mRNA_E-siliculosus-1a_F_contig10765.536.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10765.536.1
Unique NamemRNA_E-siliculosus-1a_F_contig10765.536.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10765.536.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 2.180e-33
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = 3 
Query:    6 MTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTLGELNRLVAMAEDLGYMVSRHVMNED 230
            MTQAQISSFSALSTLCGG   SLEQ+R+LVEALGINRSSPGTGLSETGTLGE+NRLVAMAEDLG MVSRHVMNED
Sbjct:  621 MTQAQISSFSALSTLCGGRHKSLEQVRQLVEALGINRSSPGTGLSETGTLGEVNRLVAMAEDLGGMVSRHVMNED 695
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BLAST of mRNA_E-siliculosus-1a_F_contig10765.536.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 4.040e-33
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 3 
Query:    3 HMTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTLGELNRLVAMAEDLGYMVSRHVMNED 230
            HMTQAQISSFSALSTLCGGS   LEQ+R+LVEAL INR SPGTGLSETGTLGELNRLVAMAEDLG MVSRHVMNED
Sbjct:  408 HMTQAQISSFSALSTLCGGSHKRLEQVRQLVEALDINRFSPGTGLSETGTLGELNRLVAMAEDLGDMVSRHVMNED 483
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BLAST of mRNA_E-siliculosus-1a_F_contig10765.536.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.910e-32
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 3 
Query:    3 HMTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTLGELNRLVAMAEDLGYMVSRHVMNED 230
            H+TQAQISSFS+LSTLCGGS+ASLEQ+ +LVEALGINRSSPGTGL+ TGTLGELNRLVAMAEDLG MVSRHV NED
Sbjct:  435 HITQAQISSFSSLSTLCGGSQASLEQVGQLVEALGINRSSPGTGLNGTGTLGELNRLVAMAEDLGDMVSRHVTNED 510
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BLAST of mRNA_E-siliculosus-1a_F_contig10765.536.1 vs. uniprot
Match: A0A6H5K9X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.370e-30
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 3 
Query:    6 MTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTLGELNRLVAMAEDLGYMV 206
            MTQAQ+SSFSALSTLCGGS++SLEQ+R+LVEALGINRSSPGTGL ET TLGELNRLVAMAEDL  +V
Sbjct:    1 MTQAQVSSFSALSTLCGGSRSSLEQVRQLVEALGINRSSPGTGLGETATLGELNRLVAMAEDLDDIV 67
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10765.536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FUA0_ECTSI2.180e-3390.67Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
D7FUA2_ECTSI4.040e-3389.47Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FUA1_ECTSI1.910e-3286.84Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
A0A6H5K9X6_9PHAE5.370e-3085.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10765contigE-siliculosus-1a_F_contig10765:257..739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size225
Model size230
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.7.11.1
EggNOG OGs2QQYD@2759,COG4886@1
EggNOG free text desc.protein serine/threonine kinase activity
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
KEGG ModuleM00686
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG koko:K04730,ko:K04733
Seed eggNOG ortholog2880.D7FUA0
Seed ortholog evalue3.1e-28
Seed ortholog score130.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10765.536.1prot_E-siliculosus-1a_F_contig10765.536.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10765 262..739 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927577.039878-UTR-E-siliculosus-1a_F_contig10765:256..2611622927577.039878-UTR-E-siliculosus-1a_F_contig10765:256..261Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10765 257..261 +
1696318594.6088126-UTR-E-siliculosus-1a_F_contig10765:256..2611696318594.6088126-UTR-E-siliculosus-1a_F_contig10765:256..261Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10765 257..261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927577.0491798-CDS-E-siliculosus-1a_F_contig10765:261..4621622927577.0491798-CDS-E-siliculosus-1a_F_contig10765:261..462Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10765 262..462 +
1696318594.6185157-CDS-E-siliculosus-1a_F_contig10765:261..4621696318594.6185157-CDS-E-siliculosus-1a_F_contig10765:261..462Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10765 262..462 +
1622927577.0580893-CDS-E-siliculosus-1a_F_contig10765:715..7391622927577.0580893-CDS-E-siliculosus-1a_F_contig10765:715..739Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10765 716..739 +
1696318594.6264038-CDS-E-siliculosus-1a_F_contig10765:715..7391696318594.6264038-CDS-E-siliculosus-1a_F_contig10765:715..739Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10765 716..739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10765.536.1

>prot_E-siliculosus-1a_F_contig10765.536.1 ID=prot_E-siliculosus-1a_F_contig10765.536.1|Name=mRNA_E-siliculosus-1a_F_contig10765.536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=75bp
MTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTL
GELNRLVAMAEDLGYMVSRHVMNED
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mRNA from alignment at E-siliculosus-1a_F_contig10765:257..739+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10765.536.1 ID=mRNA_E-siliculosus-1a_F_contig10765.536.1|Name=mRNA_E-siliculosus-1a_F_contig10765.536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=483bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10765:257..739+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCACATGACTCAGGCTCAGATTTCTTCTTTTTCGGCGTTGAGCACGCTA
TGTGGAGGGAGTAAAGCAAGCCTGGAGCAGATTAGAAAGCTTGTTGAAGC
ACTGGGCATCAATCGCTCTTCTCCCGGCACGGGGCTTAGCGAGACGGGCA
CGCTCGGGGAGCTGAACAGGCTGGTGGCAATGGCCGAAGATCTAGGCTAC
ATGGTGGTGAGCGTTGCACTGTAGTCTAGGGATCCCTCGGCCCACACCAA
GAACGGGTGAGGGCCTGGCGGACGCATGTTAGCCAACTTTTTATGTGGTA
CACCTTTTGTACTACATAACCTGGAAGACTTTCCATTTTGCAGGTGTCCT
TGTGCCGGTGGCCCTTCCCGCACTCGCATAGGTCGCATTCCTCCTGCTTC
CCTAACGATGTTTTGGCCCTACGTTGCTGCAAACTGCGATGTATTGCCTG
AGTGCGCAGTCGAGGCACGTGATGAATGAAGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10765:257..739+

>mRNA_E-siliculosus-1a_F_contig10765.536.1 ID=mRNA_E-siliculosus-1a_F_contig10765.536.1|Name=mRNA_E-siliculosus-1a_F_contig10765.536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10765:257..739+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACTCAGGCTCAGATTTCTTCTTTTTCGGCGTTGAGCACGCTATGTGG
AGGGAGTAAAGCAAGCCTGGAGCAGATTAGAAAGCTTGTTGAAGCACTGG
GCATCAATCGCTCTTCTCCCGGCACGGGGCTTAGCGAGACGGGCACGCTC
GGGGAGCTGAACAGGCTGGTGGCAATGGCCGAAGATCTAGGCTACATGGT
GATGACTCAGGCTCAGATTTCTTCTTTTTCGGCGTTGAGCACGCTATGTG
GAGGGAGTAAAGCAAGCCTGGAGCAGATTAGAAAGCTTGTTGAAGCACTG
GGCATCAATCGCTCTTCTCCCGGCACGGGGCTTAGCGAGACGGGCACGCT
CGGGGAGCTGAACAGGCTGGTGGCAATGGCCGAAGATCTAGGCTACATGG
TGTCGAGGCACGTGATGAATGAAGACTCGAGGCACGTGATGAATGAAGAC
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