mRNA_E-siliculosus-1a_F_contig107.503.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig107.503.1
Unique NamemRNA_E-siliculosus-1a_F_contig107.503.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: D7FJ04_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ04_ECTSI)

HSP 1 Score: 775 bits (2002), Expect = 4.730e-277
Identity = 418/452 (92.48%), Postives = 421/452 (93.14%), Query Frame = 1 
Query:  166 MVLGHHIEPVVSLLLAADNDPSLRCGSSLGQTQRQLCERAHITLGDLAQQAPDVIGAASDLADSAQASVGESLGAIGNVWDSIVDTVTSAKDQATDTTLGSVDALKSQVDELSANALSPFQRLGEDISNSLSGQLDSLKIGAQGAVGEAQTQFGQSVAENIGNPVQEGLGQVFSKFGTSPEELLKEEQTLTNGVQQAIKGVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIMQQQPAKPSPKTSPSGTPSSTLGREAKELITKATREAEEILQQARSTGAAQAASLLEEAETEALLILKGAEVEKEALLLRANKTEPNTEAETGPAGSEAK 1521
            MVLGHHIEPVVSLLLAADNDPSL                   TLGDLAQQAPDVIGAASDLADSAQASVGESLGAIGNVWDSIVDTVTSAKDQATDTTLGSVDALK QVDELSANALSPFQRLGEDISNSLSGQLDSLKIGAQGAVGEAQTQFGQSVAENIGNPVQEG+GQVFSKFGTSPEELLKEEQTLTNGVQQAIKGVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNL GLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIMQQQP +PSPKT  SGTPSSTL REAKELITKA RE    LQQARSTGAAQAASLLEEAETEALLILKGAEVEKEALLLRANKTEP+TEAET PAGSEAK
Sbjct:    1 MVLGHHIEPVVSLLLAADNDPSLS------------------TLGDLAQQAPDVIGAASDLADSAQASVGESLGAIGNVWDSIVDTVTSAKDQATDTTLGSVDALKYQVDELSANALSPFQRLGEDISNSLSGQLDSLKIGAQGAVGEAQTQFGQSVAENIGNPVQEGMGQVFSKFGTSPEELLKEEQTLTNGVQQAIKGVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLGGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIMQQQPTEPSPKTPSSGTPSSTLRREAKELITKAKREXXXXLQQARSTGAAQAASLLEEAETEALLILKGAEVEKEALLLRANKTEPSTEAETRPAGSEAK 434
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: A0A835YXE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE1_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.150e-52
Identity = 88/160 (55.00%), Postives = 113/160 (70.62%), Query Frame = 1 
Query:  745 VQQAIKGVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIM 1224
            +Q  +   E+VA P   F AEN  +LPLW GM+  P     +KIM  Y  ++LAAL+Y WLTYE  QNPVSL GF+ G  +L+ LTKGF +EVSVA  W+HF+A+DLF+GRWVYLD +RN ++  HSL LCYLFGP G LSHLLTRG++ + +  V DI+
Sbjct:  151 LQHIVTIAEKVATPKRTFLAENILVLPLWGGMIFAPNNKYVQKIMEGYSVIILAALVYAWLTYEALQNPVSLAGFSGGAFDLDTLTKGFTQEVSVADGWAHFIAQDLFVGRWVYLDSKRNSVWAAHSLALCYLFGPIGVLSHLLTRGLSGIFRQDVTDIL 310
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: A0A7S3Y5E5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5E5_HETAK)

HSP 1 Score: 184 bits (466), Expect = 8.100e-47
Identity = 84/169 (49.70%), Postives = 117/169 (69.23%), Query Frame = 1 
Query:  766 VERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIMQQQPAKPSPKTSPSGT 1272
            +E    P+T+F  +N A LPLW+ M+ +P+  +TK +M SY P+   +++Y+W  Y  FQ+P +LQGF+  IT+L  LTKGFG EV+VATAW+HF+A+DLF+GR++YLDG +N +FT+HS+ L YLFGPAG LSHL+TRG   ++ PG   I     A   PK  P  T
Sbjct:  280 LETKLTPNTVFTIDNVASLPLWLAMIGFPQNGVTKGLMKSYLPISAFSMLYVWSAYLAFQDPQALQGFSEAITSLPALTKGFGSEVAVATAWAHFIAQDLFVGRFIYLDGLKNGVFTRHSVALAYLFGPAGLLSHLVTRGFVGLLNPGQDIIEAGMSASTIPKPMPQPT 448
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: W7U388_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U388_9STRA)

HSP 1 Score: 178 bits (452), Expect = 8.040e-45
Identity = 100/245 (40.82%), Postives = 142/245 (57.96%), Query Frame = 1 
Query:  532 LGEDISNSLSGQLDSLKIGAQGAVGEAQTQFGQSVAENIGN---PVQEGLGQ----------VFSKFGT-SPEELLKEEQTLTNGVQQAIKGVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIM 1224
            LG +I   LS    +LK      VG   +  G +  E  G+   P Q  L Q          V S+F   + +EL K+ +TL+     A++ ++ V  P  LF AEN  ILP W  +++ P     K +++SY P+++AAL Y W  Y  FQ+P +L+GFAS I++L  L+KG G E   ATAW+HF+A+DLF+GRW++LDG RN ++T HSL L +LFGP G LSHLLTR    + +  + DIM
Sbjct:  184 LGAEIKTELS----ALKSQVGEIVGSRLSGLGSAFTEKAGDVLIPYQPFLEQTKRQLGDKFSVVSQFAEQATQELSKDAETLS----PALRALKTVGTPRNLFNAENIVILPFWASVILAPSNTFVKTLVSSYLPVLVAALAYTWSAYLAFQDPAALEGFAS-ISDLSALSKGLGTEAGTATAWAHFIAQDLFVGRWIFLDGIRNGVWTAHSLTLAFLFGPTGILSHLLTRSFVKIFRWDIADIM 419
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: A0A7S0KR27_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0KR27_MICPS)

HSP 1 Score: 164 bits (416), Expect = 4.870e-43
Identity = 68/147 (46.26%), Postives = 101/147 (68.71%), Query Frame = 1 
Query:  763 GVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVK 1203
            G+E +  P T+F  ENAAI P W+GM+ +P+  +T+ +M SY   +L   +Y++LTY  F +P  ++ F++G  +L  L+KGF  E  +A  W+HF+A DLF+GRW+YLD ++N +F  HSL+LC  FGP G +SH LTRGVTS+ +
Sbjct:   55 GLEWIPTPETVFDVENAAIFPFWLGMIAFPKNKVTETVMGSYAVPILLGFVYIYLTYYSFSDPRIIEAFSTGKPDLAALSKGFSYEWCMAVGWAHFIAMDLFVGRWIYLDARKNDVFAAHSLLLCLFFGPTGVISHTLTRGVTSLAR 201
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: A0A7S3Y5F1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5F1_HETAK)

HSP 1 Score: 162 bits (411), Expect = 1.230e-42
Identity = 74/145 (51.03%), Postives = 102/145 (70.34%), Query Frame = 1 
Query:  838 MVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVVKPGVRDIMQQQPAKPSPKTSPSGT 1272
            M+ +P+  +TK +M SY P+   +++Y+W  Y  FQ+P +LQGF+  IT+L  LTKGFG EV+VATAW+HF+A+DLF+GR++YLDG +N +FT+HS+ L YLFGPAG LSHL+TRG   ++ PG   I     A   PK  P  T
Sbjct:    1 MIGFPQNGVTKGLMKSYLPISAFSMLYVWSAYLAFQDPQALQGFSEAITSLPALTKGFGSEVAVATAWAHFIAQDLFVGRFIYLDGLKNGVFTRHSVALAYLFGPAGLLSHLVTRGFVGLLNPGQDIIEAGMSASTIPKPMPQPT 145
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: C1N0R2_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N0R2_MICPC)

HSP 1 Score: 140 bits (352), Expect = 2.740e-35
Identity = 60/134 (44.78%), Postives = 87/134 (64.93%), Query Frame = 1 
Query:  790 TLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVT 1191
            T+F  EN AI PLW+GM+  P+  +T+ +M+S     +   +Y++LT+  F +P  L  F++G  +L  L KGF  E  VA  W+HF+A DLF GRW+YLD ++N +F  HSL+LC  FGP G +SH+ TR +T
Sbjct:    2 TVFNVENVAIFPLWLGMIFAPKSGVTRAVMDSALVPCVCGFVYVYLTWYSFHDPRILDAFSTGKPDLAALAKGFSYEWCVAVGWAHFIAMDLFAGRWIYLDARKNDVFAAHSLLLCLFFGPTGAISHVTTRAIT 135
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: A0A0G4GWJ9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GWJ9_VITBC)

HSP 1 Score: 140 bits (354), Expect = 4.870e-34
Identity = 64/135 (47.41%), Postives = 86/135 (63.70%), Query Frame = 1 
Query:  784 PSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGV 1188
            PS +F A NA +LP W  MV+ P   +T+K+M S  P ++  L+Y+WL       P +++G   G   L  LTK F  E  VAT W HFLAEDLF+GRWVYLDG++N +  +HS +L  LFGP G +SHL+TR +
Sbjct:   97 PSAVFTASNAFVLPFWALMVIAPGAQVTEKLMRSVTPFIVLGLLYLWLAVISSTFPEAVEGLGQGAGQLPVLTKAFSLEPVVATGWVHFLAEDLFVGRWVYLDGRKNDVPIRHSCLLSLLFGPLGVVSHLVTRDI 231
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: UPI001F29C295 (DUF4281 domain-containing protein n=1 Tax=Tychonema sp. BBK16 TaxID=2699888 RepID=UPI001F29C295)

HSP 1 Score: 125 bits (315), Expect = 5.150e-30
Identity = 60/138 (43.48%), Postives = 87/138 (63.04%), Query Frame = 1 
Query:  784 PSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITN--LEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVT 1191
            P  +F   N  +LP W  M++ P   +T+K+MNS+ P VL AL+Y++L    F + ++ +  A+ ++N  L  + K  GEE + AT W HFL  DLF+GRW+YL+GQR  ++T HSL LC   GP G LSH+LT  +T
Sbjct:    3 PELIFTVGNLFVLPFWAIMILLPNWGITRKVMNSFIPFVLLALMYIYL----FASSITPEN-AAALSNPKLADIAKFLGEETAAATGWIHFLVMDLFVGRWIYLEGQRTGVWTIHSLALCLFAGPIGLLSHILTHWIT 135
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Match: UPI0018812FA2 (ABA4-like family protein n=4 Tax=Microcoleaceae TaxID=1892252 RepID=UPI0018812FA2)

HSP 1 Score: 125 bits (313), Expect = 1.120e-29
Identity = 59/139 (42.45%), Postives = 89/139 (64.03%), Query Frame = 1 
Query:  784 PSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLVLAALIYMWLTYECFQNPVSLQGFASGITN--LEGLTKGFGEEVSVATAWSHFLAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTS 1194
            P  +F A N  +LP W  M++ P   +T+K+MNS+ P V+ AL+Y++L    F + ++ +  A+ ++N  L  + K  GEE + AT W HFL  DLF+GRW+YL+GQR  ++T HSL LC   GP G LSH++T  +T+
Sbjct:    3 PELIFDAGNLFVLPFWAIMILLPNWGITRKVMNSFIPFVVLALLYIYL----FGSSLTAEN-AAALSNPKLADIAKFLGEETAAATGWIHFLVMDLFVGRWIYLEGQRTGVWTVHSLALCLFAGPMGLLSHIVTAWITA 136
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ04_ECTSI4.730e-27792.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YXE1_9STRA1.150e-5255.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3Y5E5_HETAK8.100e-4749.70Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
W7U388_9STRA8.040e-4540.82Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S0KR27_MICPS4.870e-4346.26Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
A0A7S3Y5F1_HETAK1.230e-4251.03Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
C1N0R2_MICPC2.740e-3544.78Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0A0G4GWJ9_VITBC4.870e-3447.41Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
UPI001F29C2955.150e-3043.48DUF4281 domain-containing protein n=1 Tax=Tychonem... [more]
