mRNA_E-fasciculatus_F_contig10032.47.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10032.47.1
Unique NamemRNA_E-fasciculatus_F_contig10032.47.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10032.47.1 vs. uniprot
Match: A0A6H5L316_9PHAE (SHSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L316_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.100e-45
Identity = 85/93 (91.40%), Postives = 90/93 (96.77%), Query Frame = 1 
Query:    1 PAVMQETDDLYTLAFDLPAGVDHDGLEVSISGRLLTVKASITREQEADPFTSRGGWVTRSSRVDSVSRSFVLPEGLVESSATASLAEGKAEVR 279
            PAV+ ET+DLYTLAFDLPAGVDHDGLEVS+S RLLTVKASITREQEADPF +RGGWVTRSSRVDSVSRSFVLPEGLVESSATASL+EGKAEVR
Sbjct:  122 PAVILETNDLYTLAFDLPAGVDHDGLEVSVSDRLLTVKASITREQEADPFITRGGWVTRSSRVDSVSRSFVLPEGLVESSATASLSEGKAEVR 214
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BLAST of mRNA_E-fasciculatus_F_contig10032.47.1 vs. uniprot
Match: D8LP10_ECTSI (SHSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP10_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 6.170e-45
Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:    1 PAVMQETDDLYTLAFDLPAGVDHDGLEVSISGRLLTVKASITREQEADPFTSRGGWVTRSSRVDSVSRSFVLPEGLVESSATASLAEGKAEVR 279
            P ++ ETDDLY LAFDLPAGVDHDGL+VS+S RLLTVKASITREQEADPFT+RGGWVTRSSRVDSVSRSFVLPEGLVESSATASLAE KAEVR
Sbjct:  118 PVIILETDDLYALAFDLPAGVDHDGLDVSVSDRLLTVKASITREQEADPFTTRGGWVTRSSRVDSVSRSFVLPEGLVESSATASLAESKAEVR 210
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BLAST of mRNA_E-fasciculatus_F_contig10032.47.1 vs. uniprot
Match: D7FTP7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP7_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 7.480e-9
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:   10 MQETDDLYTLAFDLPAGVDHDGLEVSISGRLLTVKASITREQEADPFT------SRG--GWV-TR-SSRVDSVSRSFVLPEGL 228
            ++ETD  Y L F+LP+G+   GLEVS+SGRLLTV+A  TRE+  D  +      S G  GWV TR +++ ++ +RSF LP+ +
Sbjct:  111 VRETDAGYALTFNLPSGISDTGLEVSVSGRLLTVEARTTREENHDVISKSADKGSEGSKGWVMTRCTTKTNAAARSFTLPDSV 193
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BLAST of mRNA_E-fasciculatus_F_contig10032.47.1 vs. uniprot
Match: E4NTY4_HALBP (Heat shock protein Hsp20 n=2 Tax=Halogeometricum borinquense TaxID=60847 RepID=E4NTY4_HALBP)

HSP 1 Score: 53.9 bits (128), Expect = 5.660e-7
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:   10 MQETDDLYTLAFDLPAGVDHDGLEVSISGRLLTVKASITREQEADPFTSRGGWVTRSSRVDSVSRSFVLPEGLVESSATASLAEG 264
            + ETDD +T+  DLP G + D +E+S SGR LT++A    EQ A+   S   +V R  R  +V RS  LP+ +VE  A+A+   G
Sbjct:   36 VSETDDEFTVVADLP-GYEKDDIEISASGRELTIRA----EQTAETEESGDRYVRRERRQSNVRRSLTLPQEVVEEEASATYKNG 115
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10032.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L316_9PHAE1.100e-4591.40SHSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LP10_ECTSI6.170e-4589.25SHSP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FTP7_ECTSI7.480e-945.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
E4NTY4_HALBP5.660e-741.18Heat shock protein Hsp20 n=2 Tax=Halogeometricum b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10032contigE-fasciculatus_F_contig10032:4438..4728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-06_007020.1
Exons1
Model size291
Cds size282
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.3569603-UTR-E-fasciculatus_F_contig10032:4437..44461622927505.3569603-UTR-E-fasciculatus_F_contig10032:4437..4446Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10032 4438..4446 +
1695995567.8562744-UTR-E-fasciculatus_F_contig10032:4437..44461695995567.8562744-UTR-E-fasciculatus_F_contig10032:4437..4446Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10032 4438..4446 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927505.3673794-CDS-E-fasciculatus_F_contig10032:4446..47281622927505.3673794-CDS-E-fasciculatus_F_contig10032:4446..4728Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10032 4447..4728 +
1695995567.8672473-CDS-E-fasciculatus_F_contig10032:4446..47281695995567.8672473-CDS-E-fasciculatus_F_contig10032:4446..4728Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10032 4447..4728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10032.47.1prot_E-fasciculatus_F_contig10032.47.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10032 4447..4728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10032.47.1

