prot_E-siliculosus-1a_F_contig1089.607.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1089.607.1
Unique Nameprot_E-siliculosus-1a_F_contig1089.607.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length376
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1089.607.1 vs. uniprot
Match: A0A6H5JM01_9PHAE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM01_9PHAE)

HSP 1 Score: 525 bits (1352), Expect = 1.040e-183
Identity = 312/340 (91.76%), Postives = 319/340 (93.82%), Query Frame = 0 
Query:   37 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTRTKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGPSSNVHLHYTLLPLEVLVRTRGPQFHSHAARTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALANPEDXXXXXXXDHVQEVTSESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPAGSXXXXXXXXXXXXXXXXANGQNGRNKELAERQQKGAAQTSARKRRMLGQDSNSSGVDGXXXXXXXXXXXXELPVEMRNLVSSMEGGFDG 376
            MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRA+RTTLAELTRLVLRDQGIMGVSRAGKTRTKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSG SSN+ LHYTLLPLEVLVRTRGPQFHSHAA+TFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALANPEDXXXXXXXD+VQEVTSESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPA +                ANGQNGRNKELAERQQKGAAQ SARKRRMLGQDSNS+GVDGXXXXXXXXXXXXELPVEMR+LVSSME GFDG
Sbjct:    1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRAERTTLAELTRLVLRDQGIMGVSRAGKTRTKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSSNIRLHYTLLPLEVLVRTRGPQFHSHAAKTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALANPEDXXXXXXXDNVQEVTSESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPADNDSKGKSASA-------ANGQNGRNKELAERQQKGAAQRSARKRRMLGQDSNSNGVDGXXXXXXXXXXXXELPVEMRSLVSSMEEGFDG 333
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BLAST of mRNA_E-siliculosus-1a_F_contig1089.607.1 vs. uniprot
Match: D7FMS5_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS5_ECTSI)

HSP 1 Score: 488 bits (1256), Expect = 3.160e-171
Identity = 293/299 (97.99%), Postives = 294/299 (98.33%), Query Frame = 0 
Query:   37 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTRTKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGPSSNVHLHYTLLPLEVLVRTRGPQFHSHAARTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALANPEDXXXXXXXDHVQEVTSESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPAGSXXXXXXXXXXXXXXXXANGQNGRNKELAERQQKGAAQTSARKRRMLG 335
            MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKT TKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSG S N+ LHYTLLPLEVLVRTRGPQFHSHAARTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALANPEDXXXXXXXDHVQEVT ESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPAGSXXXXXXXXXXXXXXXXANGQNGRNKELAERQQKGAAQTSARKRRMLG
Sbjct:    1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTITKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSGNIRLHYTLLPLEVLVRTRGPQFHSHAARTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALANPEDXXXXXXXDHVQEVTPESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPAGSXXXXXXXXXXXXXXXXANGQNGRNKELAERQQKGAAQTSARKRRMLG 299
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1089.607.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JM01_9PHAE1.040e-18391.76DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
D7FMS5_ECTSI3.160e-17197.99DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 55..330

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1089contigE-siliculosus-1a_F_contig1089:24432..32675 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1089.607.1mRNA_E-siliculosus-1a_F_contig1089.607.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1089 24430..32675 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1089.607.1 ID=prot_E-siliculosus-1a_F_contig1089.607.1|Name=mRNA_E-siliculosus-1a_F_contig1089.607.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=376bp
NPSTCSLALQRLARVCSAHLAKECERCAGRGHHPIAMAFLLESQMPLVAL
ESSRRKLVLSVIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMG
VSRAGKTRTKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGPS
SNVHLHYTLLPLEVLVRTRGPQFHSHAARTFSKVAGLVVDCFLRHGRRTL
PDVKEELLRREGEAARARKALANPEDEDEDDEDDHVQEVTSESIQKSFEE
LVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPAGSGGGGGGNDSKSK
SASAANGQNGRNKELAERQQKGAAQTSARKRRMLGQDSNSSGVDGGNGDG
GDSDDDDELPVEMRNLVSSMEGGFDG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039748RPC3