UPI0018812FA21.120e-2942.45ABA4-like family protein n=4 Tax=Microcoleaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig107contigE-siliculosus-1a_F_contig107:64482..69778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1620
Model size2097
Exons7
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs28P8V@1,2QVVZ@2759
EggNOG free text desc.xanthophyll metabolic process
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006082,GO:0006629,GO:0006714,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009687,GO:0009688,GO:0009941,GO:0009987,GO:0016053,GO:0016106,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016122,GO:0016123,GO:0019222,GO:0019752,GO:0031323,GO:0031967,GO:0031975,GO:0032787,GO:0032928,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043288,GO:0043289,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046165,GO:0046394,GO:0050789,GO:0050794,GO:0065007,GO:0071704,GO:0072330,GO:0090322,GO:1901576,GO:1901615,GO:1901617,GO:1902644,GO:1902645,GO:2000377
Seed eggNOG ortholog2880.D7FJ04
Seed ortholog evalue2.2e-224
Seed ortholog score785.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig107.503.1prot_E-siliculosus-1a_F_contig107.503.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig107 64959..69778 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927572.3789017-UTR-E-siliculosus-1a_F_contig107:64481..649581622927572.3789017-UTR-E-siliculosus-1a_F_contig107:64481..64958Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig107 64482..64958 -
1696318591.9676864-UTR-E-siliculosus-1a_F_contig107:64481..649581696318591.9676864-UTR-E-siliculosus-1a_F_contig107:64481..64958Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig107 64482..64958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927572.389083-CDS-E-siliculosus-1a_F_contig107:64958..651861622927572.389083-CDS-E-siliculosus-1a_F_contig107:64958..65186Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 64959..65186 -
1696318591.9789574-CDS-E-siliculosus-1a_F_contig107:64958..651861696318591.9789574-CDS-E-siliculosus-1a_F_contig107:64958..65186Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 64959..65186 -
1622927572.3985956-CDS-E-siliculosus-1a_F_contig107:65347..659861622927572.3985956-CDS-E-siliculosus-1a_F_contig107:65347..65986Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 65348..65986 -
1696318591.9884608-CDS-E-siliculosus-1a_F_contig107:65347..659861696318591.9884608-CDS-E-siliculosus-1a_F_contig107:65347..65986Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 65348..65986 -
1622927572.4087534-CDS-E-siliculosus-1a_F_contig107:66123..662131622927572.4087534-CDS-E-siliculosus-1a_F_contig107:66123..66213Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 66124..66213 -
1696318591.998395-CDS-E-siliculosus-1a_F_contig107:66123..662131696318591.998395-CDS-E-siliculosus-1a_F_contig107:66123..66213Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 66124..66213 -
1622927572.4214618-CDS-E-siliculosus-1a_F_contig107:67033..672071622927572.4214618-CDS-E-siliculosus-1a_F_contig107:67033..67207Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 67034..67207 -
