mRNA_E-siliculosus-1a_F_contig10718.513.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10718.513.1 vs. uniprot
Match: D8LS72_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS72_ECTSI) HSP 1 Score: 294 bits (752), Expect = 3.200e-91 Identity = 156/160 (97.50%), Postives = 156/160 (97.50%), Query Frame = 1 Query: 1 GGWCSATRDDDDGPHDXXXXXXXXXXXXXX--APGYFGGLVSSLGVWLGFKSVALEDCLDAFFSPERLRGANQYHCDGCGCKKEADKSTSLLHAPEILMLHVKRFRRGYLWSHKVHNRVVFPLHDLDVSRWLSDHALESSVNQQRASGTSGGDAHRKSSV 474
GGWCSATRDDDDGPHD XXXXXXXXXXXX APGYFGGLVSSLGVWLGFKSVALEDCLDAFFSPERLRGANQYHCDGCGCKKEADKSTSLLHAPEILMLHVKRFRRGYLWSHKVHNRVVFPLHDLDVSRWLSDHALESSVNQQRASGTSGGDAHRKSSV
Sbjct: 445 GGWCSATRDDDDGPHDREXXXXXXXXXXXXXXAPGYFGGLVSSLGVWLGFKSVALEDCLDAFFSPERLRGANQYHCDGCGCKKEADKSTSLLHAPEILMLHVKRFRRGYLWSHKVHNRVVFPLHDLDVSRWLSDHALESSVNQQRASGTSGGDAHRKSSV 604
BLAST of mRNA_E-siliculosus-1a_F_contig10718.513.1 vs. uniprot
Match: A0A6H5JK59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK59_9PHAE) HSP 1 Score: 288 bits (736), Expect = 9.640e-88 Identity = 147/160 (91.88%), Postives = 147/160 (91.88%), Query Frame = 1 Query: 1 GGWCSATRDDDDGPHDXXXXXXXXXXXXXXAPGYFGGLVSSLGVWLGFKSVALEDCLDAFFSPERLRGANQYHCDGCGCKKEAD--KSTSLLHAPEILMLHVKRFRRGYLWSHKVHNRVVFPLHDLDVSRWLSDHALESSVNQQRASGTSGGDAHRKSSV 474
GGWCSATRDDDDGPHD XXXXXXAPGYFGGLVSSLGVWLGFKSVALEDCLDAFFSPERLRGANQYHCDGCGCKKEA KSTSLLHAPEILMLHVKRFRRGY WSHKVHNRVVFPLHDLDVSRWLSDHALESSVNQQRA GTSGGDAHRKSSV
Sbjct: 443 GGWCSATRDDDDGPHDRDHEGRASXXXXXXAPGYFGGLVSSLGVWLGFKSVALEDCLDAFFSPERLRGANQYHCDGCGCKKEAGEYKSTSLLHAPEILMLHVKRFRRGYFWSHKVHNRVVFPLHDLDVSRWLSDHALESSVNQQRAPGTSGGDAHRKSSV 602
BLAST of mRNA_E-siliculosus-1a_F_contig10718.513.1 vs. uniprot
Match: UPI000F67000D (ubiquitin carboxyl-terminal hydrolase 20-like n=1 Tax=Penaeus vannamei TaxID=6689 RepID=UPI000F67000D) HSP 1 Score: 87.8 bits (216), Expect = 3.180e-17 Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1 Query: 133 WLGFKSVALEDCLDAFFSPERLRGANQYHCDGCGCKKEADKSTSLLHAPEILMLHVKRFRRGYLWSHKVHNRVVFPLHDLDVSRWL 390
WL +V+L CL AFFS + L+G N Y C+ CG + K + ++H PE+L++H+KRFR Y++S K+ V FPLH LD++ +L
Sbjct: 242 WLWGPAVSLHHCLAAFFSADELKGDNMYSCEKCGKLRNGVKYSKVVHLPEVLIIHLKRFRHEYMFSSKISQYVSFPLHGLDLTPFL 327
BLAST of mRNA_E-siliculosus-1a_F_contig10718.513.1 vs. uniprot
Match: UPI001C70FF2F (ubiquitin carboxyl-terminal hydrolase 20-like isoform X1 n=15 Tax=Penaeus TaxID=133894 RepID=UPI001C70FF2F) HSP 1 Score: 87.8 bits (216), Expect = 3.350e-17 Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1 Query: 133 WLGFKSVALEDCLDAFFSPERLRGANQYHCDGCGCKKEADKSTSLLHAPEILMLHVKRFRRGYLWSHKVHNRVVFPLHDLDVSRWL 390
WL +V+L CL AFFS + L+G N Y C+ CG + K + ++H PE+L++H+KRFR Y++S K+ V FPLH LD++ +L
Sbjct: 531 WLWGPAVSLHHCLAAFFSADELKGDNMYSCEKCGKLRNGVKYSKVVHLPEVLIIHLKRFRHEYMFSSKISQYVSFPLHGLDLTPFL 616
BLAST of mRNA_E-siliculosus-1a_F_contig10718.513.1 vs. uniprot
Match: A0A7R9DS79_TIMPO (Hypothetical protein n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9DS79_TIMPO) HSP 1 Score: 81.6 bits (200), Expect = 4.130e-17 Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 1 Query: 133 WLGFKSVALEDCLDAFFSPERLRGANQYHCDGCGCKKEADKSTSLLHAPEILMLHVKRFRRGYLWSHKVHNRVVFPLHDLDVSRWL 390
W +V+L DCL AFFS + L+G N Y C+ C + K + +L PE+L +H+KRFR ++S K++N V FPL +LD+ +L
Sbjct: 29 WFWGPTVSLHDCLAAFFSADELKGDNMYSCEKCNKLRNGVKYSKVLELPEVLCIHLKRFRHELMFSSKINNYVSFPLEELDMRPYL 114
BLAST of mRNA_E-siliculosus-1a_F_contig10718.513.1 vs. uniprot
Match: A0A1I8AR30_9BILA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8AR30_9BILA) HSP 1 Score: 86.3 bits (212), Expect = 1.130e-16 Identity = 37/90 (41.11%), Postives = 58/90 (64.44%), Query Frame = 1 Query: 148 SVALEDCLDAFFSPERLRGANQYHCDGCGCKKEADKSTSLLHAPEILMLHVKRFRRGYLWSHKVHNRVVFPLHDLDVSRWLSDHALESSV 417
+++L+DCL AFFSP+ L+G + Y C+ C + K+ + PEIL +H+KRFR Y++S KV V FP+ D+D+S +L D+ S +
Sbjct: 441 AISLDDCLKAFFSPDHLKGEDMYSCEKCAKLRNGVKTCRITKLPEILCIHLKRFRHDYMYSTKVSTSVTFPICDMDLSEFLCDNVQPSDM 530
BLAST of mRNA_E-siliculosus-1a_F_contig10718.513.1 vs. uniprot
Match: A0A267GT82_9PLAT (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GT82_9PLAT) HSP 1 Score: 84.7 bits (208), Expect = 3.880e-16 Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 1 Query: 151 VALEDCLDAFFSPERLRGANQYHCDGCGCKKEADKSTSLLHAPEILMLHVKRFRRGYLWSHKVHNRVVFPLHDLDVSRWL 390
V+L+DCLDAFFS + L+G N YHC CG + K + + PE+L +H+KRFR + +S K+H+ V FP+ +LD+ +L
Sbjct: 452 VSLQDCLDAFFSNDDLKGDNMYHCAKCGKLRNGIKYSRISRLPEMLTVHLKRFRHDFAYSSKIHSHVAFPVDELDMKPYL 531
BLAST of mRNA_E-siliculosus-1a_F_contig10718.513.1 vs. uniprot
Match: A0A293LI95_ORNER (Ubiquitinyl hydrolase 1 (Fragment) n=2 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LI95_ORNER) HSP 1 Score: 84.3 bits (207), Expect = 3.940e-16 Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 1 Query: 133 WLGFKSVALEDCLDAFFSPERLRGANQYHCDGCGCKKEADKSTSLLHAPEILMLHVKRFRRGYLWSHKVHNRVVFPLHDLDVSRWL 390
WL +++L+DCL AFFS + L+G N Y CD C + K + +L PE+L +H+KRFR ++S K+ N V FPL LD+S +L
Sbjct: 8 WLWGPTISLQDCLSAFFSADELKGDNMYSCDKCHKLRNGVKFSKVLQLPEVLCVHLKRFRHEVMFSSKISNYVSFPLEGLDMSPFL 93
BLAST of mRNA_E-siliculosus-1a_F_contig10718.513.1 vs. uniprot
Match: A0A4U5NEF0_STECR (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5NEF0_STECR) HSP 1 Score: 84.3 bits (207), Expect = 5.180e-16 Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 145 KSVALEDCLDAFFSPERLRGANQYHCDGCGCKKEADKSTSLLHAPEILMLHVKRFRRGYLWSHKVHNRVVFPLHDLDVSRWLSDH 399
+++L+DCL +FFSP+ LRG + Y C+ C + K+ + PEIL +H+KRFR Y++S KV V FP+ DLD+S +L ++
Sbjct: 308 SAISLDDCLKSFFSPDHLRGDDMYSCEKCAKLRNGVKTCRITKLPEILCIHLKRFRHDYVYSTKVSTSVTFPICDLDLSEFLCEN 392
BLAST of mRNA_E-siliculosus-1a_F_contig10718.513.1 vs. uniprot
Match: A0A5N5SYD6_9CRUS (Ubiquitinyl hydrolase 1 n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5SYD6_9CRUS) HSP 1 Score: 84.3 bits (207), Expect = 5.230e-16 Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 1 Query: 133 WLGFKSVALEDCLDAFFSPERLRGANQYHCDGCGCKKEADKSTSLLHAPEILMLHVKRFRRGYLWSHKVHNRVVFPLHDLDVSRWL 390
WL SV+L +CL AFFS + L+G N Y C+ CG + K + ++ PEIL++H+KRFR Y++S K+ V FP+ LD+S +L
Sbjct: 299 WLWGPSVSLFNCLAAFFSADELKGDNMYSCEKCGKLRNGVKYSKVIELPEILIIHLKRFRHEYMYSSKISQYVAFPVQGLDLSPFL 384 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10718.513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10718.513.1 >prot_E-siliculosus-1a_F_contig10718.513.1 ID=prot_E-siliculosus-1a_F_contig10718.513.1|Name=mRNA_E-siliculosus-1a_F_contig10718.513.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=158bp GGWCSATRDDDDGPHDRDHEGRGSGGGGGGAPGYFGGLVSSLGVWLGFKSback to top mRNA from alignment at E-siliculosus-1a_F_contig10718:344..2276- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10718.513.1 ID=mRNA_E-siliculosus-1a_F_contig10718.513.1|Name=mRNA_E-siliculosus-1a_F_contig10718.513.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1933bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10718:344..2276- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10718:344..2276- >mRNA_E-siliculosus-1a_F_contig10718.513.1 ID=mRNA_E-siliculosus-1a_F_contig10718.513.1|Name=mRNA_E-siliculosus-1a_F_contig10718.513.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=948bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10718:344..2276- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |