mRNA_E-fasciculatus_F_contig10033.49.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10033.49.1
Unique NamemRNA_E-fasciculatus_F_contig10033.49.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10033.49.1 vs. uniprot
Match: A0A6H5KLQ4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ4_9PHAE)

HSP 1 Score: 438 bits (1126), Expect = 1.140e-141
Identity = 317/463 (68.47%), Postives = 329/463 (71.06%), Query Frame = 1 
Query:    1 MSLLALRPSHRGVRLHTFEPEDRGYTSTPTKIGGHCLDHVRNGFTVHVIRQLRNKHSASVRSRSCGSXXXXXXXXXXXXXQQASSRDSG-GEHEAAAMEGRPAAAFSTTLDTSMGRFGGLSAGLVLRLGPADSLPHHHRLYPTLTEFPPDTLASGRDASDVFSCQQXXXXXXXXXXXXXXXAYGDPKWHAGESDEVDPPAALTIIAPRHGDGNRNASPPIAAAADDAREEELRAVPYRDMATTAATGHSGALMAILLSRLAAVNPGDGSSAGDTPTAXXXXXXXXXXGGPVGD-SGVGLGVAQPGSTTASIATHDKVLRRPPPADNAAR------GXXXXXXXXGSWAWKARVDPLPVSSRLKRYDFVRELGSGSHGTLLLVRKRPLSAAN-SGSGGALGANRNGHAAGAGGRSRGLNPGGGRISNSSSXXSGSSVQ-APGGNLRVLKESHFLPEAVNEARLL 1359
            MSLLALRPSHRGVRLHTFEPEDRGYTSTPTKIGGHCLDHVRNGFTV  I+QLRNK SASV + S GS             QQASSRDSG GEHE AAMEGRPAAAFSTTLDTSMGRFGGLSAGLVLRLG AD  P  HRLYPTL EFPPDTLA  RDAS  FSCQ XXXXXXXXXXXXXXX     KWHAGESDE +P                          DDAREE +RAVPYRDMATT A GHSGAL+AILLSRLAAVNPGDG + GDTP A          GG V D S V LGVAQPGSTTA IAT D+V RRPP AD+AAR       XXXXXXXX SWAWKARVDPLPVSSRLKRYDFVRELGSGSHGTLLLVRKRPLSAA  SGSGGAL                        ++  S   SG +    P G+LRVLKESHFLPEAVNEARLL
Sbjct:    1 MSLLALRPSHRGVRLHTFEPEDRGYTSTPTKIGGHCLDHVRNGFTV--IQQLRNKSSASVLTCSSGSSRNGQG-------QQASSRDSGDGEHEPAAMEGRPAAAFSTTLDTSMGRFGGLSAGLVLRLGAADFAPPRHRLYPTLAEFPPDTLALRRDASGGFSCQXXXXXXXXXXXXXXXXXXXXXKWHAGESDEGEPXXXXXXXXXXXXXXXXXXXX------DDAREE-IRAVPYRDMATTVAAGHSGALVAILLSRLAAVNPGDGYT-GDTPAAAAAAA-----GGLVRDNSRVDLGVAQPGSTTALIAT-DEVPRRPP-ADSAAREHGXXXXXXXXXXXXXSWAWKARVDPLPVSSRLKRYDFVRELGSGSHGTLLLVRKRPLSAAAISGSGGALXXXXXXXXXXX--XXXXXXXXXXXLNYGSVGSSGGTCSFQPVGSLRVLKESHFLPEAVNEARLL 437
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BLAST of mRNA_E-fasciculatus_F_contig10033.49.1 vs. uniprot
Match: D8LSH9_ECTSI (Protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH9_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 8.180e-59
Identity = 159/217 (73.27%), Postives = 164/217 (75.58%), Query Frame = 1 
Query:  715 MATTAATGHSGALMAILLSRLAAVNPGDGSSAGDTPTAXXXXXXXXXXGGPVGD-SGVGLGVAQPGSTTASIATHDKVLRRPPPADNAARGXXXXXXXXGSWAWKARVDPLPVSSRLKRYDFVRELGSGSHGTLLLVRKRPLSAA-NSGSGGALGANRNGHAAGAGGRSRGLNPGGGRISNSSSXXSGSSVQAPGGNLRVLKESHFLPEAVNEARLL 1359
            MATTAATGHSGALMAILLSRLAAVNPGD +  GDTP A XXXXX    GG   D S VGLGVAQPGS TA IAT D+VLRRPP        XXXXXXXX SWAWKARVD LPVSSRLKRYDFVRELGSGSHGTLLLVRKRPLSAA +SGSGG LGAN + HA     RSRG   G G    S     G+    PGGNLRVLKESHFLPEAVNEARLL
