mRNA_E-fasciculatus_F_contig16163.4205.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16163.4205.1
Unique NamemRNA_E-fasciculatus_F_contig16163.4205.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16163.4205.1 vs. uniprot
Match: D8LMZ2_ECTSI (COG2350: Uncharacterized protein conserved in bacteria n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ2_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 9.230e-118
Identity = 168/181 (92.82%), Postives = 174/181 (96.13%), Query Frame = 1 
Query:    1 SRIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKARALRLLEEDPYRKNGLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKGKAKLREKNNDAHEEYYERTRRCIGEGPILSSDLAEDSPKNKPVGSLMFFNAINDEEARETAEGDPFNQAGVYDSVFVARCVELYL 543
            +RIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTK  ALRLLEEDPYRK+GLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKG AKLREKNNDAH EYYERTRRCIGEGP+LSSDLAEDSP+NKPVGSLMFFNAINDEEARETAEGDPFNQAG+YDSVFVAR  E+ L
Sbjct:  217 ARIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKEGALRLLEEDPYRKSGLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKGSAKLREKNNDAHLEYYERTRRCIGEGPVLSSDLAEDSPRNKPVGSLMFFNAINDEEARETAEGDPFNQAGLYDSVFVARFNEIDL 397
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BLAST of mRNA_E-fasciculatus_F_contig16163.4205.1 vs. uniprot
Match: A0A6H5JNB6_9PHAE (YCII domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB6_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 4.420e-112
Identity = 170/208 (81.73%), Postives = 176/208 (84.62%), Query Frame = 1 
Query:    1 SRIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKARA--------------------------LRLLEEDPYRKNGLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKGKAKLREKNNDAHEEYYERTRR-CIGEGPILSSDLAEDSPKNKPVGSLMFFNAINDEEARETAEGDPFNQAGVYDSVFVARCVELYL 543
            +RIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKA A                          LRLLEEDPYRK+GLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKGKAKLREKNNDAH EYYE+TRR CIGEGPILSSDLAEDSP+NKPVGSLMFFNAINDEEARETAEGDPFNQAG+YDSVFVAR  E+ L
Sbjct:  101 ARIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKASAIHLGYFYVLLRKIGSDEAVAGRKEGALRLLEEDPYRKSGLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKGKAKLREKNNDAHLEYYEKTRRRCIGEGPILSSDLAEDSPRNKPVGSLMFFNAINDEEARETAEGDPFNQAGLYDSVFVARFNEIDL 308
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BLAST of mRNA_E-fasciculatus_F_contig16163.4205.1 vs. uniprot
Match: A0A7S0EWI6_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EWI6_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 4.310e-9
Identity = 46/155 (29.68%), Postives = 72/155 (46.45%), Query Frame = 1 
Query:   79 PSKCRVIGNMFCIRSYTKARALRLLEEDPYRKNGLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKGKAKLREKNNDAHEEYYERTRRCIGEGPILSSDLAEDSPKNKPVGSLMFFNAINDEEARETAEGDPFNQAGVYDSVFVARCVELYL 543
            P    V+GN+  ++  + A      + DP+   G + +++ +R+  +     N       Y   C+DK   ++LRE   DAH  +     R +  G  L S L E       VG+L+F N    EE R  A  DP+NQAG+++SV VA   +  L
Sbjct:  191 PQGSFVLGNLNVVKGSSLADVAAWGQGDPHDVVGAYASLTTHRWLRSPDPELNLPAPGPCYGVYCLDKPASSELREATRDAHLAWLAEGGR-VHLGGALQSPLGEAVGN---VGTLLFVNGDELEEVRRWATEDPYNQAGLFESVLVAPVTQYAL 341
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BLAST of mRNA_E-fasciculatus_F_contig16163.4205.1 vs. uniprot
Match: A0A840CDM8_9RHOB (YCII domain-containing protein n=2 Tax=Actibacterium TaxID=1433986 RepID=A0A840CDM8_9RHOB)

HSP 1 Score: 52.0 bits (123), Expect = 1.090e-5
Identity = 31/87 (35.63%), Postives = 44/87 (50.57%), Query Frame = 1 
Query:  259 YLALCMDKKGKAKLREKNNDAHEEYYERTRRCIGEGPILSSDLAEDSPKNKPVGSLMFFNAINDEEARETAEGDPFNQAGVYDSVFV 519
            +  +C DK G  + R+ N DAH  Y + T      GP L  D A D       GSL+        +A+  AEGDP+ QAG+++SV +
Sbjct:    4 FAVICKDKPGHLETRKANRDAHLSYLKETGVVTQAGPFL--DEAGDM-----CGSLLILEVGALSDAQAWAEGDPYAQAGLFESVAI 83
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BLAST of mRNA_E-fasciculatus_F_contig16163.4205.1 vs. uniprot
Match: A0A1Z9TJS9_9RICK (YCII domain-containing protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1Z9TJS9_9RICK)

HSP 1 Score: 50.4 bits (119), Expect = 4.020e-5
Identity = 31/93 (33.33%), Postives = 47/93 (50.54%), Query Frame = 1 
Query:  259 YLALCMDKKGKAKLREKNNDAHEEYYERTRRCIGEGPILSSDLAEDSPKNKPVGSLMFFNAINDEEARETAEGDPFNQAGVYDSVFVARCVEL 537
            +  +C+D +   + R  N +AH EY   T      GP LS    ED      +GSL+   A N EEA   ++ DP+N+AG++ SV + +   L
Sbjct:    3 FSVICLDNEKSLEKRLSNXEAHLEYVXGTGVVRYAGPFLSD---EDETM---MGSLIVIEAENKEEALNWSKNDPYNKAGLFQSVKIYKFKHL 89
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16163.4205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LMZ2_ECTSI9.230e-11892.82COG2350: Uncharacterized protein conserved in bact... [more]
A0A6H5JNB6_9PHAE4.420e-11281.73YCII domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S0EWI6_9EUKA4.310e-929.68Hypothetical protein n=2 Tax=Phaeocystis antarctic... [more]
A0A840CDM8_9RHOB1.090e-535.63YCII domain-containing protein n=2 Tax=Actibacteri... [more]
A0A1Z9TJS9_9RICK4.020e-533.33YCII domain-containing protein n=2 Tax=Alphaproteo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16163contigE-fasciculatus_F_contig16163:101..2507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score355.5
Seed ortholog evalue1.5e-95
Seed eggNOG ortholog2880.D8LMZ2
EggNOG OGs2E392@1,2SAD8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionYCII-related
Ec32 orthologEc-16_001160.1
Exons3
Model size567
Cds size567
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16163.4205.1prot_E-fasciculatus_F_contig16163.4205.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16163 101..2507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928081.111646-CDS-E-fasciculatus_F_contig16163:100..3201622928081.111646-CDS-E-fasciculatus_F_contig16163:100..320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16163 101..320 -
1695995815.8417566-CDS-E-fasciculatus_F_contig16163:100..3201695995815.8417566-CDS-E-fasciculatus_F_contig16163:100..320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16163 101..320 -
1622928081.1280594-CDS-E-fasciculatus_F_contig16163:1265..14761622928081.1280594-CDS-E-fasciculatus_F_contig16163:1265..1476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16163 1266..1476 -
1695995815.8520205-CDS-E-fasciculatus_F_contig16163:1265..14761695995815.8520205-CDS-E-fasciculatus_F_contig16163:1265..1476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16163 1266..1476 -
1622928081.1424453-CDS-E-fasciculatus_F_contig16163:2371..25071622928081.1424453-CDS-E-fasciculatus_F_contig16163:2371..2507Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16163 2372..2507 -
1695995815.861815-CDS-E-fasciculatus_F_contig16163:2371..25071695995815.861815-CDS-E-fasciculatus_F_contig16163:2371..2507Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16163 2372..2507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16163.4205.1

>prot_E-fasciculatus_F_contig16163.4205.1 ID=prot_E-fasciculatus_F_contig16163.4205.1|Name=mRNA_E-fasciculatus_F_contig16163.4205.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=189bp
SRIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKARALRL
LEEDPYRKNGLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKGKAKL
REKNNDAHEEYYERTRRCIGEGPILSSDLAEDSPKNKPVGSLMFFNAIND
EEARETAEGDPFNQAGVYDSVFVARCVELYLWCCLVAP*
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mRNA from alignment at E-fasciculatus_F_contig16163:101..2507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16163.4205.1 ID=mRNA_E-fasciculatus_F_contig16163.4205.1|Name=mRNA_E-fasciculatus_F_contig16163.4205.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2407bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16163:101..2507- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAGGATAGCAAAGCGCACGTTCGAGGACGATCCGGACCGGGAGGCTGG
TATCTTGTGGAACCGTAGCGTGTTGTCTCCGTCCAAGTGCCGGGTAATCG
GGAACATGTTCTGCATCCGATCCTACACCAAGGCAAGTATCCACTCCCGT
CATTTTTTCGTTTTGTCAAAATCGGAAGCGATTAGCCTATTGCGCGAGCT
TGCCTAGGTGGGCCGTAGGTGGGCGAATCTTCCTTTGTTGTTATGATAAT
AAAATTCATTAGGAAGGCGCCTTTCTGTTTAAAGGAACGTGTGTTTCTCG
ATTGTGATTGGCGTGCTGTTCGAGAGCCGTTGTCGGGGTTACGTACGTGT
GTTTGTCCGCTCTTACTTTTTGCAAAGATGGCACATTTTCTTCTGGTGCT
GTATTGATTGTCTCCGACAGTGCTTTTGTTTATTCCGTTTGTTTGCTTTT
CACGAAAACAAAAAACTTGCAAAAAATATCAGTTTTTGGCGTCCATCACA
CGGCAAGTAAACCGTTTCACACGAAGGATAGCGTTTTTTTCTGTTAATCG
GCGTCGAGAGGTCACTCACCAACACATCCATGCACATGCACACACCTGGC
TGGAGGCCGATATCCCTAAGAACACAGGCGTCGAACGTTATTCCTCGCAT
CAACCGAAACGAAGATTTAGTAGCGGTTGCGCGCTGGGACCACAAACGGC
ACCCCCATAGATAGAAAACGTGTTTGGTTCGTAGAAAGAGAGCCTAGAAT
TTCAGCTACCCCCCGTCATCCCTCGTTCCCTATGAAAGCAAACAATCACT
CCCCTCCCTATTAGCCAGGAAAACACGATAGCTATACTGGGGTTAGGGAG
TGGGCTGAAAACGTGGGAATTGATATCGATCGGATAGGGGTTATGTTTGT
GAGAGCCACATTTGGGCAAAATGCTCTGTCCCTCGAGGACGCGTGGTCAA
TGGTCCGAACAGTTAAGGGGTGCAAAACATGAAACGTACGCCCCCCTCGT
AACCCTGCCTCCGCACGACCCGAACAGGAAGGGGCATTGCGTCTGTTGGA
