mRNA_E-siliculosus-1a_F_contig1071.509.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1071.509.1
Unique NamemRNA_E-siliculosus-1a_F_contig1071.509.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1071.509.1 vs. uniprot
Match: D7FI79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI79_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 6.190e-8
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -1 
Query:  714 AGDTGMGWFEPLAGALRERALQAFEEDVF 800
            AGDTGMGWFEPLAGALRERALQAFEEDVF
Sbjct: 3248 AGDTGMGWFEPLAGALRERALQAFEEDVF 3276
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BLAST of mRNA_E-siliculosus-1a_F_contig1071.509.1 vs. uniprot
Match: A0A6H5JKW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.960e-7
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = -1 
Query:  714 AGDTGMGWFEPLAGALRERALQAFEEDVF 800
            AGDTGMGWFEPLAGALRERAL+AFEEDVF
Sbjct: 2134 AGDTGMGWFEPLAGALRERALRAFEEDVF 2162
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1071.509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI79_ECTSI6.190e-8100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKW6_9PHAE1.960e-796.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1071contigE-siliculosus-1a_F_contig1071:13662..14461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size420
Model size801
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927572.9816506-CDS-E-siliculosus-1a_F_contig1071:13661..140811622927572.9816506-CDS-E-siliculosus-1a_F_contig1071:13661..14081Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1071 13662..14081 +
1696318592.3397892-CDS-E-siliculosus-1a_F_contig1071:13661..140811696318592.3397892-CDS-E-siliculosus-1a_F_contig1071:13661..14081Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1071 13662..14081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927572.9954195-UTR-E-siliculosus-1a_F_contig1071:14081..144611622927572.9954195-UTR-E-siliculosus-1a_F_contig1071:14081..14461Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1071 14082..14461 +
1696318592.352196-UTR-E-siliculosus-1a_F_contig1071:14081..144611696318592.352196-UTR-E-siliculosus-1a_F_contig1071:14081..14461Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1071 14082..14461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1071.509.1prot_E-siliculosus-1a_F_contig1071.509.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1071 13662..14081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1071.509.1

>prot_E-siliculosus-1a_F_contig1071.509.1 ID=prot_E-siliculosus-1a_F_contig1071.509.1|Name=mRNA_E-siliculosus-1a_F_contig1071.509.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=140bp
LFLLLCSHEQKIFSSVQLTRTPFAATSQLPRTHTIRGHCHCGSTAITQSL
APAYCTLHKSTCRKVMESWQNGDWSPKHVQYSIQNLTRRSPFATVATPSR
MNAAAVDAKQRTTHFPPSTKRGKARGGGGGDRCCSALAP*
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mRNA from alignment at E-siliculosus-1a_F_contig1071:13662..14461+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1071.509.1 ID=mRNA_E-siliculosus-1a_F_contig1071.509.1|Name=mRNA_E-siliculosus-1a_F_contig1071.509.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=800bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1071:13662..14461+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGTTTTTGTTGTTGTGTTCACATGAACAAAAAATATTTTCATCCGTCCA
GTTGACGCGGACGCCTTTCGCGGCCACAAGCCAACTACCCAGAACACACA
CAATTCGTGGACATTGTCATTGTGGAAGTACTGCAATAACCCAAAGCCTG
GCCCCCGCCTATTGCACCCTACACAAGAGTACCTGCAGAAAAGTAATGGA
GAGTTGGCAAAACGGCGACTGGTCTCCAAAGCATGTCCAATACAGCATCC
AGAACCTTACGCGGCGCTCGCCATTTGCAACTGTAGCAACACCTAGCCGA
ATGAATGCAGCAGCTGTCGATGCCAAGCAACGAACGACCCACTTTCCCCC
CTCGACAAAGAGGGGCAAGGCACGGGGGGGGGGGGGGGGGGATAGATGTT
GCAGCGCATTGGCACCCTGAGCGGTGCTCCCTTCGAAGGAAAACGAGAGC
CGCCCATGCCATACAACCATCGCAGACACAAGACGCGCGTCGACAAACGC
GGCCCTACTCATCGCAGACAGCAAGCAGGCCAGTCCACATAAAACTAAAA
AACATGCTTGCAGCAGGAAGCAAGCCAGCCAGTCCGCTGCACTCGAAAAA
CGTCCTCCTCGAAGGATTGCAGAAGGGCTTTCAGCATGCGCGCTAGTCCA
CGATACTCCAAAAACATGTTCTCCTCCAAAGCTTGCAGCGAGCAACCCAG
TCCGCTTTGTTCAAAAAACATCCTCCTCGAAAGCTTGCAGCGCTCTCTCC
CGGAGTGCGCCAGCCAACGGCTCAAACCACCCCATGCCCGTATCCCCCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1071:13662..14461+

>mRNA_E-siliculosus-1a_F_contig1071.509.1 ID=mRNA_E-siliculosus-1a_F_contig1071.509.1|Name=mRNA_E-siliculosus-1a_F_contig1071.509.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1071:13662..14461+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGTTTTTGTTGTTGTGTTCACATGAACAAAAAATATTTTCATCCGTCCA
GTTGACGCGGACGCCTTTCGCGGCCACAAGCCAACTACCCAGAACACACA
CAATTCGTGGACATTGTCATTGTGGAAGTACTGCAATAACCCAAAGCCTG
GCCCCCGCCTATTGCACCCTACACAAGAGTACCTGCAGAAAAGTAATGGA
GAGTTGGCAAAACGGCGACTGGTCTCCAAAGCATGTCCAATACAGCATCC
AGAACCTTACGCGGCGCTCGCCATTTGCAACTGTAGCAACACCTAGCCGA
ATGAATGCAGCAGCTGTCGATGCCAAGCAACGAACGACCCACTTTCCCCC
CTCGACAAAGAGGGGCAAGGCACGGGGGGGGGGGGGGGGGGATAGATGTT
GCAGCGCATTGGCACCCTGATTGTTTTTGTTGTTGTGTTCACATGAACAA
AAAATATTTTCATCCGTCCAGTTGACGCGGACGCCTTTCGCGGCCACAAG
CCAACTACCCAGAACACACACAATTCGTGGACATTGTCATTGTGGAAGTA
CTGCAATAACCCAAAGCCTGGCCCCCGCCTATTGCACCCTACACAAGAGT
ACCTGCAGAAAAGTAATGGAGAGTTGGCAAAACGGCGACTGGTCTCCAAA
GCATGTCCAATACAGCATCCAGAACCTTACGCGGCGCTCGCCATTTGCAA
CTGTAGCAACACCTAGCCGAATGAATGCAGCAGCTGTCGATGCCAAGCAA
CGAACGACCCACTTTCCCCCCTCGACAAAGAGGGGCAAGGCACGGGGGGG
GGGGGGGGGGGATAGATGTTGCAGCGCATTGGCACCCTGA
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