Sbjct:    1 MATTAATGHSGALMAILLSRLAAVNPGD-AYTGDTPAAAXXXXX----GGLARDNSSVGLGVAQPGSATALIAT-DEVLRRPPXXXXXXXXXXXXXXXXSSWAWKARVDSLPVSSRLKRYDFVRELGSGSHGTLLLVRKRPLSAAASSGSGGTLGANSS-HAGAGRRRSRGGTGGRGLTHGSIGSSGGTCSFQPGGNLRVLKESHFLPEAVNEARLL 210
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10033.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLQ4_9PHAE1.140e-14168.47Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LSH9_ECTSI8.180e-5973.27Protein kinase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10033contigE-fasciculatus_F_contig10033:3128..4711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionprotein kinase
Ec32 orthologEc-09_001700.1
Exons1
Model size1584
Cds size1584
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.4785368-CDS-E-fasciculatus_F_contig10033:3127..47111622927505.4785368-CDS-E-fasciculatus_F_contig10033:3127..4711Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10033 3128..4711 +
1695995567.918911-CDS-E-fasciculatus_F_contig10033:3127..47111695995567.918911-CDS-E-fasciculatus_F_contig10033:3127..4711Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10033 3128..4711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10033.49.1prot_E-fasciculatus_F_contig10033.49.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10033 3128..4711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10033.49.1

>prot_E-fasciculatus_F_contig10033.49.1 ID=prot_E-fasciculatus_F_contig10033.49.1|Name=mRNA_E-fasciculatus_F_contig10033.49.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=528bp
MSLLALRPSHRGVRLHTFEPEDRGYTSTPTKIGGHCLDHVRNGFTVHVIR
QLRNKHSASVRSRSCGSSSSSSSSSRNGQGQQASSRDSGGEHEAAAMEGR
PAAAFSTTLDTSMGRFGGLSAGLVLRLGPADSLPHHHRLYPTLTEFPPDT
LASGRDASDVFSCQQQQQQQQQQQQQQQQQAYGDPKWHAGESDEVDPPAA
LTIIAPRHGDGNRNASPPIAAAADDAREEELRAVPYRDMATTAATGHSGA
LMAILLSRLAAVNPGDGSSAGDTPTAAAAAAAAAAAGGPVGDSGVGLGVA
QPGSTTASIATHDKVLRRPPPADNAARGRGGGGGSSGSWAWKARVDPLPV
SSRLKRYDFVRELGSGSHGTLLLVRKRPLSAANSGSGGALGANRNGHAAG
AGGRSRGLNPGGGRISNSSSSSSGSSVQAPGGNLRVLKESHFLPEAVNEA
RLLLLAGGGGGAGGGGAPYAAGSGFGSERRVAGGGGSAGGPETYGGIVDT
GDDVVVSATAVGGGGAREGRQRGEVVQV
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mRNA from alignment at E-fasciculatus_F_contig10033:3128..4711+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10033.49.1 ID=mRNA_E-fasciculatus_F_contig10033.49.1|Name=mRNA_E-fasciculatus_F_contig10033.49.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1584bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10033:3128..4711+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTTTGTTGGCACTGCGCCCAAGCCATCGGGGCGTGCGGCTGCACAC
