Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1071.508.1 vs. uniprot
Match:
D8LNC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC0_ECTSI)
HSP 1 Score: 144 bits (363), Expect = 7.700e-40
Identity = 75/122 (61.48%), Postives = 93/122 (76.23%), Query Frame = 0
Query: 24 MVISSVSVVIISVPVLCFSAKAIRNACRAGGILSRIIIYLRRQAPSLPTTRAPRDAMEVLEEGLVSPPPSVLQLSFRSLSPKLRRAEERMFRAVRSMYAMLDQTLCGAPSSSSKAPMERMND 145
MV++SVS V++SVPVL FS KA R+AC+ GGI+SRI+ LRR AP L R PR+ ME++EEG+ PP V+QL+F+ LSP+LRR E RM R V+SMY MLDQTL G SSSSK PM+ MND
Sbjct: 1 MVVASVSAVVVSVPVLYFSVKAFRHACQEGGIMSRILANLRRLAPGLSAIREPRNPMEIMEEGISFPPLRVIQLTFKRLSPQLRRVELRMIRTVKSMYVMLDQTLLGPASSSSKGPMDSMND 122
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1071.508.1 vs. uniprot
Analysis Date: 2022-09-16 (
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 1
M F S I S D V S A V W A L V W A W I F A N L A M V I S S V S V V I I S V P V L C F S A K A I R N A C R A G G I L S R I I I Y L R R Q A P S L P T T R A P R D A M E V L E E G L V S P P P S V L Q L S F R S L S P K L R R A E E R M F R A V R S M Y A M L D Q T L C G A P S S S S K A P M E R M N D H A Q * 20 40 60 80 100 120 140 Expect = 7.70e-40 / Id = 61.48 Sequence D8LNC0_ECTSI
Match Name E-value Identity Description
D8LNC0_ECTSI 7.700e-40 61.48 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name:
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
M F S I S D V S A V W A L V W A W I F A N L A M V I S S V S V V I I S V P V L C F S A K A I R N A C R A G G I L S R I I I Y L R R Q A P S L P T T R A P R D A M E V L E E G L V S P P P S V L Q L S F R S L S P K L R R A E E R M F R A V R S M Y A M L D Q T L C G A P S S S S K A P M E R M N D H A Q * 20 40 60 80 100 120 140 Score = Score = Score = Score = Sequence TRANSMEMBRANE CYTOPLASMIC_DOMAIN NON_CYTOPLASMIC_DOMAIN TMhelix
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available PHOBIUS TRANSMEMBRANE Transmembrane region coord: 12..41 None No IPR available PHOBIUS CYTOPLASMIC_DOMAIN Cytoplasmic domain coord: 42..148 None No IPR available PHOBIUS NON_CYTOPLASMIC_DOMAIN Non cytoplasmic domain coord: 1..11 None No IPR available TMHMM TMhelix coord: 15..37
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence
>prot_E-siliculosus-1a_F_contig1071.508.1 ID=prot_E-siliculosus-1a_F_contig1071.508.1|Name=mRNA_E-siliculosus-1a_F_contig1071.508.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=149bp back to top