mRNA_E-siliculosus-1a_F_contig10765.536.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10765.536.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI) HSP 1 Score: 130 bits (326), Expect = 2.180e-33 Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = 3 Query: 6 MTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTLGELNRLVAMAEDLGYMVSRHVMNED 230 MTQAQISSFSALSTLCGG SLEQ+R+LVEALGINRSSPGTGLSETGTLGE+NRLVAMAEDLG MVSRHVMNED Sbjct: 621 MTQAQISSFSALSTLCGGRHKSLEQVRQLVEALGINRSSPGTGLSETGTLGEVNRLVAMAEDLGGMVSRHVMNED 695
BLAST of mRNA_E-siliculosus-1a_F_contig10765.536.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI) HSP 1 Score: 129 bits (324), Expect = 4.040e-33 Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 3 Query: 3 HMTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTLGELNRLVAMAEDLGYMVSRHVMNED 230 HMTQAQISSFSALSTLCGGS LEQ+R+LVEAL INR SPGTGLSETGTLGELNRLVAMAEDLG MVSRHVMNED Sbjct: 408 HMTQAQISSFSALSTLCGGSHKRLEQVRQLVEALDINRFSPGTGLSETGTLGELNRLVAMAEDLGDMVSRHVMNED 483
BLAST of mRNA_E-siliculosus-1a_F_contig10765.536.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI) HSP 1 Score: 127 bits (319), Expect = 1.910e-32 Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 3 Query: 3 HMTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTLGELNRLVAMAEDLGYMVSRHVMNED 230 H+TQAQISSFS+LSTLCGGS+ASLEQ+ +LVEALGINRSSPGTGL+ TGTLGELNRLVAMAEDLG MVSRHV NED Sbjct: 435 HITQAQISSFSSLSTLCGGSQASLEQVGQLVEALGINRSSPGTGLNGTGTLGELNRLVAMAEDLGDMVSRHVTNED 510
BLAST of mRNA_E-siliculosus-1a_F_contig10765.536.1 vs. uniprot
Match: A0A6H5K9X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X6_9PHAE) HSP 1 Score: 110 bits (274), Expect = 5.370e-30 Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 3 Query: 6 MTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTLGELNRLVAMAEDLGYMV 206 MTQAQ+SSFSALSTLCGGS++SLEQ+R+LVEALGINRSSPGTGL ET TLGELNRLVAMAEDL +V Sbjct: 1 MTQAQVSSFSALSTLCGGSRSSLEQVRQLVEALGINRSSPGTGLGETATLGELNRLVAMAEDLDDIV 67 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10765.536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10765.536.1 >prot_E-siliculosus-1a_F_contig10765.536.1 ID=prot_E-siliculosus-1a_F_contig10765.536.1|Name=mRNA_E-siliculosus-1a_F_contig10765.536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=75bp MTQAQISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPGTGLSETGTLback to top mRNA from alignment at E-siliculosus-1a_F_contig10765:257..739+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10765.536.1 ID=mRNA_E-siliculosus-1a_F_contig10765.536.1|Name=mRNA_E-siliculosus-1a_F_contig10765.536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=483bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10765:257..739+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10765:257..739+ >mRNA_E-siliculosus-1a_F_contig10765.536.1 ID=mRNA_E-siliculosus-1a_F_contig10765.536.1|Name=mRNA_E-siliculosus-1a_F_contig10765.536.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10765:257..739+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |