Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 420 |
| Model size | 438 |
| Exons | 1 |
| Ec32 ortholog | Ec-28_002740.1 |
| Ec32 ortholog description | Hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927574.8194292-CDS-E-siliculosus-1a_F_contig1073:31791..32211 | 1622927574.8194292-CDS-E-siliculosus-1a_F_contig1073:31791..32211 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1073 31792..32211 - |
| 1696318593.3799982-CDS-E-siliculosus-1a_F_contig1073:31791..32211 | 1696318593.3799982-CDS-E-siliculosus-1a_F_contig1073:31791..32211 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1073 31792..32211 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927574.8316476-UTR-E-siliculosus-1a_F_contig1073:32211..32229 | 1622927574.8316476-UTR-E-siliculosus-1a_F_contig1073:32211..32229 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1073 32212..32229 - |
| 1696318593.3869765-UTR-E-siliculosus-1a_F_contig1073:32211..32229 | 1696318593.3869765-UTR-E-siliculosus-1a_F_contig1073:32211..32229 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1073 32212..32229 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1073.522.1 >prot_E-siliculosus-1a_F_contig1073.522.1 ID=prot_E-siliculosus-1a_F_contig1073.522.1|Name=mRNA_E-siliculosus-1a_F_contig1073.522.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=140bp
MYPTSPILSTPASKKPLCAATSRLRSVCRWGCLQGHFRGGVLACAGEEGV
SSPKHDALGVMQRAPPPQIPPADMSGDCKTSSRLGDASTIGLRQPRDAGA
YTPLERFAFGPLDIALLLVRGLEDKPGMEELHMLMPAGS* back to topmRNA from alignment at E-siliculosus-1a_F_contig1073:31792..32229- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1073.522.1 ID=mRNA_E-siliculosus-1a_F_contig1073.522.1|Name=mRNA_E-siliculosus-1a_F_contig1073.522.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1073:31792..32229- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTAGAGGCCGACGAGACGATGTACCCGACCTCTCCCATTCTTTCGACGCC
AGCTTCGAAGAAGCCGCTTTGCGCCGCCACCTCTCGGCTGCGTTCTGTCT
GTCGGTGGGGGTGTTTGCAGGGCCATTTTCGCGGCGGCGTACTCGCTTGC
GCTGGCGAAGAAGGCGTTTCGAGTCCAAAGCACGACGCGCTCGGTGTCAT
GCAACGCGCCCCGCCACCGCAGATTCCCCCCGCAGACATGTCTGGTGACT
GTAAGACTTCCTCGCGTCTTGGAGACGCCAGCACGATAGGCTTGCGGCAG
CCCCGCGACGCTGGTGCGTACACACCTCTCGAGCGGTTCGCGTTCGGACC
ACTAGACATCGCCCTGCTGCTCGTGAGAGGCCTCGAGGACAAGCCTGGTA
TGGAGGAGCTCCATATGCTCATGCCGGCGGGTTCTTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1073:31792..32229- >mRNA_E-siliculosus-1a_F_contig1073.522.1 ID=mRNA_E-siliculosus-1a_F_contig1073.522.1|Name=mRNA_E-siliculosus-1a_F_contig1073.522.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1073:31792..32229- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTACCCGACCTCTCCCATTCTTTCGACGCCAGCTTCGAAGAAGCCGCT
TTGCGCCGCCACCTCTCGGCTGCGTTCTGTCTGTCGGTGGGGGTGTTTGC
AGGGCCATTTTCGCGGCGGCGTACTCGCTTGCGCTGGCGAAGAAGGCGTT
TCGAGTCCAAAGCACGACGCGCTCGGTGTCATGCAACGCGCCCCGCCACC
GCAGATTCCCCCCGCAGACATGTCTGGTGACTGTAAGACTTCCTCGCGTC
TTGGAGACGCCAGCACGATAGGCTTGCGGCAGCCCCGCGACGCTGGTGCG
TACACACCTCTCGAGCGGTTCGCGTTCGGACCACTAGACATCGCCCTGCT
GCTCGTGAGAGGCCTCGAGGACAAGCCTGGTATGGAGGAGCTCCATATGC
TCATGCCGGCGGGTTCTTGAATGTACCCGACCTCTCCCATTCTTTCGACG
CCAGCTTCGAAGAAGCCGCTTTGCGCCGCCACCTCTCGGCTGCGTTCTGT
CTGTCGGTGGGGGTGTTTGCAGGGCCATTTTCGCGGCGGCGTACTCGCTT
GCGCTGGCGAAGAAGGCGTTTCGAGTCCAAAGCACGACGCGCTCGGTGTC
ATGCAACGCGCCCCGCCACCGCAGATTCCCCCCGCAGACATGTCTGGTGA
CTGTAAGACTTCCTCGCGTCTTGGAGACGCCAGCACGATAGGCTTGCGGC
AGCCCCGCGACGCTGGTGCGTACACACCTCTCGAGCGGTTCGCGTTCGGA
CCACTAGACATCGCCCTGCTGCTCGTGAGAGGCCTCGAGGACAAGCCTGG
TATGGAGGAGCTCCATATGCTCATGCCGGCGGGTTCTTGA back to top
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