1696318592.0082366-CDS-E-siliculosus-1a_F_contig107:67033..672071696318592.0082366-CDS-E-siliculosus-1a_F_contig107:67033..67207Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 67034..67207 -
1622927572.4335668-CDS-E-siliculosus-1a_F_contig107:67549..675941622927572.4335668-CDS-E-siliculosus-1a_F_contig107:67549..67594Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 67550..67594 -
1696318592.0173678-CDS-E-siliculosus-1a_F_contig107:67549..675941696318592.0173678-CDS-E-siliculosus-1a_F_contig107:67549..67594Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 67550..67594 -
1622927572.4728115-CDS-E-siliculosus-1a_F_contig107:69047..692011622927572.4728115-CDS-E-siliculosus-1a_F_contig107:69047..69201Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 69048..69201 -
1696318592.0268638-CDS-E-siliculosus-1a_F_contig107:69047..692011696318592.0268638-CDS-E-siliculosus-1a_F_contig107:69047..69201Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 69048..69201 -
1622927572.4844623-CDS-E-siliculosus-1a_F_contig107:69488..697781622927572.4844623-CDS-E-siliculosus-1a_F_contig107:69488..69778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 69489..69778 -
1696318592.035992-CDS-E-siliculosus-1a_F_contig107:69488..697781696318592.035992-CDS-E-siliculosus-1a_F_contig107:69488..69778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig107 69489..69778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig107.503.1

>prot_E-siliculosus-1a_F_contig107.503.1 ID=prot_E-siliculosus-1a_F_contig107.503.1|Name=mRNA_E-siliculosus-1a_F_contig107.503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=540bp
MTGSSTLFVVSSVAILARDCNSLLVHPHLSDSRLSTSAATSYSSSSSSSG
TRPLRMVLGHHIEPVVSLLLAADNDPSLRCGSSLGQTQRQLCERAHITLG
DLAQQAPDVIGAASDLADSAQASVGESLGAIGNVWDSIVDTVTSAKDQAT
DTTLGSVDALKSQVDELSANALSPFQRLGEDISNSLSGQLDSLKIGAQGA
VGEAQTQFGQSVAENIGNPVQEGLGQVFSKFGTSPEELLKEEQTLTNGVQ
QAIKGVERVAPPSTLFYAENAAILPLWVGMVVWPEEPLTKKIMNSYGPLV
LAALIYMWLTYECFQNPVSLQGFASGITNLEGLTKGFGEEVSVATAWSHF
LAEDLFIGRWVYLDGQRNKIFTKHSLVLCYLFGPAGFLSHLLTRGVTSVV
KPGVRDIMQQQPAKPSPKTSPSGTPSSTLGREAKELITKATREAEEILQQ
ARSTGAAQAASLLEEAETEALLILKGAEVEKEALLLRANKTEPNTEAETG
PAGSEAKVGSEAKAGSEAKAGSEAKAGSEAKTASAKIEP*
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mRNA from alignment at E-siliculosus-1a_F_contig107:64482..69778-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig107.503.1 ID=mRNA_E-siliculosus-1a_F_contig107.503.1|Name=mRNA_E-siliculosus-1a_F_contig107.503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5297bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:64482..69778- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACTGGGTCATCTACGTTGTTTGTGGTATCGAGTGTAGCCATCCTGGC
GCGAGATTGCAACAGCCTTCTAGTGCATCCACATTTATCCGATAGTCGAC
TCTCTACGTCGGCAGCAACTTCGTACAGCAGCAGCAGCAGCAGCAGCGGT
ACGCGGCCACTTCGCATGGTGCTCGGCCATCACATCGAACCCGTGGTATC
GCTACTCTTGGCCGCAGATAATGACCCTTCGCTCAGGTGTGGAAGTTCTC
