mRNA_E-siliculosus-1a_F_contig1092.636.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1092.636.1
Unique NamemRNA_E-siliculosus-1a_F_contig1092.636.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1092.636.1 vs. uniprot
Match: D7FHU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU7_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 8.460e-47
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:    1 MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT 234
            MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT
Sbjct:    1 MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT 78
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BLAST of mRNA_E-siliculosus-1a_F_contig1092.636.1 vs. uniprot
Match: A0A6H5JR72_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR72_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.290e-38
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGWHRTEGGGT 234
            MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAG HR +GGGT
Sbjct:  787 MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLELLNARMDGTARGFAKSFGAGLHRAKGGGT 864
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1092.636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHU7_ECTSI8.460e-47100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JR72_9PHAE3.290e-3896.15Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1092contigE-siliculosus-1a_F_contig1092:2538..3076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size237
Model size237
Exons2
Ec32 orthologEc-00_000500.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927593.935345-CDS-E-siliculosus-1a_F_contig1092:2537..25881622927593.935345-CDS-E-siliculosus-1a_F_contig1092:2537..2588Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 2538..2588 +
1696318602.5790586-CDS-E-siliculosus-1a_F_contig1092:2537..25881696318602.5790586-CDS-E-siliculosus-1a_F_contig1092:2537..2588Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 2538..2588 +
1622927593.9497514-CDS-E-siliculosus-1a_F_contig1092:2890..30761622927593.9497514-CDS-E-siliculosus-1a_F_contig1092:2890..3076Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 2891..3076 +
1696318602.5884838-CDS-E-siliculosus-1a_F_contig1092:2890..30761696318602.5884838-CDS-E-siliculosus-1a_F_contig1092:2890..3076Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1092 2891..3076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1092.636.1prot_E-siliculosus-1a_F_contig1092.636.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1092 2538..3076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1092.636.1

>prot_E-siliculosus-1a_F_contig1092.636.1 ID=prot_E-siliculosus-1a_F_contig1092.636.1|Name=mRNA_E-siliculosus-1a_F_contig1092.636.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=79bp
MGRALRSLPLTASKPLEDAARVCNSLLRTNARALGDSRLSLSRSVTQLEL
LNARMDGTARGFAKSFGAGWHRTEGGGT*
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mRNA from alignment at E-siliculosus-1a_F_contig1092:2538..3076+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1092.636.1 ID=mRNA_E-siliculosus-1a_F_contig1092.636.1|Name=mRNA_E-siliculosus-1a_F_contig1092.636.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=539bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1092:2538..3076+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGCGAGCGCTCCGGAGCTTGCCCTTGACGGCCAGCAAGCCGTTGGA
GGTACGGCTAACCACGATTCTTTGTGATGCTCTTTTCTCGGAGGGGTGCG
GTGGAGTGAGAGGGCGATTATGTCCCCTCTTTTTCTCTGGCTTCGTTGAC
GTTCAAAGGCCGCTTGACCTAGCATCATCGGCCGGCTTATGAAATGTTTC
GACCACGCTGGGACCCCGCACGATTCGGTTTGGCTACTGGCTACAAAGTA
CCTCGGTGCTTTTGAGCGTTTGACTTTGACGTGTTTGTTTCCCTTGTCCT
GCAATTTGACCCCTCGCCGCCCTTCCCATCTCCCGTCCTCCCCTTCGAAC
CAGGACGCGGCTCGTGTGTGCAACTCCCTCTTGAGAACCAACGCCCGAGC
TCTGGGTGACAGCCGTTTATCGCTTTCGCGGTCTGTCACCCAGCTTGAGC
TGTTGAACGCTCGCATGGACGGTACCGCCAGAGGTTTCGCAAAATCCTTC
GGTGCGGGTTGGCATCGCACGGAGGGGGGGGGCACCTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1092:2538..3076+

>mRNA_E-siliculosus-1a_F_contig1092.636.1 ID=mRNA_E-siliculosus-1a_F_contig1092.636.1|Name=mRNA_E-siliculosus-1a_F_contig1092.636.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=474bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1092:2538..3076+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGCGAGCGCTCCGGAGCTTGCCCTTGACGGCCAGCAAGCCGTTGGA
GATGGGGCGAGCGCTCCGGAGCTTGCCCTTGACGGCCAGCAAGCCGTTGG
AGGACGCGGCTCGTGTGTGCAACTCCCTCTTGAGAACCAACGCCCGAGCT
CTGGGTGACAGCCGTTTATCGCTTTCGCGGTCTGTCACCCAGCTTGAGCT
GTTGAACGCTCGCATGGACGGTACCGCCAGAGGTTTCGCAAAATCCTTCG
GTGCGGGTTGGCATCGCACGGAGGGGGGGGGCACCTAGGACGCGGCTCGT
GTGTGCAACTCCCTCTTGAGAACCAACGCCCGAGCTCTGGGTGACAGCCG
TTTATCGCTTTCGCGGTCTGTCACCCAGCTTGAGCTGTTGAACGCTCGCA
TGGACGGTACCGCCAGAGGTTTCGCAAAATCCTTCGGTGCGGGTTGGCAT
CGCACGGAGGGGGGGGGCACCTAG
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