mRNA_E-fasciculatus_F_contig10033.49.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10033.49.1 vs. uniprot
Match: A0A6H5KLQ4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ4_9PHAE) HSP 1 Score: 438 bits (1126), Expect = 1.140e-141 Identity = 317/463 (68.47%), Postives = 329/463 (71.06%), Query Frame = 1 Query: 1 MSLLALRPSHRGVRLHTFEPEDRGYTSTPTKIGGHCLDHVRNGFTVHVIRQLRNKHSASVRSRSCGSXXXXXXXXXXXXXQQASSRDSG-GEHEAAAMEGRPAAAFSTTLDTSMGRFGGLSAGLVLRLGPADSLPHHHRLYPTLTEFPPDTLASGRDASDVFSCQQXXXXXXXXXXXXXXXAYGDPKWHAGESDEVDPPAALTIIAPRHGDGNRNASPPIAAAADDAREEELRAVPYRDMATTAATGHSGALMAILLSRLAAVNPGDGSSAGDTPTAXXXXXXXXXXGGPVGD-SGVGLGVAQPGSTTASIATHDKVLRRPPPADNAAR------GXXXXXXXXGSWAWKARVDPLPVSSRLKRYDFVRELGSGSHGTLLLVRKRPLSAAN-SGSGGALGANRNGHAAGAGGRSRGLNPGGGRISNSSSXXSGSSVQ-APGGNLRVLKESHFLPEAVNEARLL 1359
MSLLALRPSHRGVRLHTFEPEDRGYTSTPTKIGGHCLDHVRNGFTV I+QLRNK SASV + S GS QQASSRDSG GEHE AAMEGRPAAAFSTTLDTSMGRFGGLSAGLVLRLG AD P HRLYPTL EFPPDTLA RDAS FSCQ XXXXXXXXXXXXXXX KWHAGESDE +P DDAREE +RAVPYRDMATT A GHSGAL+AILLSRLAAVNPGDG + GDTP A GG V D S V LGVAQPGSTTA IAT D+V RRPP AD+AAR XXXXXXXX SWAWKARVDPLPVSSRLKRYDFVRELGSGSHGTLLLVRKRPLSAA SGSGGAL ++ S SG + P G+LRVLKESHFLPEAVNEARLL
Sbjct: 1 MSLLALRPSHRGVRLHTFEPEDRGYTSTPTKIGGHCLDHVRNGFTV--IQQLRNKSSASVLTCSSGSSRNGQG-------QQASSRDSGDGEHEPAAMEGRPAAAFSTTLDTSMGRFGGLSAGLVLRLGAADFAPPRHRLYPTLAEFPPDTLALRRDASGGFSCQXXXXXXXXXXXXXXXXXXXXXKWHAGESDEGEPXXXXXXXXXXXXXXXXXXXX------DDAREE-IRAVPYRDMATTVAAGHSGALVAILLSRLAAVNPGDGYT-GDTPAAAAAAA-----GGLVRDNSRVDLGVAQPGSTTALIAT-DEVPRRPP-ADSAAREHGXXXXXXXXXXXXXSWAWKARVDPLPVSSRLKRYDFVRELGSGSHGTLLLVRKRPLSAAAISGSGGALXXXXXXXXXXX--XXXXXXXXXXXLNYGSVGSSGGTCSFQPVGSLRVLKESHFLPEAVNEARLL 437
BLAST of mRNA_E-fasciculatus_F_contig10033.49.1 vs. uniprot
Match: D8LSH9_ECTSI (Protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH9_ECTSI) HSP 1 Score: 214 bits (546), Expect = 8.180e-59 Identity = 159/217 (73.27%), Postives = 164/217 (75.58%), Query Frame = 1 Query: 715 MATTAATGHSGALMAILLSRLAAVNPGDGSSAGDTPTAXXXXXXXXXXGGPVGD-SGVGLGVAQPGSTTASIATHDKVLRRPPPADNAARGXXXXXXXXGSWAWKARVDPLPVSSRLKRYDFVRELGSGSHGTLLLVRKRPLSAA-NSGSGGALGANRNGHAAGAGGRSRGLNPGGGRISNSSSXXSGSSVQAPGGNLRVLKESHFLPEAVNEARLL 1359
MATTAATGHSGALMAILLSRLAAVNPGD + GDTP A XXXXX GG D S VGLGVAQPGS TA IAT D+VLRRPP XXXXXXXX SWAWKARVD LPVSSRLKRYDFVRELGSGSHGTLLLVRKRPLSAA +SGSGG LGAN + HA RSRG G G S G+ PGGNLRVLKESHFLPEAVNEARLL
Sbjct: 1 MATTAATGHSGALMAILLSRLAAVNPGD-AYTGDTPAAAXXXXX----GGLARDNSSVGLGVAQPGSATALIAT-DEVLRRPPXXXXXXXXXXXXXXXXSSWAWKARVDSLPVSSRLKRYDFVRELGSGSHGTLLLVRKRPLSAAASSGSGGTLGANSS-HAGAGRRRSRGGTGGRGLTHGSIGSSGGTCSFQPGGNLRVLKESHFLPEAVNEARLL 210 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10033.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10033.49.1 >prot_E-fasciculatus_F_contig10033.49.1 ID=prot_E-fasciculatus_F_contig10033.49.1|Name=mRNA_E-fasciculatus_F_contig10033.49.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=528bp MSLLALRPSHRGVRLHTFEPEDRGYTSTPTKIGGHCLDHVRNGFTVHVIRback to top mRNA from alignment at E-fasciculatus_F_contig10033:3128..4711+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10033.49.1 ID=mRNA_E-fasciculatus_F_contig10033.49.1|Name=mRNA_E-fasciculatus_F_contig10033.49.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1584bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10033:3128..4711+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10033:3128..4711+ >mRNA_E-fasciculatus_F_contig10033.49.1 ID=mRNA_E-fasciculatus_F_contig10033.49.1|Name=mRNA_E-fasciculatus_F_contig10033.49.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3168bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10033:3128..4711+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |