prot_E-siliculosus-1a_F_contig1074.524.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1074.524.1
Unique Nameprot_E-siliculosus-1a_F_contig1074.524.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length75
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1074.524.1 vs. uniprot
Match: D7G0R2_ECTSI (Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R2_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.850e-12
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 0 
Query:    1 MTGRGSSGRVRRKPQTVYDTAPLASEEQLSQQSEDEGRTRTASGGRRPNKKQKTAAGT 58
            MTGRGSS RVRRKPQTVYDTAPLASEEQLSQQ+++      A+GG  P ++QKTAAGT
Sbjct:    1 MTGRGSSSRVRRKPQTVYDTAPLASEEQLSQQTKEGTGLLAAAGG--PAREQKTAAGT 56
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1074.524.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0R2_ECTSI1.850e-1272.41Sister chromatid cohesion complex Cohesin, subunit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1074contigE-siliculosus-1a_F_contig1074:24495..25404 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1074.524.1mRNA_E-siliculosus-1a_F_contig1074.524.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1074 23076..25404 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1074.524.1 ID=prot_E-siliculosus-1a_F_contig1074.524.1|Name=mRNA_E-siliculosus-1a_F_contig1074.524.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=75bp
MTGRGSSGRVRRKPQTVYDTAPLASEEQLSQQSEDEGRTRTASGGRRPNK
KQKTAAGTHRAKTTAAAKGRGRGGA
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