGTACGGTATGGTAGGTTTATATTGAAAATATCACCCAGTAGAACAGGCG
TGGGTGTTTTCAGGCTTAACACACGTGTCCACGCTCTTTGAGGTGGTACC
GCCTGGTTTTCTTGTCCATGGCATGATAAGACCGCTGGTCGTTTTTTGTA
TTACGGTTAGTATCAGCTGGCACCCTGTTACCGGTTCTATTATTGGCCAA
TCCGCTGAGCGCGCATCGACCGGCGTCTGTGTTCCCCTTCCCAGGCTAAC
CGCCGCATTCGATCTAAGCAAGAGCAGCTCGACAACGCCACGAAGCAGCT
ACAGCTGCACAACATCGACGTTGACATGGAGCGCATCTGCTACAACATCG
AGCAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1094:32836..37240+

>mRNA_E-siliculosus-1a_F_contig1094.653.1 ID=mRNA_E-siliculosus-1a_F_contig1094.653.1|Name=mRNA_E-siliculosus-1a_F_contig1094.653.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2244bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1094:32836..37240+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGC
CGGGGAGGCGGCAGCAGCACCAGCACCAGCCGGGGGAACGAAAGCTATCT
TGGCTACCGCTAACAGGACGGAGAGGGGGCAGCGGCTGCGGGCGGTGAAC
TGGGTCAAGCAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGAGCCGGGGAGGCGGCAGCAGCACCAGCACCAGCCGGGGGAA
CGAAAGCTATCTTGGCTACCGCTAACAGGACGGAGAGGGGGCAGCGGCTG
CGGGCGGTGAACTGGGTCAAGCAGGTCCGAAACGAGCTCACGTCCGCGGA
GTTTGCTCTCAACCTCAACGGAGCAACGAGAGGGACGAGCACCGGCGGCG
GCGGCGGCGGCGGCGTCCCCCCGGGCATCAATGGCCAGAGTACCAGCCCC
GGGGCCCCGTCTTCTTCCGCCGCTCCAGCACCAGCAGCAGCAACAGCAAC
ATCCGGTACCAAGAGCGAGATCGACTTCGAGACGATCGCGGAGAGATTGG
AGGCGAGCCTCCGAGCGCTGCAGGAGGGCAGGCCGTTGTCTCTGCTCGAA
GCCATCTCCCCGGATGAGGTCCGAAACGAGCTCACGTCCGCGGAGTTTGC
TCTCAACCTCAACGGAGCAACGAGAGGGACGAGCACCGGCGGCGGCGGCG
GCGGCGGCGTCCCCCCGGGCATCAATGGCCAGAGTACCAGCCCCGGGGCC
CCGTCTTCTTCCGCCGCTCCAGCACCAGCAGCAGCAACAGCAACATCCGG
TACCAAGAGCGAGATCGACTTCGAGACGATCGCGGAGAGATTGGAGGCGA
GCCTCCGAGCGCTGCAGGAGGGCAGGCCGTTGTCTCTGCTCGAAGCCATC
TCCCCGGATGAGCTCCGGGAAATCACGGCTCGGTTGAAAGTAAACCTGAC
CAAGATTAAGAAGATCACGCAGGCAGAAGGGAGGAGTAGGGACGGGACAG
GGGGCGACTCCGCAGGAGCAAGAAGCGCGGGGGAGGCGGGGGGGGAAGAA
GGCAGCAGCTGGAGAGACGCGGGGGGTATCCTCGGCGAGATGACGGAAGG
GATAAACGTTAACCTCAAGGATGTCAAAGTGCCGGAGTTCGATCTCCGGG
AAATCACGGCTCGGTTGAAAGTAAACCTGACCAAGATTAAGAAGATCACG
CAGGCAGAAGGGAGGAGTAGGGACGGGACAGGGGGCGACTCCGCAGGAGC
AAGAAGCGCGGGGGAGGCGGGGGGGGAAGAAGGCAGCAGCTGGAGAGACG
CGGGGGGTATCCTCGGCGAGATGACGGAAGGGATAAACGTTAACCTCAAG
GATGTCAAAGTGCCGGAGTTCGATCTTTTCGTGCGCGACGACGGGACCGT
GGATTGGGACGGGGCCATCCAGTCCGGCCGGGAGGTGGCTCGCTTCGGAC
AGCTTTTCGTGCGCGACGACGGGACCGTGGATTGGGACGGGGCCATCCAG
TCCGGCCGGGAGGTGGCTCGCTTCGGACAGGAGTTGTGGGACAGAATCAA
CGGCCAGAATCCCGATGAGGAAGGGGGGCTCGCGGCTGGGGGGTCTCACG
GGGGGGGCGACAAAAACACCAAGGAGATCCCCGAGGACTCAGCGGTGGAG
TTGTGGGACAGAATCAACGGCCAGAATCCCGATGAGGAAGGGGGGCTCGC
GGCTGGGGGGTCTCACGGGGGGGGCGACAAAAACACCAAGGAGATCCCCG
AGGACTCAGCGGTGATGCTGGAGCTGCGCGCTATCGGCGAGGAGCTGGAG
GGCAGGCAGGAGCAGCTGCGGCGGGAGCTGGACGCCCTCAAGGCGGAGGC
TCGGGCGCAGGAGGCCACCTGGAAGACGCTGGAACGAAGAAAAATGCTGG
AGCTGCGCGCTATCGGCGAGGAGCTGGAGGGCAGGCAGGAGCAGCTGCGG
CGGGAGCTGGACGCCCTCAAGGCGGAGGCTCGGGCGCAGGAGGCCACCTG
GAAGACGCTGGAACGAAGAAAAGCTAACCGCCGCATTCGATCTAAGCAAG
AGCAGCTCGACAACGCCACGAAGCAGCTACAGCTGCACAACATCGACGTT
GACATGGAGCGCATCTGCTACAACATCGAGCAGGCTAACCGCCGCATTCG
ATCTAAGCAAGAGCAGCTCGACAACGCCACGAAGCAGCTACAGCTGCACA
ACATCGACGTTGACATGGAGCGCATCTGCTACAACATCGAGCAG
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