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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1071.508.1 vs. uniprot
Match: D8LNC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC0_ECTSI) HSP 1 Score: 144 bits (363), Expect = 1.500e-35 Identity = 75/122 (61.48%), Postives = 93/122 (76.23%), Query Frame = 2
Query: 398 MVISSVSVVIISVPVLCFSAKAIRNACRAGGILSRIIIYLRRQAPSLPTTRAPRDAMEVLEEGLVSPPPSVLQLSFRSLSPKLRRAEERMFRAVRSMYAMLDQTLCGAPSSSSKAPMERMND 763
MV++SVS V++SVPVL FS KA R+AC+ GGI+SRI+ LRR AP L R PR+ ME++EEG+ PP V+QL+F+ LSP+LRR E RM R V+SMY MLDQTL G SSSSK PM+ MND
Sbjct: 1 MVVASVSAVVVSVPVLYFSVKAFRHACQEGGIMSRILANLRRLAPGLSAIREPRNPMEIMEEGISFPPLRVIQLTFKRLSPQLRRVELRMIRTVKSMYVMLDQTLLGPASSSSKGPMDSMND 122
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 447 |
| Model size | 1663 |
| Exons | 4 |
| Hectar predicted targeting category | signal peptide |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1071.508.1 >prot_E-siliculosus-1a_F_contig1071.508.1 ID=prot_E-siliculosus-1a_F_contig1071.508.1|Name=mRNA_E-siliculosus-1a_F_contig1071.508.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=149bp
MFSISDVSAVWALVWAWIFANLAMVISSVSVVIISVPVLCFSAKAIRNAC
RAGGILSRIIIYLRRQAPSLPTTRAPRDAMEVLEEGLVSPPPSVLQLSFR
SLSPKLRRAEERMFRAVRSMYAMLDQTLCGAPSSSSKAPMERMNDHAQ* back to topmRNA from alignment at E-siliculosus-1a_F_contig1071:650..3528- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1071.508.1 ID=mRNA_E-siliculosus-1a_F_contig1071.508.1|Name=mRNA_E-siliculosus-1a_F_contig1071.508.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2879bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1071:650..3528- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGTATCTTCCCTAACAATCCAGTTCCATTGAATCACCCCAGAAAGACAA
AACGGAATTTGGTGTGAACCCGTCCCTTCGGCAGAAGTCAGTCGGTTCAA
CTCCTCGGCCTGATATGATACCTGCTTGCAGATCACCCATTGGCCAATGG
AACTTCAACCGAAAAAGACGATTTAAAGATCCGGCGTTGTTAAGTCCGCA
ACAATCGTGATGAACGAGCAAGACCTCCCCACTATTCATTCCGACGCTAT
TTGCAGCTAGATTCTTTCAGATAGCACCTCTACCACAAGACCCTTCACCG
ACAACTACAGTAAAACCTGTGAATCACCATGTTTTCGATCAGCGATGTGT
CCGCCGTCTGGGCCTTAGTGTGGGCGTGGATCTTTGCGAACCTCGCGATG
GTTATTTCAAGCGTGTCAGTGGTCATCATTTCGGTCCCCGTCTTGTGCTT
CTCCGCCAAGGCCATCCGGAACGCCTGCCGCGCGGGCGGCATACTGAGCA
GAATCATCATCTACCTGCGCCGTCAAGCACCTTCCCTTCCTACCACGAGA
GCACCTCGAGATGCCATGGAGGTACTCGAAGAGGTGAGAAGTTTCGCTCG
GGGTATATTGAGGCGATAGCTTCGTCGGTGAAGTTCCAGAACTGAAAGTT
TGGCCGAGACAAGTTGGTCGTTGTGCGCAATCTCAAAGTGCAGAACGCGT
AGGAAACAGACTATCATTCGCTTAGACAAGCCGCGTCCTCGTCGAAGTGT
TGGCCTCTGACTCTTGCAGCATGTTGCCAAGGCCCATAGGCATTCAATTT
TTATACTCCTTGATTCCTGCCGGTGGTACAAGTAGACGAACGTTGGGTTA
GCCTACAAAGGATTTTTGAGCACGAACCTCCATTGTTCGGCAAAATACAT
CAGGCACGATTGAACCAACTACTGTAGCCTATTCAAGTACTACTGAATCT
ATTTGTGCTGCCTCGCCCTCTCCTCCTATTCCTCCTCCTGCTATGTATAA
TGATGCGTCTCTGTTGTGCATATGTGCGTCTGCCCCATGACGTCGCTCGC
TCGCTATGCTCGTTGTTGCTCTTCGCAGGGGCTTGTTTCCCCCCCCCCGA
GCGTGTTGCAGCTGAGCTTTCGAAGCCTTTCTCCGAAACTGCGTCGCGCG
GAAGAGAGGATGTTTCGAGCGGTGAGGAGCATGTACGCCATGCTCGACCA
GACTCTTTGCGGAGCTCCATCTTCTTCTTCGAAAGCTCCGATGGAAAGAA
TGAACGACCATGCTCAATAGTGGTTAGAACAGTTGCCTTAAATGTTGGCG
CGCCTCGACAGCTGTCATGTCTCTCGTGAAACCCGCCAAGGACGTGACCG
ACTTGTTCGCCGACTGCGCCAAGAGAAACGGGTGAGGGAACCTGTGGCAT
GGCCGCCATTTACCTAGTTTAGGACGATGGGTTAGTACGATGGGTCTAGC
ATTCTGTTTAGTGGAAGTAGTAAATTCGCCTTCGAGTGTGAAAACGCACG
TAGTAGATAGATACCATAGACATTTCCCTTGGTTTTGAGATATCTCTCGC
GGTCTCCTTTTTGTTGCGGTACATATTAACCCCAGCACTGTAAAATTTTG
GAGTTCCTTATGCCTTGTTCCTCCTTTGACGAATCCGGTCTCAGGTATGG
TGAGCCGGGGGCGCCAGGCCCACTTCGTGGCACTCTTGAACCAGAGAGCA
ATCGCAATGGAGGAGGTAATCGCGCACTCAATCTGGGCGGTGAGTACTTG
CACGTGATGCTAGGTAGAAAGGCTACATGAACAGTCGAAACGTGGGTCGG
TCGTGTTGTGAATTCTCTTCCCCCGATACATGTCACTCGCAGCATGATAT
CGGAGCGTGCCGTTAACCCATTCATGTTTCCCGTCGGCCTGCCAAATAAC
TGGACAATAGTGACGGCAAGGGATGTACGGGGGAGGACACTTGTCAAGAT
ATGGGGGGGGATGATAACGTGAGCCGTATGTTGGTTGTCTCAGTATTTGC
ATTGTGAGGACATGGGGTGTATGAGAACACGAGCAACCTCCGCCAAGCTC
CTAAACCTCTTAGAAATCGGCATACATACATGTTCTCTGCTGAACATAAG
TGCGTAGTAGGCAATGATGCATGATGCCAAAGCGACCAACACGAGAAGAC
CATCCCCACCCCAACACTGCTTCCTGCTTCTTCTACCCAAACCACAGAAA
ATCATGCCAGAGGTCCTCACCACGTACAGAGACGCCACCAGCACCCTCGA
GCTCCTGGAACGAGATGAGCGGACGAACGGCGCCAGGGCGAGCGGCGCAG
GCAGGGGCACCATCGGGAACAGCAAGGGTGCTACCGTGGAGTCGGGTGTG
GAGTACATCCCGTACAGCCCCCCCGCCACAAACGCGAACCCCGTGCCTCT
CAAGCGGCTGGAAACGGCATCAAATTATCTAGACGGTGATACGCAAGGGA
GAGACGGAGGCAGGCAGACAGAACTAGTTAGGCTTACAACAGTTCGTTCT
TCCAGAACTGTTGGCCGCGCTCGTCCACCGTTTGGCGACTAGTTTTGGTC
TTCTCGACGGCAAAGAATAGTCAGACCTAGGCAATCGACTTGTTCGAAGA
GGGTTTCGACACTACCCGTTTTCTACCCGGTGTGTACTTGATGCCAATTT
CAGCCGGTTTTATTTTTATGGGAGGGTAGATTGTATCGATGTGCGTTTGT
AGGTTTCCGGAATGGCGTACAGGCCCTTAACGGATTTGAAGTGCTTGTGA
TTGGGGTTGCCTGTTGCGATGACTGTCCTCTGCGTGGATCGCTTGCTTGG
GTCTGTGATGCTGTGTTCGAGACACGAATCATATTTCGGGACAACCACGT
TGATTTGATTGTAGATGGCTCTAAGGTGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1071:650..3528- >mRNA_E-siliculosus-1a_F_contig1071.508.1 ID=mRNA_E-siliculosus-1a_F_contig1071.508.1|Name=mRNA_E-siliculosus-1a_F_contig1071.508.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1071:650..3528- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTTTCGATCAGCGATGTGTCCGCCGTCTGGGCCTTAGTGTGGGCGTG
GATCTTTGCGAACCTCGCGATGGTTATTTCAAGCGTGTCAGTGGTCATCA
TTTCGGTCCCCGTCTTGTGCTTCTCCGCCAAGGCCATCCGGAACGCCTGC
CGCGCGGGCGGCATACTGAGCAGAATCATCATCTACCTGCGCCGTCAAGC
ACCTTCCCTTCCTACCACGAGAGCACCTCGAGATGCCATGGAGGTACTCG
AAGAGATGTTTTCGATCAGCGATGTGTCCGCCGTCTGGGCCTTAGTGTGG
GCGTGGATCTTTGCGAACCTCGCGATGGTTATTTCAAGCGTGTCAGTGGT
CATCATTTCGGTCCCCGTCTTGTGCTTCTCCGCCAAGGCCATCCGGAACG
CCTGCCGCGCGGGCGGCATACTGAGCAGAATCATCATCTACCTGCGCCGT
CAAGCACCTTCCCTTCCTACCACGAGAGCACCTCGAGATGCCATGGAGGT
ACTCGAAGAGGGGCTTGTTTCCCCCCCCCCGAGCGTGTTGCAGCTGAGCT
TTCGAAGCCTTTCTCCGAAACTGCGTCGCGCGGAAGAGAGGATGTTTCGA
GCGGTGAGGAGCATGTACGCCATGCTCGACCAGACTCTTTGCGGAGCTCC
ATCTTCTTCTTCGAAAGCTCCGATGGAAAGAATGAACGACCATGCTCAAT
AGGGGCTTGTTTCCCCCCCCCCGAGCGTGTTGCAGCTGAGCTTTCGAAGC
CTTTCTCCGAAACTGCGTCGCGCGGAAGAGAGGATGTTTCGAGCGGTGAG
GAGCATGTACGCCATGCTCGACCAGACTCTTTGCGGAGCTCCATCTTCTT
CTTCGAAAGCTCCGATGGAAAGAATGAACGACCATGCTCAATAG back to top
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