TGGGCCAAACGCAACGTCAATTATGTGAGAGAGCGCACATGTAAACTTTA
ACTTTGGATATCCATCCCGCGACGAGTTCAACTACAGCGGTATCCCAACG
GACACCGCATCTACGCCAGCCCTACCATGTCATCGCTTTGCCCAAATAGA
ATGTATATGTGAACTTTTACGACTCTTCCCTACTTTCAATTGGTGGACGC
GTTGGCGTATCTCGCTTTTGAATGGGCGCTCCGAGGACTGAGTTATGTGT
ATGCTGTGGGCGTGCCCCTGACTTGTGTAATTGGTCTCCTTCGTAACAAA
TGCAACATGCAACAAACGGTCACGCAGTACTCTCGGCGATCTGGCACAGC
AAGCTCCGGACGTGATAGGAGCTGCTTCAGATCTGGCAGACTCTGCGCAG
GCTTCGGTTGGCGAATCCCTTGGTGCAATAGGAAATGTTTGGGACTCGAT
CGTCGACACGGTTACGTCGGCCAAAGACCAGGTGTGTGTGTGGGGAAGCC
GAAGTTGAAGTATATGTGTGCTGCATACAAGGGCGCTTCGAGTAGGCTGT
ATGTACAATATGGCGATGTATGTGCGAGTCGAGTTTTAAGATGAGAGGCA
AGAGACGTGTGGCATATGCATGTGTATGTGAAGAGTTGTTGTGCTCATTT
ATTTGTTCGAAGAGCGGATACATACGCACAATGGGTGTATACCGAAGTAA
AGCGACGGCCGGAGGACAGCGAGAGGAAAACTTGCAGATGTGGCAAGTGG
CAAGAAACACCGCAGCAAGAACAATGTCGTCGAGTCATGTAGTTGTACGC
ATACAGAGACCATGCACCGAAATGGACCTGTATGTACCGCTCCAACACCA
CACCGGAAAACAAATAATTCCAAGTTTTATATTATATCCCGATAGGGCGG
CGGGGAGGACATACACATTTGCCCCGATGGACGCAACGCGTCCTAAGCTT
TACTTCCCTAGAGGTACTGATTTCTGATTCCGAACCCTCCACCCACTGCT
GTCCACATTTTTTCAATGGCCTAAGAACCTAGGATATGGCCCTATCCCCA
AACCGACCCAAAGGGCTCGGTTGCTGTGCACTGCTGTGCACCATTAGTAG
TGCTAGGTTGCTGTGCACGGGCTGCACCTGCCCAAGGAGTCTTCCAAGAT
ATGGCATTTCGACATGGAGACCACCACGTTAGACCCAGTCACCCATTCGT
AGTACTTTGTACACAGTGTACTTGAGGTGTAGTTTCCAGGCTTCTTTGCG
CACGACACCGAGCGCAACCCCCCCCCCGCTTTTCTTCGGGAGCGAAAGGG
AGACACACTACAGCAGTAGGGTACTTTGTCTTGTGGTATGCGGAGACTTG
GTTGCTTGGTCGTCGCGTCTGGCGAGGGTATGTACATGTAGCCAGCGCAC
AAAATTGGACGACGTCAGCCTCTTGAGCAATGTACGTATGAATGTGGCCT
GGACTGTCACTAAATCGTGCTGTGATTGGGCGAGTCGTGGTTGATCTCAG
ACGCGACTTTCTGCCCTCCCTAGCGCGTGGCACAGCGGGAGGGCGCTCGC
AACTCAGGGCTATCCTTAGATTCAAGTCTCGCCACGTGGCGAGGTCCAGG
GGCGAAGAAACCGCAAAAAAACAGCTCTAGACGCACGAGAGCATCAGGAT
TGCAAATGCTGCAAGCTCGTGAGCCCTCAGCCCGCAGGAAGGTCGTCTAT
AGGTCCAGTACAGCTGCACTCAGTAGCACTGGTTCTTAAAATTTGTATTC
CTTTCGAGGGACAGACCTTGAGCATACAGCAGTTGAGGGCGATTGCTGGG
ATCGATATGCATACCCGGCATACACATCAATTCGACGCTCTACCTCCTTG
CGTTGCTTATGGTCAAGCCGTTGCATTTTCAACTGATGACCTGACGCCAC
TTCTACATGATGTTGTGTTTTCACGTTTCCACAGGCTACCGACACCACTC
TGGGATCGGTTGATGCGCTCAAGTCTCAGGTGCGAAGTTAGGCAAGAGTC
GTGTCTTGCCAATATTTTGAGGCACCTCGCCGCATAGGTGCGATCGATTG
AGCGATTCGCCGTCGTGGTGCAGGGCTTGATGTGCTTCTTGCGCGTTTCG
CCTAGCGGAGAGTCTTCCTGTTTTTCTACAAATTTGTCATCCAGGCAATG
TGCTGCTGTACCTACTGCCTGGCCTCACGAAGCCCCATCCGGTTGCCAGC
AGAAGATTTGCTCTGCGGGGTATGTCTCCATCAAGTAACGGTTTCCATGC
GCATGTCCACCATCTACTTACGATGTGACCATCTTTGTTTACTGCATCGG
CCATGATTATGATTGCGACAGGTGGACGAGTTAAGTGCGAATGCTCTCTC
CCCCTTTCAACGGCTTGGTGAGGATATTTCGAATAGTTTAAGCGGACAGC
TGGACAGCTTAAAAATTGGAGCGCAGGGCGCTGTGGGAGAAGCACAGACG
CAGTTCGGCCAGTCTGTGGCGGAAAACATCGGAAATCCTGTCCAGGTGCC
CACTTTGCAGCTCTTAAGTGCCCGGTGTGGGCTGCACGTCTAATCCTCTC
TTTACAAGAGCTGTCGTTCTCGGAAAACCTTGCTTCGGTCGATGTGTGCG
TACACACGCTTGTAATAGATGGGATGGTTAAAGGGAACGCGGACAAGGGA
GGCCAAACGGTTCTAGACTACATCGAACATGACGCAGGGTCGAAAGAATG
AAAATGCTGCTTCCATATCACTAGCTGGTATTGAATAGACGCGACGCGCG
CGATGGGACGCTCAGATCTACTGATGGGACTGCTGTAATATCGAAGGCTG
CCGCTGGCCCCAAAACTCCTCAAGTGGGGATCCAAACCAAGCAGTCGTTG
CCGCTGTAATGTCCGCCACGAGCCTTAATTTCCGATACTGCGGGCGTCCA
