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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10765.536.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI) HSP 1 Score: 130 bits (326), Expect = 2.180e-33 Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = 3 Query: 6 MTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTLGELNRLVAMAEDLGYMVSRHVMNED 230
MTQAQISSFSALSTLCGG SLEQ+R+LVEALGINRSSPGTGLSETGTLGE+NRLVAMAEDLG MVSRHVMNED
Sbjct: 621 MTQAQISSFSALSTLCGGRHKSLEQVRQLVEALGINRSSPGTGLSETGTLGEVNRLVAMAEDLGGMVSRHVMNED 695
BLAST of mRNA_E-siliculosus-1a_F_contig10765.536.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI) HSP 1 Score: 129 bits (324), Expect = 4.040e-33 Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 3 Query: 3 HMTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTLGELNRLVAMAEDLGYMVSRHVMNED 230
HMTQAQISSFSALSTLCGGS LEQ+R+LVEAL INR SPGTGLSETGTLGELNRLVAMAEDLG MVSRHVMNED
Sbjct: 408 HMTQAQISSFSALSTLCGGSHKRLEQVRQLVEALDINRFSPGTGLSETGTLGELNRLVAMAEDLGDMVSRHVMNED 483
BLAST of mRNA_E-siliculosus-1a_F_contig10765.536.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI) HSP 1 Score: 127 bits (319), Expect = 1.910e-32 Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 3 Query: 3 HMTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTLGELNRLVAMAEDLGYMVSRHVMNED 230
H+TQAQISSFS+LSTLCGGS+ASLEQ+ +LVEALGINRSSPGTGL+ TGTLGELNRLVAMAEDLG MVSRHV NED
Sbjct: 435 HITQAQISSFSSLSTLCGGSQASLEQVGQLVEALGINRSSPGTGLNGTGTLGELNRLVAMAEDLGDMVSRHVTNED 510
BLAST of mRNA_E-siliculosus-1a_F_contig10765.536.1 vs. uniprot
Match: A0A6H5K9X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X6_9PHAE) HSP 1 Score: 110 bits (274), Expect = 5.370e-30 Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 3 Query: 6 MTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTLGELNRLVAMAEDLGYMV 206
MTQAQ+SSFSALSTLCGGS++SLEQ+R+LVEALGINRSSPGTGL ET TLGELNRLVAMAEDL +V
Sbjct: 1 MTQAQVSSFSALSTLCGGSRSSLEQVRQLVEALGINRSSPGTGLGETATLGELNRLVAMAEDLDDIV 67
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 225 |
| Model size | 230 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01001 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | S |
| EC | 2.7.11.1 |
| EggNOG OGs | 2QQYD@2759,COG4886@1 |
| EggNOG free text desc. | protein serine/threonine kinase activity |
| GOs | GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025 |
| KEGG Module | M00686 |
| KEGG Pathway | ko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169 |
| KEGG ko | ko:K04730,ko:K04733 |
| Seed eggNOG ortholog | 2880.D7FUA0 |
| Seed ortholog evalue | 3.1e-28 |
| Seed ortholog score | 130.6 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927577.039878-UTR-E-siliculosus-1a_F_contig10765:256..261 | 1622927577.039878-UTR-E-siliculosus-1a_F_contig10765:256..261 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig10765 257..261 + |
| 1696318594.6088126-UTR-E-siliculosus-1a_F_contig10765:256..261 | 1696318594.6088126-UTR-E-siliculosus-1a_F_contig10765:256..261 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig10765 257..261 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10765.536.1 >prot_E-siliculosus-1a_F_contig10765.536.1 ID=prot_E-siliculosus-1a_F_contig10765.536.1|Name=mRNA_E-siliculosus-1a_F_contig10765.536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=75bp
MTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTL
GELNRLVAMAEDLGYMVSRHVMNED back to topmRNA from alignment at E-siliculosus-1a_F_contig10765:257..739+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10765.536.1 ID=mRNA_E-siliculosus-1a_F_contig10765.536.1|Name=mRNA_E-siliculosus-1a_F_contig10765.536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=483bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10765:257..739+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCACATGACTCAGGCTCAGATTTCTTCTTTTTCGGCGTTGAGCACGCTA
TGTGGAGGGAGTAAAGCAAGCCTGGAGCAGATTAGAAAGCTTGTTGAAGC
ACTGGGCATCAATCGCTCTTCTCCCGGCACGGGGCTTAGCGAGACGGGCA
CGCTCGGGGAGCTGAACAGGCTGGTGGCAATGGCCGAAGATCTAGGCTAC
ATGGTGGTGAGCGTTGCACTGTAGTCTAGGGATCCCTCGGCCCACACCAA
GAACGGGTGAGGGCCTGGCGGACGCATGTTAGCCAACTTTTTATGTGGTA
CACCTTTTGTACTACATAACCTGGAAGACTTTCCATTTTGCAGGTGTCCT
TGTGCCGGTGGCCCTTCCCGCACTCGCATAGGTCGCATTCCTCCTGCTTC
CCTAACGATGTTTTGGCCCTACGTTGCTGCAAACTGCGATGTATTGCCTG
AGTGCGCAGTCGAGGCACGTGATGAATGAAGAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10765:257..739+ >mRNA_E-siliculosus-1a_F_contig10765.536.1 ID=mRNA_E-siliculosus-1a_F_contig10765.536.1|Name=mRNA_E-siliculosus-1a_F_contig10765.536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10765:257..739+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACTCAGGCTCAGATTTCTTCTTTTTCGGCGTTGAGCACGCTATGTGG
AGGGAGTAAAGCAAGCCTGGAGCAGATTAGAAAGCTTGTTGAAGCACTGG
GCATCAATCGCTCTTCTCCCGGCACGGGGCTTAGCGAGACGGGCACGCTC
GGGGAGCTGAACAGGCTGGTGGCAATGGCCGAAGATCTAGGCTACATGGT
GATGACTCAGGCTCAGATTTCTTCTTTTTCGGCGTTGAGCACGCTATGTG
GAGGGAGTAAAGCAAGCCTGGAGCAGATTAGAAAGCTTGTTGAAGCACTG
GGCATCAATCGCTCTTCTCCCGGCACGGGGCTTAGCGAGACGGGCACGCT
CGGGGAGCTGAACAGGCTGGTGGCAATGGCCGAAGATCTAGGCTACATGG
TGTCGAGGCACGTGATGAATGAAGACTCGAGGCACGTGATGAATGAAGAC back to top
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