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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1071.509.1 vs. uniprot
Match: D7FI79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI79_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 6.190e-8 Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -1 Query: 714 AGDTGMGWFEPLAGALRERALQAFEEDVF 800
AGDTGMGWFEPLAGALRERALQAFEEDVF
Sbjct: 3248 AGDTGMGWFEPLAGALRERALQAFEEDVF 3276
BLAST of mRNA_E-siliculosus-1a_F_contig1071.509.1 vs. uniprot
Match: A0A6H5JKW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW6_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 1.960e-7 Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = -1 Query: 714 AGDTGMGWFEPLAGALRERALQAFEEDVF 800
AGDTGMGWFEPLAGALRERAL+AFEEDVF
Sbjct: 2134 AGDTGMGWFEPLAGALRERALRAFEEDVF 2162
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 420 |
| Model size | 801 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927572.9816506-CDS-E-siliculosus-1a_F_contig1071:13661..14081 | 1622927572.9816506-CDS-E-siliculosus-1a_F_contig1071:13661..14081 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1071 13662..14081 + |
| 1696318592.3397892-CDS-E-siliculosus-1a_F_contig1071:13661..14081 | 1696318592.3397892-CDS-E-siliculosus-1a_F_contig1071:13661..14081 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1071 13662..14081 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927572.9954195-UTR-E-siliculosus-1a_F_contig1071:14081..14461 | 1622927572.9954195-UTR-E-siliculosus-1a_F_contig1071:14081..14461 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1071 14082..14461 + |
| 1696318592.352196-UTR-E-siliculosus-1a_F_contig1071:14081..14461 | 1696318592.352196-UTR-E-siliculosus-1a_F_contig1071:14081..14461 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1071 14082..14461 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1071.509.1 >prot_E-siliculosus-1a_F_contig1071.509.1 ID=prot_E-siliculosus-1a_F_contig1071.509.1|Name=mRNA_E-siliculosus-1a_F_contig1071.509.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=140bp
LFLLLCSHEQKIFSSVQLTRTPFAATSQLPRTHTIRGHCHCGSTAITQSL
APAYCTLHKSTCRKVMESWQNGDWSPKHVQYSIQNLTRRSPFATVATPSR
MNAAAVDAKQRTTHFPPSTKRGKARGGGGGDRCCSALAP* back to topmRNA from alignment at E-siliculosus-1a_F_contig1071:13662..14461+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1071.509.1 ID=mRNA_E-siliculosus-1a_F_contig1071.509.1|Name=mRNA_E-siliculosus-1a_F_contig1071.509.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=800bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1071:13662..14461+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGTTTTTGTTGTTGTGTTCACATGAACAAAAAATATTTTCATCCGTCCA
GTTGACGCGGACGCCTTTCGCGGCCACAAGCCAACTACCCAGAACACACA
CAATTCGTGGACATTGTCATTGTGGAAGTACTGCAATAACCCAAAGCCTG
GCCCCCGCCTATTGCACCCTACACAAGAGTACCTGCAGAAAAGTAATGGA
GAGTTGGCAAAACGGCGACTGGTCTCCAAAGCATGTCCAATACAGCATCC
AGAACCTTACGCGGCGCTCGCCATTTGCAACTGTAGCAACACCTAGCCGA
ATGAATGCAGCAGCTGTCGATGCCAAGCAACGAACGACCCACTTTCCCCC
CTCGACAAAGAGGGGCAAGGCACGGGGGGGGGGGGGGGGGGATAGATGTT
GCAGCGCATTGGCACCCTGAGCGGTGCTCCCTTCGAAGGAAAACGAGAGC
CGCCCATGCCATACAACCATCGCAGACACAAGACGCGCGTCGACAAACGC
GGCCCTACTCATCGCAGACAGCAAGCAGGCCAGTCCACATAAAACTAAAA
AACATGCTTGCAGCAGGAAGCAAGCCAGCCAGTCCGCTGCACTCGAAAAA
CGTCCTCCTCGAAGGATTGCAGAAGGGCTTTCAGCATGCGCGCTAGTCCA
CGATACTCCAAAAACATGTTCTCCTCCAAAGCTTGCAGCGAGCAACCCAG
TCCGCTTTGTTCAAAAAACATCCTCCTCGAAAGCTTGCAGCGCTCTCTCC
CGGAGTGCGCCAGCCAACGGCTCAAACCACCCCATGCCCGTATCCCCCGC
back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1071:13662..14461+ >mRNA_E-siliculosus-1a_F_contig1071.509.1 ID=mRNA_E-siliculosus-1a_F_contig1071.509.1|Name=mRNA_E-siliculosus-1a_F_contig1071.509.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1071:13662..14461+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGTTTTTGTTGTTGTGTTCACATGAACAAAAAATATTTTCATCCGTCCA
GTTGACGCGGACGCCTTTCGCGGCCACAAGCCAACTACCCAGAACACACA
CAATTCGTGGACATTGTCATTGTGGAAGTACTGCAATAACCCAAAGCCTG
GCCCCCGCCTATTGCACCCTACACAAGAGTACCTGCAGAAAAGTAATGGA
GAGTTGGCAAAACGGCGACTGGTCTCCAAAGCATGTCCAATACAGCATCC
AGAACCTTACGCGGCGCTCGCCATTTGCAACTGTAGCAACACCTAGCCGA
ATGAATGCAGCAGCTGTCGATGCCAAGCAACGAACGACCCACTTTCCCCC
CTCGACAAAGAGGGGCAAGGCACGGGGGGGGGGGGGGGGGGATAGATGTT
GCAGCGCATTGGCACCCTGATTGTTTTTGTTGTTGTGTTCACATGAACAA
AAAATATTTTCATCCGTCCAGTTGACGCGGACGCCTTTCGCGGCCACAAG
CCAACTACCCAGAACACACACAATTCGTGGACATTGTCATTGTGGAAGTA
CTGCAATAACCCAAAGCCTGGCCCCCGCCTATTGCACCCTACACAAGAGT
ACCTGCAGAAAAGTAATGGAGAGTTGGCAAAACGGCGACTGGTCTCCAAA
GCATGTCCAATACAGCATCCAGAACCTTACGCGGCGCTCGCCATTTGCAA
CTGTAGCAACACCTAGCCGAATGAATGCAGCAGCTGTCGATGCCAAGCAA
CGAACGACCCACTTTCCCCCCTCGACAAAGAGGGGCAAGGCACGGGGGGG
GGGGGGGGGGGATAGATGTTGCAGCGCATTGGCACCCTGA back to top
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