GGAGGACCCGTACCGGAAGAACGGGCTATTCGGGACGGTTTCGCTGTACC
GCTACCCGTACAACATGGGCGGCGGGTTCAACTGGCACTTGTCCAACTTT
CCCTACCTGGCGCTGTGCATGGACAAGAAGGGGAAGGCCAAGCTCAGGGA
GAAGAACAACGACGCGCACGAGGAGTACTACGAGAGGACCAGGTACACCC
GCGAAATGTTTACATTGGCCGCGAAAGCCGAGGTTCTGCCGCGTGCCACA
CAAGATGCCACGCCCCCTTTTTGGGCCGATTTCGAATTCTGGATTTGATC
ATAGCGTCCAATGCCTAAGGATGATATTTACTGGAAATATGGAGCCCTCA
AATCTGGGTGAGCGGAGAGTCCGGAGTGTGGTGGCTAAGACCTGCCACAG
GAGGTTGGCTGTTTCCTTTGGTGCGATGTGGCGAGGAATGCTAAGCGCGA
CCGATCGAACTCAGTCAAGCTACAGTAGGGCGGTCTGGAGAGTGGGCGAG
CCTTCATGGACTCATTTTTCCAGCCTCCCAAAGATTCATCAACCATTCGC
AGCTGTTGGGAATCAGAGAGTAACGAGCCCTTGGGAAGAACCATGATATA
TTATCGCAGATTCCTCTGATCCTGCTCTTTGTGTTTTATGTCTGTGCTTC
CTGAATCCTCATGTCCTGATCTCAACAGAAAGGTATAACTATTCACCTTC
GAAAGGCTGGATTGTTCATAGCAAGAGCGTAATGTCTAAATGGACATACT
CGAAAGTTATCGGTCGGTGTTGTCATAGATGTGGAGAAACCGAGCTGCGA
ACACCTGTGCAGGAGATGTGGTATACTGTGCGGCATACGGGAGACATTTG
TGCTGTAGATGGGGCAGGAAGGGCGGGCATCGCATCGCGTCCACACACGG
TGCTGCGGTCTTGTGTCTGTCATGATAAAAAATCTCAGTATTCGTCCTAG
ATATGCGCCAGTATACATCAACCGAGCCCGATCCTCCGGTACAATAGTTG
TCCCTGTATACCGGCGTATACCACAACGAACAAAAACGTTGTTATTGTTT
GATCTGCGAGCGATACTTCGATCCCTTTGTCTGAACGTTTCCCCCCGTAC
ACGGCTGCCGCCGCCGCCGCTGCTGGTGCTGCTGTAGACGATGCATCGGC
GAGGGGCCAATCCTAAGCTCCGACTTGGCCGAGGACAGCCCCAAGAATAA
ACCGGTGGGCTCCCTCATGTTTTTCAACGCCATCAACGACGAGGAGGCGA
GAGAGACGGCGGAGGGGGACCCTTTCAACCAAGCGGGCGTGTACGACAGC
GTGTTCGTTGCCAGGTGTGTGGAGTTATATCTGTGGTGTTGTCTGGTGGC
GCCGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16163:101..2507-

>mRNA_E-fasciculatus_F_contig16163.4205.1 ID=mRNA_E-fasciculatus_F_contig16163.4205.1|Name=mRNA_E-fasciculatus_F_contig16163.4205.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1134bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16163:101..2507- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAGGATAGCAAAGCGCACGTTCGAGGACGATCCGGACCGGGAGGCTGG
TATCTTGTGGAACCGTAGCGTGTTGTCTCCGTCCAAGTGCCGGGTAATCG
GGAACATGTTCTGCATCCGATCCTACACCAAGGCAAAGCAGGATAGCAAA
GCGCACGTTCGAGGACGATCCGGACCGGGAGGCTGGTATCTTGTGGAACC
GTAGCGTGTTGTCTCCGTCCAAGTGCCGGGTAATCGGGAACATGTTCTGC
ATCCGATCCTACACCAAGGCAAGGGCATTGCGTCTGTTGGAGGAGGACCC
GTACCGGAAGAACGGGCTATTCGGGACGGTTTCGCTGTACCGCTACCCGT
ACAACATGGGCGGCGGGTTCAACTGGCACTTGTCCAACTTTCCCTACCTG
GCGCTGTGCATGGACAAGAAGGGGAAGGCCAAGCTCAGGGAGAAGAACAA
CGACGCGCACGAGGAGTACTACGAGAGGACCAGGGGCATTGCGTCTGTTG
GAGGAGGACCCGTACCGGAAGAACGGGCTATTCGGGACGGTTTCGCTGTA
CCGCTACCCGTACAACATGGGCGGCGGGTTCAACTGGCACTTGTCCAACT
TTCCCTACCTGGCGCTGTGCATGGACAAGAAGGGGAAGGCCAAGCTCAGG
GAGAAGAACAACGACGCGCACGAGGAGTACTACGAGAGGACCAGACGATG
CATCGGCGAGGGGCCAATCCTAAGCTCCGACTTGGCCGAGGACAGCCCCA
AGAATAAACCGGTGGGCTCCCTCATGTTTTTCAACGCCATCAACGACGAG
GAGGCGAGAGAGACGGCGGAGGGGGACCCTTTCAACCAAGCGGGCGTGTA
CGACAGCGTGTTCGTTGCCAGGTGTGTGGAGTTATATCTGTGGTGTTGTC
TGGTGGCGCCGTGAACGATGCATCGGCGAGGGGCCAATCCTAAGCTCCGA
CTTGGCCGAGGACAGCCCCAAGAATAAACCGGTGGGCTCCCTCATGTTTT
TCAACGCCATCAACGACGAGGAGGCGAGAGAGACGGCGGAGGGGGACCCT
TTCAACCAAGCGGGCGTGTACGACAGCGTGTTCGTTGCCAGGTGTGTGGA
GTTATATCTGTGGTGTTGTCTGGTGGCGCCGTGA
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