>prot_E-fasciculatus_F_contig10032.47.1 ID=prot_E-fasciculatus_F_contig10032.47.1|Name=mRNA_E-fasciculatus_F_contig10032.47.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=94bp
MQETDDLYTLAFDLPAGVDHDGLEVSISGRLLTVKASITREQEADPFTSR
GGWVTRSSRVDSVSRSFVLPEGLVESSATASLAEGKAEVRPVKA
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mRNA from alignment at E-fasciculatus_F_contig10032:4438..4728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10032.47.1 ID=mRNA_E-fasciculatus_F_contig10032.47.1|Name=mRNA_E-fasciculatus_F_contig10032.47.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=291bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10032:4438..4728+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGCGGTTATGCAGGAGACCGACGACCTCTACACTCTGGCCTTTGACCT
TCCGGCAGGGGTCGACCACGACGGACTGGAAGTGTCCATCAGCGGTCGTC
TGCTGACGGTCAAGGCCAGCATCACCCGTGAACAGGAGGCCGACCCCTTC
ACCAGCAGAGGTGGATGGGTCACGCGCTCCAGCAGGGTAGACTCTGTGTC
TCGCTCGTTCGTGCTTCCGGAGGGTCTTGTAGAGTCTAGCGCGACTGCTT
CGCTCGCAGAGGGCAAGGCTGAGGTAAGGCCCGTCAAAGCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10032:4438..4728+

>mRNA_E-fasciculatus_F_contig10032.47.1 ID=mRNA_E-fasciculatus_F_contig10032.47.1|Name=mRNA_E-fasciculatus_F_contig10032.47.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10032:4438..4728+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGGAGACCGACGACCTCTACACTCTGGCCTTTGACCTTCCGGCAGG
GGTCGACCACGACGGACTGGAAGTGTCCATCAGCGGTCGTCTGCTGACGG
TCAAGGCCAGCATCACCCGTGAACAGGAGGCCGACCCCTTCACCAGCAGA
GGTGGATGGGTCACGCGCTCCAGCAGGGTAGACTCTGTGTCTCGCTCGTT
CGTGCTTCCGGAGGGTCTTGTAGAGTCTAGCGCGACTGCTTCGCTCGCAG
AGGGCAAGGCTGAGGTAAGGCCCGTCAAAGCTATGCAGGAGACCGACGAC
CTCTACACTCTGGCCTTTGACCTTCCGGCAGGGGTCGACCACGACGGACT
GGAAGTGTCCATCAGCGGTCGTCTGCTGACGGTCAAGGCCAGCATCACCC
GTGAACAGGAGGCCGACCCCTTCACCAGCAGAGGTGGATGGGTCACGCGC
TCCAGCAGGGTAGACTCTGTGTCTCGCTCGTTCGTGCTTCCGGAGGGTCT
TGTAGAGTCTAGCGCGACTGCTTCGCTCGCAGAGGGCAAGGCTGAGGTAA
GGCCCGTCAAAGCT
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