AGGATAGCTAGTTGTAGGAGCTACTGCTGTGGCTATGGGTCTGTGATGGT
GAATGCTGCGAAGATGAATGATTTGACCCAGCATTGCGGACTTTCCGGAC
CGAAGCTACAGCCTTCGATGGCACTAGCTAGCCCAACAGCAGATCTGAGC
GTGTCAGCACACCTCCGAAAAAATTTCAGTTTAGGTTTCGGGGAAAATTT
CTTTGAGTTCGCAGGAAATAAGTTCCCCGTCAATAGATCGGCCTTGACAT
ATCTCGTGCATGGTTGCTGGGGGCTTGTTTTGTCGTTTCAAAACCACTCA
CAATAAATATTGTTGGTTGTCCACGTCCCCTTCAAGCTCACAATCGTCAA
ACGCACTTGCCTCCTCCTTTTGCGAATAAGATGTCCCTCTAAGCATCCGT
TTCGAACGATGGCAGGAGGGCCTGGGTCAAGTTTTCAGCAAGTTCGGAAC
CAGCCCCGAGGAGCTACTCAAAGAGGAACAGACATTAACAAACGGCGTGC
AGCAGGTACGGTTGTGGTTTCCAGTCCTTGGTCATATCTCGGCGTCATGA
AACGATTGGTCCGGTTGAACGTGCTTGAAGCGCCGACCAGTTCTCAGTCA
CCTGATTTCCCCGCCGCGCATTCGTTTCTGTAACGGGCACAGGCGATCAA
GGGGGTCGAGCGGGTAGCACCTCCGAGCACTCTGTTCTACGCAGAAAATG
CCGCGATTCTGCCCTTGTGGGTAGGTATGGTTGTTTGGCCTGAAGAGCCT
CTGACCAAGAAAATCATGAACAGCTACGGGCCCCTCGTCTTGGCGGCTCT
GATCTACATGTGGCTGACCTACGAGTGCTTCCAAAACCCTGTCTCACTGC
AAGGGTTTGCGAGTGGCATCACTAATCTTGAAGGGTTAACAAAAGGTTTT
GGAGAAGAGGTATCGGTGGCGACAGCCTGGTCCCACTTTCTGGCAGAGGA
TCTTTTCATCGGACGTTGGGTGTACTTGGATGGCCAGAGGAACAAAATCT
TCACAAAGCACTCGCTGGTCTTGTGCTACTTGTTCGGCCCAGCTGGTTTC
TTGAGTCACTTGCTTACCCGCGGGGTGACGAGCGTGGTCAAGCCAGGTGT
CCGAGATATCATGCAACAACAGCCTGCCAAACCATCGCCGAAAACGTCTC
CTTCCGGGACACCTTCCTCGACACTTGGTAGAGAGGCTAAAGAGCTCATC
ACCAAAGCCACCCGGGAAGCAGAAGAAATACTCCAGCAAGCGCGATCAAC
CGGAGCTGCGCAAGCTGCATCTTTGCTGGAGGTGGGTGCTATTCATACAT
GTCATGCCTGGTTTCCGAGACTGGATTCGATGACCTCCTTCGCACGACGA
GGTTGGAGATCTATGTATGAACTGTTTTGTCATGCGAGACTCAAAGCGCA
CCGTTATTGCCTTGGCGTTCTGTTCTGTTTGTTCTTGCCCAGGAGGCGGA
GACGGAGGCCCTTCTGATATTGAAAGGAGCAGAGGTAGAGAAAGAAGCAC
TCCTGTTGAGAGCGAACAAGACTGAGCCAAATACGGAGGCGGAGACTGGA
CCAGCAGGCTCAGAGGCAAAGGTCGGATCAGAGGCAAAGGCTGGGTCAGA
GGCAAAGGCCGGATCAGAGGCAAAGGCTGGGTCAGAGGCAAAGACCGCGT
CAGCAAAAATCGAGCCATAAATCCTTTGACGGGAACGACTTGTATTTGAT
ATCAAGAATTATGGAATATGCTGAGCACTAAGCCAGAGTAGTGCTGGGGT
CGGGTCAGATTCGAGAGTGATGAAGGCATCCATCCGCTCGTGAGTTTAGG
GGCGTTGCAAGGAGCCTGCCAACATGTGCATTTTGCAAGATTATATTTTG
ACTGAATTGTTTTCGGAGGGAACCTACCAACTGCTGTTACCATAGTTTCT
CTTTAGCGCACAGTGCTACTACGTCGGGAAATTGGTCACGTTTACATACG
TTGTCACACTTTGCCAAACCGTTTCCACGAGACTAGCCGATGATGTCTGG
TTGGTGGTTAGGGTTAGGGTTCCGGCAGAGTCGTAGCACCCTTGGCCATC
ATGCGCAGCTGTGCTGTCGTTGTTAGCACGCTGACTCACATTTTCCGGCA
GCGTTTGTACATCAATCGCTGTCTCCGCTACTGTAGTCTAAAAAAGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:64482..69778-

>mRNA_E-siliculosus-1a_F_contig107.503.1 ID=mRNA_E-siliculosus-1a_F_contig107.503.1|Name=mRNA_E-siliculosus-1a_F_contig107.503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3240bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:64482..69778- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACTGGGTCATCTACGTTGTTTGTGGTATCGAGTGTAGCCATCCTGGC
GCGAGATTGCAACAGCCTTCTAGTGCATCCACATTTATCCGATAGTCGAC
TCTCTACGTCGGCAGCAACTTCGTACAGCAGCAGCAGCAGCAGCAGCGGT
ACGCGGCCACTTCGCATGGTGCTCGGCCATCACATCGAACCCGTGGTATC
GCTACTCTTGGCCGCAGATAATGACCCTTCGCTCAGGTGTGGAAGTTCTC
TGGGCCAAACGCAACGTCAATTATGTGAGAGAGCGCACATATGACTGGGT
CATCTACGTTGTTTGTGGTATCGAGTGTAGCCATCCTGGCGCGAGATTGC
AACAGCCTTCTAGTGCATCCACATTTATCCGATAGTCGACTCTCTACGTC
GGCAGCAACTTCGTACAGCAGCAGCAGCAGCAGCAGCGGTACGCGGCCAC
TTCGCATGGTGCTCGGCCATCACATCGAACCCGTGGTATCGCTACTCTTG
GCCGCAGATAATGACCCTTCGCTCAGGTGTGGAAGTTCTCTGGGCCAAAC
GCAACGTCAATTATGTGAGAGAGCGCACATTACTCTCGGCGATCTGGCAC
AGCAAGCTCCGGACGTGATAGGAGCTGCTTCAGATCTGGCAGACTCTGCG
CAGGCTTCGGTTGGCGAATCCCTTGGTGCAATAGGAAATGTTTGGGACTC
GATCGTCGACACGGTTACGTCGGCCAAAGACCAGTACTCTCGGCGATCTG
GCACAGCAAGCTCCGGACGTGATAGGAGCTGCTTCAGATCTGGCAGACTC
TGCGCAGGCTTCGGTTGGCGAATCCCTTGGTGCAATAGGAAATGTTTGGG
ACTCGATCGTCGACACGGTTACGTCGGCCAAAGACCAGGCTACCGACACC
ACTCTGGGATCGGTTGATGCGCTCAAGTCTCAGGCTACCGACACCACTCT
GGGATCGGTTGATGCGCTCAAGTCTCAGGTGGACGAGTTAAGTGCGAATG
CTCTCTCCCCCTTTCAACGGCTTGGTGAGGATATTTCGAATAGTTTAAGC
GGACAGCTGGACAGCTTAAAAATTGGAGCGCAGGGCGCTGTGGGAGAAGC
ACAGACGCAGTTCGGCCAGTCTGTGGCGGAAAACATCGGAAATCCTGTCC
AGGTGGACGAGTTAAGTGCGAATGCTCTCTCCCCCTTTCAACGGCTTGGT
GAGGATATTTCGAATAGTTTAAGCGGACAGCTGGACAGCTTAAAAATTGG
AGCGCAGGGCGCTGTGGGAGAAGCACAGACGCAGTTCGGCCAGTCTGTGG
CGGAAAACATCGGAAATCCTGTCCAGGAGGGCCTGGGTCAAGTTTTCAGC
AAGTTCGGAACCAGCCCCGAGGAGCTACTCAAAGAGGAACAGACATTAAC
AAACGGCGTGCAGCAGGAGGGCCTGGGTCAAGTTTTCAGCAAGTTCGGAA
CCAGCCCCGAGGAGCTACTCAAAGAGGAACAGACATTAACAAACGGCGTG
CAGCAGGCGATCAAGGGGGTCGAGCGGGTAGCACCTCCGAGCACTCTGTT
CTACGCAGAAAATGCCGCGATTCTGCCCTTGTGGGTAGGTATGGTTGTTT
GGCCTGAAGAGCCTCTGACCAAGAAAATCATGAACAGCTACGGGCCCCTC
GTCTTGGCGGCTCTGATCTACATGTGGCTGACCTACGAGTGCTTCCAAAA
CCCTGTCTCACTGCAAGGGTTTGCGAGTGGCATCACTAATCTTGAAGGGT
TAACAAAAGGTTTTGGAGAAGAGGTATCGGTGGCGACAGCCTGGTCCCAC
TTTCTGGCAGAGGATCTTTTCATCGGACGTTGGGTGTACTTGGATGGCCA
GAGGAACAAAATCTTCACAAAGCACTCGCTGGTCTTGTGCTACTTGTTCG
GCCCAGCTGGTTTCTTGAGTCACTTGCTTACCCGCGGGGTGACGAGCGTG
GTCAAGCCAGGTGTCCGAGATATCATGCAACAACAGCCTGCCAAACCATC
GCCGAAAACGTCTCCTTCCGGGACACCTTCCTCGACACTTGGTAGAGAGG
CTAAAGAGCTCATCACCAAAGCCACCCGGGAAGCAGAAGAAATACTCCAG
CAAGCGCGATCAACCGGAGCTGCGCAAGCTGCATCTTTGCTGGAGGCGAT
CAAGGGGGTCGAGCGGGTAGCACCTCCGAGCACTCTGTTCTACGCAGAAA
ATGCCGCGATTCTGCCCTTGTGGGTAGGTATGGTTGTTTGGCCTGAAGAG
CCTCTGACCAAGAAAATCATGAACAGCTACGGGCCCCTCGTCTTGGCGGC
TCTGATCTACATGTGGCTGACCTACGAGTGCTTCCAAAACCCTGTCTCAC
TGCAAGGGTTTGCGAGTGGCATCACTAATCTTGAAGGGTTAACAAAAGGT
TTTGGAGAAGAGGTATCGGTGGCGACAGCCTGGTCCCACTTTCTGGCAGA
GGATCTTTTCATCGGACGTTGGGTGTACTTGGATGGCCAGAGGAACAAAA
TCTTCACAAAGCACTCGCTGGTCTTGTGCTACTTGTTCGGCCCAGCTGGT
TTCTTGAGTCACTTGCTTACCCGCGGGGTGACGAGCGTGGTCAAGCCAGG
TGTCCGAGATATCATGCAACAACAGCCTGCCAAACCATCGCCGAAAACGT
CTCCTTCCGGGACACCTTCCTCGACACTTGGTAGAGAGGCTAAAGAGCTC
ATCACCAAAGCCACCCGGGAAGCAGAAGAAATACTCCAGCAAGCGCGATC
AACCGGAGCTGCGCAAGCTGCATCTTTGCTGGAGGAGGCGGAGACGGAGG
CCCTTCTGATATTGAAAGGAGCAGAGGTAGAGAAAGAAGCACTCCTGTTG
AGAGCGAACAAGACTGAGCCAAATACGGAGGCGGAGACTGGACCAGCAGG
CTCAGAGGCAAAGGTCGGATCAGAGGCAAAGGCTGGGTCAGAGGCAAAGG
CCGGATCAGAGGCAAAGGCTGGGTCAGAGGCAAAGACCGCGTCAGCAAAA
ATCGAGCCATAAGAGGCGGAGACGGAGGCCCTTCTGATATTGAAAGGAGC
AGAGGTAGAGAAAGAAGCACTCCTGTTGAGAGCGAACAAGACTGAGCCAA
ATACGGAGGCGGAGACTGGACCAGCAGGCTCAGAGGCAAAGGTCGGATCA
GAGGCAAAGGCTGGGTCAGAGGCAAAGGCCGGATCAGAGGCAAAGGCTGG
GTCAGAGGCAAAGACCGCGTCAGCAAAAATCGAGCCATAA
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