CTTCGAGCCTGAGGACCGGGGGTACACCTCCACGCCGACTAAAATCGGAG
GCCACTGTCTCGACCACGTGCGGAATGGATTCACCGTGCACGTGATACGG
CAACTCAGGAACAAACATTCGGCGTCCGTGCGAAGCCGCAGCTGCGGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGGAACGGGCAAGGCCAGCAGGCCA
GCAGCAGAGACAGCGGCGGAGAGCATGAGGCAGCAGCGATGGAAGGGAGG
CCCGCGGCGGCGTTTTCGACTACCCTTGATACCAGCATGGGAAGGTTTGG
TGGCCTCTCTGCCGGGTTGGTGCTAAGGCTGGGCCCTGCCGACTCCTTGC
CACACCACCACCGGCTGTACCCGACGCTCACAGAGTTCCCGCCGGATACG
CTGGCATCGGGGAGGGACGCAAGCGATGTTTTCTCCTGCCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCTTATGGTG
ATCCCAAATGGCACGCCGGCGAAAGCGACGAAGTTGACCCGCCGGCTGCT
TTGACTATTATTGCGCCGCGCCACGGCGACGGCAACAGGAATGCCAGCCC
TCCCATAGCAGCGGCGGCGGACGATGCGAGAGAAGAAGAGCTCAGAGCGG
TGCCCTACCGCGACATGGCAACGACCGCCGCAACAGGACACAGCGGCGCC
CTCATGGCGATCCTGCTGTCCAGGCTCGCCGCCGTCAACCCCGGTGATGG
GTCGTCCGCGGGTGACACGCCGACCGCCGCCGCCGCCGCCGCTGCTGCTG
CTGCTGCCGGTGGTCCCGTTGGAGACAGCGGTGTTGGCCTTGGCGTGGCA
CAGCCAGGGTCGACGACAGCCTCGATCGCAACCCACGACAAGGTGCTCCG
CCGGCCGCCGCCTGCCGATAACGCCGCTCGCGGGCGCGGCGGCGGCGGCG
GCAGCAGCGGCAGCTGGGCGTGGAAGGCGCGGGTCGACCCCCTGCCGGTC
TCCTCCAGGCTCAAGAGGTACGACTTCGTGCGCGAGCTGGGCAGCGGCAG
CCACGGCACCCTCCTTCTCGTTCGGAAACGGCCCCTCTCTGCCGCCAACA
GCGGTAGCGGCGGTGCTCTCGGCGCCAACAGAAACGGCCACGCCGCCGGT
GCTGGCGGGAGGAGTAGAGGTCTCAACCCCGGTGGTGGTAGAATCAGCAA
CAGCAGCAGCAGCAGCAGCGGTAGTAGCGTTCAAGCGCCAGGAGGAAACC
TGCGGGTGCTGAAGGAGAGCCATTTTTTGCCGGAGGCAGTTAACGAAGCA
CGGTTGCTGTTGCTTGCTGGCGGAGGAGGAGGAGCAGGAGGAGGAGGAGC
CCCTTACGCTGCTGGCAGTGGGTTTGGCTCGGAGCGACGGGTGGCCGGCG
GTGGTGGTAGTGCGGGAGGTCCCGAGACCTATGGCGGTATTGTTGACACG
GGTGACGACGTCGTGGTGAGCGCCACCGCAGTCGGGGGCGGTGGAGCGAG
GGAAGGCCGTCAACGGGGGGAGGTGGTGCAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10033:3128..4711+

>mRNA_E-fasciculatus_F_contig10033.49.1 ID=mRNA_E-fasciculatus_F_contig10033.49.1|Name=mRNA_E-fasciculatus_F_contig10033.49.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3168bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10033:3128..4711+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTTTGTTGGCACTGCGCCCAAGCCATCGGGGCGTGCGGCTGCACAC
CTTCGAGCCTGAGGACCGGGGGTACACCTCCACGCCGACTAAAATCGGAG
GCCACTGTCTCGACCACGTGCGGAATGGATTCACCGTGCACGTGATACGG
CAACTCAGGAACAAACATTCGGCGTCCGTGCGAAGCCGCAGCTGCGGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGGAACGGGCAAGGCCAGCAGGCCA
GCAGCAGAGACAGCGGCGGAGAGCATGAGGCAGCAGCGATGGAAGGGAGG
CCCGCGGCGGCGTTTTCGACTACCCTTGATACCAGCATGGGAAGGTTTGG
TGGCCTCTCTGCCGGGTTGGTGCTAAGGCTGGGCCCTGCCGACTCCTTGC
CACACCACCACCGGCTGTACCCGACGCTCACAGAGTTCCCGCCGGATACG
CTGGCATCGGGGAGGGACGCAAGCGATGTTTTCTCCTGCCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCTTATGGTG
ATCCCAAATGGCACGCCGGCGAAAGCGACGAAGTTGACCCGCCGGCTGCT
TTGACTATTATTGCGCCGCGCCACGGCGACGGCAACAGGAATGCCAGCCC
TCCCATAGCAGCGGCGGCGGACGATGCGAGAGAAGAAGAGCTCAGAGCGG
TGCCCTACCGCGACATGGCAACGACCGCCGCAACAGGACACAGCGGCGCC
CTCATGGCGATCCTGCTGTCCAGGCTCGCCGCCGTCAACCCCGGTGATGG
GTCGTCCGCGGGTGACACGCCGACCGCCGCCGCCGCCGCCGCTGCTGCTG
CTGCTGCCGGTGGTCCCGTTGGAGACAGCGGTGTTGGCCTTGGCGTGGCA
CAGCCAGGGTCGACGACAGCCTCGATCGCAACCCACGACAAGGTGCTCCG
CCGGCCGCCGCCTGCCGATAACGCCGCTCGCGGGCGCGGCGGCGGCGGCG
GCAGCAGCGGCAGCTGGGCGTGGAAGGCGCGGGTCGACCCCCTGCCGGTC
TCCTCCAGGCTCAAGAGGTACGACTTCGTGCGCGAGCTGGGCAGCGGCAG
CCACGGCACCCTCCTTCTCGTTCGGAAACGGCCCCTCTCTGCCGCCAACA
GCGGTAGCGGCGGTGCTCTCGGCGCCAACAGAAACGGCCACGCCGCCGGT
GCTGGCGGGAGGAGTAGAGGTCTCAACCCCGGTGGTGGTAGAATCAGCAA
CAGCAGCAGCAGCAGCAGCGGTAGTAGCGTTCAAGCGCCAGGAGGAAACC
TGCGGGTGCTGAAGGAGAGCCATTTTTTGCCGGAGGCAGTTAACGAAGCA
CGGTTGCTGTTGCTTGCTGGCGGAGGAGGAGGAGCAGGAGGAGGAGGAGC
CCCTTACGCTGCTGGCAGTGGGTTTGGCTCGGAGCGACGGGTGGCCGGCG
GTGGTGGTAGTGCGGGAGGTCCCGAGACCTATGGCGGTATTGTTGACACG
GGTGACGACGTCGTGGTGAGCGCCACCGCAGTCGGGGGCGGTGGAGCGAG
GGAAGGCCGTCAACGGGGGGAGGTGGTGCAGGTGATGTCTTTGTTGGCAC
TGCGCCCAAGCCATCGGGGCGTGCGGCTGCACACCTTCGAGCCTGAGGAC
CGGGGGTACACCTCCACGCCGACTAAAATCGGAGGCCACTGTCTCGACCA
CGTGCGGAATGGATTCACCGTGCACGTGATACGGCAACTCAGGAACAAAC
ATTCGGCGTCCGTGCGAAGCCGCAGCTGCGGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGGAACGGGCAAGGCCAGCAGGCCAGCAGCAGAGACAGCGG
CGGAGAGCATGAGGCAGCAGCGATGGAAGGGAGGCCCGCGGCGGCGTTTT
CGACTACCCTTGATACCAGCATGGGAAGGTTTGGTGGCCTCTCTGCCGGG
TTGGTGCTAAGGCTGGGCCCTGCCGACTCCTTGCCACACCACCACCGGCT
GTACCCGACGCTCACAGAGTTCCCGCCGGATACGCTGGCATCGGGGAGGG
ACGCAAGCGATGTTTTCTCCTGCCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGGCTTATGGTGATCCCAAATGGCACGC
CGGCGAAAGCGACGAAGTTGACCCGCCGGCTGCTTTGACTATTATTGCGC
CGCGCCACGGCGACGGCAACAGGAATGCCAGCCCTCCCATAGCAGCGGCG
GCGGACGATGCGAGAGAAGAAGAGCTCAGAGCGGTGCCCTACCGCGACAT
GGCAACGACCGCCGCAACAGGACACAGCGGCGCCCTCATGGCGATCCTGC
TGTCCAGGCTCGCCGCCGTCAACCCCGGTGATGGGTCGTCCGCGGGTGAC
ACGCCGACCGCCGCCGCCGCCGCCGCTGCTGCTGCTGCTGCCGGTGGTCC
CGTTGGAGACAGCGGTGTTGGCCTTGGCGTGGCACAGCCAGGGTCGACGA
CAGCCTCGATCGCAACCCACGACAAGGTGCTCCGCCGGCCGCCGCCTGCC
GATAACGCCGCTCGCGGGCGCGGCGGCGGCGGCGGCAGCAGCGGCAGCTG
GGCGTGGAAGGCGCGGGTCGACCCCCTGCCGGTCTCCTCCAGGCTCAAGA
GGTACGACTTCGTGCGCGAGCTGGGCAGCGGCAGCCACGGCACCCTCCTT
CTCGTTCGGAAACGGCCCCTCTCTGCCGCCAACAGCGGTAGCGGCGGTGC
TCTCGGCGCCAACAGAAACGGCCACGCCGCCGGTGCTGGCGGGAGGAGTA
GAGGTCTCAACCCCGGTGGTGGTAGAATCAGCAACAGCAGCAGCAGCAGC
AGCGGTAGTAGCGTTCAAGCGCCAGGAGGAAACCTGCGGGTGCTGAAGGA
GAGCCATTTTTTGCCGGAGGCAGTTAACGAAGCACGGTTGCTGTTGCTTG
CTGGCGGAGGAGGAGGAGCAGGAGGAGGAGGAGCCCCTTACGCTGCTGGC
AGTGGGTTTGGCTCGGAGCGACGGGTGGCCGGCGGTGGTGGTAGTGCGGG
AGGTCCCGAGACCTATGGCGGTATTGTTGACACGGGTGACGACGTCGTGG
TGAGCGCCACCGCAGTCGGGGGCGGTGGAGCGAGGGAAGGCCGTCAACGG
GGGGAGGTGGTGCAGGTG
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