mRNA_E-siliculosus-1a_F_contig1073.519.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1073.519.1
Unique NamemRNA_E-siliculosus-1a_F_contig1073.519.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1073.519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1073contigE-siliculosus-1a_F_contig1073:6754..8304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size243
Model size347
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1073.519.1prot_E-siliculosus-1a_F_contig1073.519.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1073 6857..8304 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.3211932-UTR-E-siliculosus-1a_F_contig1073:6753..68561622927574.3211932-UTR-E-siliculosus-1a_F_contig1073:6753..6856Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1073 6754..6856 -
1696318593.0935729-UTR-E-siliculosus-1a_F_contig1073:6753..68561696318593.0935729-UTR-E-siliculosus-1a_F_contig1073:6753..6856Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1073 6754..6856 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927574.337693-CDS-E-siliculosus-1a_F_contig1073:6856..69651622927574.337693-CDS-E-siliculosus-1a_F_contig1073:6856..6965Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1073 6857..6965 -
1696318593.1024656-CDS-E-siliculosus-1a_F_contig1073:6856..69651696318593.1024656-CDS-E-siliculosus-1a_F_contig1073:6856..6965Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1073 6857..6965 -
1622927574.3560164-CDS-E-siliculosus-1a_F_contig1073:7680..77721622927574.3560164-CDS-E-siliculosus-1a_F_contig1073:7680..7772Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1073 7681..7772 -
1696318593.1112688-CDS-E-siliculosus-1a_F_contig1073:7680..77721696318593.1112688-CDS-E-siliculosus-1a_F_contig1073:7680..7772Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1073 7681..7772 -
1622927574.3714123-CDS-E-siliculosus-1a_F_contig1073:8262..83041622927574.3714123-CDS-E-siliculosus-1a_F_contig1073:8262..8304Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1073 8263..8304 -
1696318593.1207802-CDS-E-siliculosus-1a_F_contig1073:8262..83041696318593.1207802-CDS-E-siliculosus-1a_F_contig1073:8262..8304Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1073 8263..8304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1073.519.1

>prot_E-siliculosus-1a_F_contig1073.519.1 ID=prot_E-siliculosus-1a_F_contig1073.519.1|Name=mRNA_E-siliculosus-1a_F_contig1073.519.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=81bp
TDTSQPVERASQPQDVVPPATQVRGDFSSLLRRIQHKLPLASSTSGIYQQ
PRGKRELCPRRRTLLVVALLVHLVTSRAQR*
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mRNA from alignment at E-siliculosus-1a_F_contig1073:6754..8304-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1073.519.1 ID=mRNA_E-siliculosus-1a_F_contig1073.519.1|Name=mRNA_E-siliculosus-1a_F_contig1073.519.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1551bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1073:6754..8304- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAGACACGTCTCAACCAGTGGAGAGAGCTAGCCAACCACAGGTGAGTGG
GAGGAATGGTGTTGCATCGAATCAATTCTGAGACTTGCACGATGAAGCCT
CGGGTTAAGCGACTCTCACCGGGTTGTCGGAGGTCGCTTGTCGGATCTCG
GCGCCACATTCACGCTTAGCACCGCGGTACAGCAGTAGACCTTCCTTCTA
ACCCCGCCCCATGTGTGTTCGTGTGGGTAGAGGGAGATGGGGTGGTTTGG
TAGCAACGACTGTGAGCGAGACACACATGAAGCAAGCACCCCGTGGCTAG
CCGAGCGTCCTAGCTCTTGTGGCCAAGATCAGTAGAATGTTGTGTTGGAG
CGTTTCGGCCTACTGCTGCAGCAGAGGTTGCGTTGTTGTCCAGCTGGCTG
CACTTGACCATGGGACCATTGCTCTTTTCCCCGCCGATGGCTGCACACTA
TAAACGTAGTCACAGGGCCTGCTGCTGTCCCACTAGCTTTCTCACCGTCC
CCACGCATTTTCCACCTGCCACACAAGTTCAGGACGTTGTTCCACCTGCC
ACACAAGTGCGGGGGGATTTTTCATCTCTTCTCCGACGTATTCAGCACAA
GCTACCTCTTGCTAGCAGCACAAGGTACTTGTAACTGCTGTTCTTTTGGG
TTCCAGCAGTAGGAGGAGAGCTCCAAACCCGACGGAGACACACACACAAC
CTCGCGCACGAACAACAGTGTTGGCAGTGACACCACACAAACCTGCTTGG
TGTGAGGAGCTATTTGTGCAGCATCGTTTTTGTGTGCCTAACAAGGATTC
CGCACCTATTCAGCCGCGGAGAATTGCCAGCATAGTTTTATGTACATCAA
TGTAGACAAATGGCCGTCTCAATCTCCGAAACAGAATCGGGTTAGGGTGC
GAGTGTGTTGATGGCGGTGACATATGTCCTATGACGCCGTCGCCGTAGAT
GGCGGTTCCCAGCCCCCCTCGGCTCCCTGGGTACACAGGCGCACAGCAGT
GGTGACACCTAGCCGAAAGTCATGCGCCTCCGCACGAGCATCGGCCGGGG
CGAGATAATTCCACCTTCAATCGATTCAGTACGAAACGAGTCACCAAAGA
AACGGGCGGGGAAGAGGAAAGTGCAGTCGAACACCGCCATTCTCCCGCAA
GGACCGTAAACCTGTGAGAACGTCGGCAAACACGCAGACCATAGGCATAC
ACCATATTAAAACCTTTCGTTTTCGTTGCACCCACTCCCTGACTACCACA
GCACCAGATGTTGTTCGCCTTTTGACGCGTAGAAGCTGACGCTACAAGTT
CCTCCCCTTCTCCCTCCGCGCACGGCGTACAACCCAAAGCGGAATCTACC
AACAGCCCAGGGGAAAAAGGGAGCTCTGTCCTCGCCGGCGGACTTTGCTG
GTGGTGGCGCTGCTTGTGCACCTTGTTACAAGTCGTGCACAGCGTTGAGC
TTGGCACGCCTGGGCCGTGTGTGTGTGTGTGTGTGTTTCAGCCCTGACTA
CTAGAGGGGGGCTCGCGCGCATAGAGGGGGGAGGGCAAGAGTCATCACGG
G
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1073:6754..8304-

>mRNA_E-siliculosus-1a_F_contig1073.519.1 ID=mRNA_E-siliculosus-1a_F_contig1073.519.1|Name=mRNA_E-siliculosus-1a_F_contig1073.519.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1073:6754..8304- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAGACACGTCTCAACCAGTGGAGAGAGCTAGCCAACCACAGACAGACAC
GTCTCAACCAGTGGAGAGAGCTAGCCAACCACAGGACGTTGTTCCACCTG
CCACACAAGTGCGGGGGGATTTTTCATCTCTTCTCCGACGTATTCAGCAC
AAGCTACCTCTTGCTAGCAGCACAAGGACGTTGTTCCACCTGCCACACAA
GTGCGGGGGGATTTTTCATCTCTTCTCCGACGTATTCAGCACAAGCTACC
TCTTGCTAGCAGCACAAGCGGAATCTACCAACAGCCCAGGGGAAAAAGGG
AGCTCTGTCCTCGCCGGCGGACTTTGCTGGTGGTGGCGCTGCTTGTGCAC
CTTGTTACAAGTCGTGCACAGCGTTGACGGAATCTACCAACAGCCCAGGG
GAAAAAGGGAGCTCTGTCCTCGCCGGCGGACTTTGCTGGTGGTGGCGCTG
CTTGTGCACCTTGTTACAAGTCGTGCACAGCGTTGA
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