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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1074.524.1 vs. uniprot
Match: D7G0R2_ECTSI (Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R2_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 1.780e-11 Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 3 Query: 162 MTGRGSSGRVRRKPQTVYDTAPLASEEQLSQQSEDEGRTRTASGGRRPNKKQKTAAGT 335
MTGRGSS RVRRKPQTVYDTAPLASEEQLSQQ+++ A+GG P ++QKTAAGT
Sbjct: 1 MTGRGSSSRVRRKPQTVYDTAPLASEEQLSQQTKEGTGLLAAAGG--PAREQKTAAGT 56
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 225 |
| Model size | 388 |
| Exons | 3 |
| Hectar predicted targeting category | other localisation |
| Seed ortholog score | 73.9 |
| Taxonomic scope | Eukaryota |
| BRITE | ko00000,ko00001,ko03036 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | D |
| EggNOG OGs | COG5537@1,KOG2011@2759 |
| EggNOG free text desc. | chromosome segregation |
| GOs | GO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007129,GO:0007135,GO:0008150,GO:0008278,GO:0008608,GO:0009987,GO:0010789,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030892,GO:0030893,GO:0030999,GO:0031619,GO:0031974,GO:0031981,GO:0032991,GO:0034990,GO:0034991,GO:0043060,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045144,GO:0048285,GO:0050000,GO:0051177,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0061982,GO:0061983,GO:0070013,GO:0070192,GO:0071840,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047 |
| KEGG Pathway | ko04110,ko04111,ko04113,map04110,map04111,map04113 |
| KEGG ko | ko:K06671 |
| Preferred name | IRR1 |
| Seed eggNOG ortholog | 2880.D7G0R2 |
| Seed ortholog evalue | 3.5e-11 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927574.8721998-UTR-E-siliculosus-1a_F_contig1074:23075..23102 | 1622927574.8721998-UTR-E-siliculosus-1a_F_contig1074:23075..23102 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1074 23076..23102 + |
| 1696318593.3946557-UTR-E-siliculosus-1a_F_contig1074:23075..23102 | 1696318593.3946557-UTR-E-siliculosus-1a_F_contig1074:23075..23102 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1074 23076..23102 + |
| 1622927574.8869498-UTR-E-siliculosus-1a_F_contig1074:24360..24494 | 1622927574.8869498-UTR-E-siliculosus-1a_F_contig1074:24360..24494 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1074 24361..24494 + |
| 1696318593.4040997-UTR-E-siliculosus-1a_F_contig1074:24360..24494 | 1696318593.4040997-UTR-E-siliculosus-1a_F_contig1074:24360..24494 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1074 24361..24494 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1074.524.1 >prot_E-siliculosus-1a_F_contig1074.524.1 ID=prot_E-siliculosus-1a_F_contig1074.524.1|Name=mRNA_E-siliculosus-1a_F_contig1074.524.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=75bp
MTGRGSSGRVRRKPQTVYDTAPLASEEQLSQQSEDEGRTRTASGGRRPNK
KQKTAAGTHRAKTTAAAKGRGRGGA back to topmRNA from alignment at E-siliculosus-1a_F_contig1074:23076..25404+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1074.524.1 ID=mRNA_E-siliculosus-1a_F_contig1074.524.1|Name=mRNA_E-siliculosus-1a_F_contig1074.524.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2329bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1074:23076..25404+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACAGCAACGAGGAGCTGGTGCATCAGGTAAGAAGAGGGAGAGCCAGCCA
TTCCCTATATGTCTTGTTGCTTGGCCATCAGGTGTCGGCGGTGCTTGATT
GCCCTCTCCTTTTCCCCGCACTGAGAAACATGGACTCCATTTTCAAAATT
TTGCCCAGAGAGAGCGAGTTGTACATAGCAACGCCACACGGCGGTTGCAT
TGATTGGGGTTGGAGTATGGCGTCCAACCGCCCAACCTGTTCTTTCTCGA
TCGGTGTCTTCCCTTGTTCTGAACGTTATTACCCTCGTCTTTTTGCAAAG
CGAAAGGAAATGTGAAAATCATACATACCTGATGGAGTACAGCGGTCAGT
AGATAGATACACATCTAAACATGGTTCAGATTTCAAATCTCATGGGTGGA
TTCAAATTACGGCACATGAGAGAGACCAGGTATTGTAAGGCATCTGAACG
AATTCGTTGCTCGTGCACCCACCGTCCGCAGCAGTCTCAAAGTTGTAGTC
TATCGTACGTATCGACACGCCTATTATAGCCTCGAAGTACCGACACTTCT
GGCCAAAGCTTCCGGGCATGTCGTTGTTTGCAACACAATCTCACAGCTTT
GTTTGGTGGCCCATTATTGATCGATCGATCCCCCCGCCGGCGGTTGACTG
CTGCTGTGGGTCTTTTTTAGAAGGAAGGAAATATAATCTCACAGAGAGAC
TATGCTGCCCGTTCGAGATAATAATAATAATAATACCCACAGCAGTCTAA
AGGGAGGTGTTGACTACAGTATGCTGTCGACTGGTGTTGACGCAGTGTTG
CACTCGCACACCCCTTTGACTTCGACTGTAAAAGCGCGCGCCATCGAAAC
ACGCATGAAGAGAGAGAGGGAGAGAGAGGAATGACGTCCCTTGCGCTCCA
AAAGGCACAGGCTCTACACGGCGGCTCGTAGTTGAACTACACAGCAGTAC
ATGCAACCCGTGCCGATCAAGATGTGCTGAATAGCCTTACAGCAGTACAT
GGTGCATGGTAGACTTCTTCGAGTACAAAACCACGTCTGCCGTGAATTCG
ATACCTTGATGGTGTCTCCCAGACACACAGCATTTGCTCGAGAATGTGCT
CCCAGGCTCACCTCCAAGTCAAGTGGCCCTGACTGGCCACGGGGGTATTA
CAGCCAAGTGCACTAGAGGAGGGGTAACAAGGGCGGAGACGTTGTAGAGC
GACGCGCACTCGACAACAAACAGACTCCCCATGCACCAGGCTAACCGCCG
CCGCCCCTTTAAACCTTGTAACGGCCCGTTCATAGGCCCGTTACAAGGCG
GCAGCACCAGAGAGGGAACGATCGCAGTCGGCACAACGAGGGAGGAAGAG
CAGAGAGACGAGTGAAGCGCACGAGATACACAAGAAGCAGGCTTGTATCT
ACCGTCCGAGGGAGAGAGGATGACCGGTAGGGGTAGCAGCGGTCGGGTGC
GGAGGAAGCCCCAGACGGTTTACGACACCGCCCCCCTAGCGTCCGAGGAG
CAGCTGTCTCAGCAGGTGAGCTCTCAGTCGGCAGACAGCACGCGGAGGTC
TTGATAACGTTGTTGTTGATCGGCGTGTCGTGTTTTGTTTATACCAGTGC
ACCAGCACCAGAGAAATAGCCCAAACCAGCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCGGGCCGCCCGGGGGGGAGGGGGGGGCGGG
GGGGGGGAGAAAAAAGAGAAGAACCTGCGGACGGGGCGGGGACAAGTCGC
ACCATGACCAGTTTGCGGGCGTATCGGGATAAGGTGGTGGCGTGTTAGTG
AAATAAAACCTTGAGATCTCATGGGCTACGTGATGTCTTCACCTGCCGTT
TGTGCGCACGTGTGGGTACGTGCTCTCCTTCGCCGGGGCCCCCCGTCGCC
TTGGAGGCATCAGATCAGGGCACGCCGAACAAAAATATCATCTGCGTTTT
TTCTTGGGGTTAGGGTTAGGTGGATGATCAGAAAAGACGTGATGATGCCT
AGCAAAATGTAGCGGACGACAAAAATAGACAGACAGGCTCAAGAGGCATC
GAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAAGAGAGAGAGGATGA
TGTGGCGGCAGGCAGATGATACGCCTGCCTGCTGCTGTTGGCGCCAACAT
ATTGTCGTTATTCCTTACCTCGTATTTCGTTTCTCCCCGTTCCGACATAG
AGCGAAGACGAAGGAAGGACCAGGACTGCTAGCGGCGGCCGGCGGCCCAA
CAAGAAGCAGAAGACGGCCGCTGGCACGCACAGGGCAAAGACGACGGCGG
CGGCAAAGGGGAGGGGGCGGGGCGGAGCG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1074:23076..25404+ >mRNA_E-siliculosus-1a_F_contig1074.524.1 ID=mRNA_E-siliculosus-1a_F_contig1074.524.1|Name=mRNA_E-siliculosus-1a_F_contig1074.524.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1074:23076..25404+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCGGTAGGGGTAGCAGCGGTCGGGTGCGGAGGAAGCCCCAGACGGT
TTACGACACCGCCCCCCTAGCGTCCGAGGAGCAGCTGTCTCAGCAGATGA
CCGGTAGGGGTAGCAGCGGTCGGGTGCGGAGGAAGCCCCAGACGGTTTAC
GACACCGCCCCCCTAGCGTCCGAGGAGCAGCTGTCTCAGCAGAGCGAAGA
CGAAGGAAGGACCAGGACTGCTAGCGGCGGCCGGCGGCCCAACAAGAAGC
AGAAGACGGCCGCTGGCACGCACAGGGCAAAGACGACGGCGGCGGCAAAG
GGGAGGGGGCGGGGCGGAGCGAGCGAAGACGAAGGAAGGACCAGGACTGC
TAGCGGCGGCCGGCGGCCCAACAAGAAGCAGAAGACGGCCGCTGGCACGC
ACAGGGCAAAGACGACGGCGGCGGCAAAGGGGAGGGGGCGGGGCGGAGCG back to top
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