mRNA_E-fasciculatus_F_contig1616.4202.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1616.4202.1
Unique NamemRNA_E-fasciculatus_F_contig1616.4202.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1616.4202.1 vs. uniprot
Match: D8LQ52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ52_ECTSI)

HSP 1 Score: 515 bits (1327), Expect = 3.390e-180
Identity = 252/293 (86.01%), Postives = 269/293 (91.81%), Query Frame = 1 
Query:    1 MSCTRQQEDGHDSTRGMRTTVPKDCCAAHPPCSSTPVPSNSNAPHRRVRSMAETLEDRNLPPNQPTLTFRVTGASSVARLEPLLLDQGGRNQRPTIWLRSLDSCDDGARIDFVWETTVTKQQQQRHRDARVLNRLSGAQVLEDKANLVLLQRLMTAPTLESFAVNGRSAVSRWAEQRFKEKISSRDSPPXXPSARESGYQHDDQFLARQRALVQGTSAATETTEKLEAVGNGPDGEEDWWCVKAAGGNGGLDIWVLHEGNWKMVTEALSEHESYVIQRYVARPMLWRGRKFHF 879
            MSC+RQQED HDST+GM TT+PKDCCAA P C ST VPSN+NAPHRRVRSMAETLEDRN PP QPTLTFRVTGASSVARLEPLLL  GGRNQRPTIW RSLDS DDG R+DFVWETTVTKQQQ+RHRDARVLNRLSGAQVLEDKANLVLLQRLMTAPTLES+AVNGR+AV+RWA+QRFKE+   RD PP  PS RE+GY HDDQFLAR+RALVQGTSAATETT++ EAVGNG  GEEDWWCVKAAGGNGGLDIWVLH+GNWKMVTEALSEHESYVIQRYVARPMLW+GRKFHF
Sbjct:    1 MSCSRQQEDAHDSTKGMPTTLPKDCCAALPSCLSTSVPSNTNAPHRRVRSMAETLEDRNFPPGQPTLTFRVTGASSVARLEPLLLGPGGRNQRPTIWSRSLDSGDDGVRVDFVWETTVTKQQQRRHRDARVLNRLSGAQVLEDKANLVLLQRLMTAPTLESYAVNGRNAVARWAQQRFKEQNLPRDRPPPPPSTREAGYPHDDQFLARKRALVQGTSAATETTQESEAVGNGHAGEEDWWCVKAAGGNGGLDIWVLHKGNWKMVTEALSEHESYVIQRYVARPMLWQGRKFHF 293
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BLAST of mRNA_E-fasciculatus_F_contig1616.4202.1 vs. uniprot
Match: A0A835Z2B8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2B8_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.870e-36
Identity = 100/251 (39.84%), Postives = 126/251 (50.20%), Query Frame = 1 
Query:  199 LTFRVTGASSVARLEPLLLDQGGRNQRPTIWLRSLDSCDDGARIDFVWETTVTKQQQQRHRDARVLNRLSGAQVLEDKANLVLLQRLMTAPTLESFAVNGRSAVSRWAEQRFKEKISSRDSPPXXPSARESGYQHDDQFLARQRA----------------LVQGTSAATETTEKLEAVGNGPDGEEDWWCVKAAGGNGGLDIWVLHEGNWKMVTEALSE-----HESYVIQRYVARPMLWR---GRKFHF 879
            L +RVTGA +V+R+ P+L       +  T+  +   S D+  R+DFV+ETTVTK  Q  HR A VLNRL G+ VLEDKA+  LL R M AP LES  V G S V  WA+ R+    +S  S     S  E          A  R                    G+ ++     +    G  P  E DWWCVKAA GNGG D+WVLH GN + +   LS        +YV+QRYVARP+L     G K HF
Sbjct:   11 LRYRVTGAGAVSRIRPVLDTDSVCREGCTVEWQEASSPDE--RLDFVYETTVTKDWQAAHRGAVVLNRLCGSVVLEDKASFALLSRRMAAPALESHLVEGSSGVEAWAKARWGPLFNSSSSGDEGGSGAEGNDSSSSGAAACHRCGSREPVGDXXXXXXXXXAAGSLSSGAAAARARCRG-APPREPDWWCVKAARGNGGGDVWVLHAGNAQRLVAQLSRCGGGGGGAYVLQRYVARPLLLPRCGGAKSHF 258
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BLAST of mRNA_E-fasciculatus_F_contig1616.4202.1 vs. uniprot
Match: W7TQE7_9STRA (Tubulin-tyrsoine ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQE7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.950e-16
Identity = 73/236 (30.93%), Postives = 108/236 (45.76%), Query Frame = 1 
Query:  199 LTFRVTGASSVARLEPLLLDQGGRNQRPTIWLRSLDSCDDGARIDFVWETTVTKQQQQRHRDARVLNRLSGAQVLEDKANLVLLQRLMTA-----PTLESFAVNGRSAVSRWAEQRFKEKISSRDSPPXXPSARESGYQHDDQFLARQRALVQGTSAA--TETTEKLEAVGNGPDGEEDWWCVKAAGGNGGLDIWVLHEGNWKM-VTEALSEHESYVIQRYVARPMLWRGR-KFHF 879
            L +R+TGA++ AR+ PLL ++   +        + +  D    +DFVWET V ++ +  H  ARVLNRLS   +LE+KA    +  L+++     P LE+  V    A + W + R                              RQ   VQ  +    T+ TE  E          +WW +KAAG NGG D+ VL      +    AL   +SYV+QRY+ RP+L   + KFH+
Sbjct:   22 LIYRITGAAAQARIVPLLQERAEVHWIAGRCQNACNQADPPVPLDFVWETHVARRDKPLHDCARVLNRLSNTVILENKAYFSHILALVSSQNQDIPVLETAVVRAMDAQA-WLDAR-----------------------------RRQLRTVQNANYTVFTDCTEDAE----------EWWILKAAGANGGGDVHVLPPACTHVPACIALRPLDSYVVQRYITRPLLLEKKYKFHY 217
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BLAST of mRNA_E-fasciculatus_F_contig1616.4202.1 vs. uniprot
Match: A0A7S2XVN0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVN0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.320e-15
Identity = 50/141 (35.46%), Postives = 70/141 (49.65%), Query Frame = 1 
Query:  469 PTLESFAVNGRSAVSRWAEQRFKEKISSRDSPPXXPSARESGYQHDDQFLARQRALVQGTSAATETTEKLEAVGNGPDGEE--DWWCVKAAGGNGGLDIWVLHEGNWKMVTEALS--EHESYVIQRYVARPMLWRGRKFHF 879
            PTL++F V  +  + RWA +R+ +  SS  +P                            S  T      + VG+G    E  DWW VK + GNGG DIWV+++ N++ V E +S  + E  V Q YVARP+L+ GRKFHF
Sbjct:    1 PTLKTFIVRDKDGLRRWARERWGDPESSEVAP------------------------ADNASTTTNQVSGAQPVGDGGGAGEGSDWWMVKVSKGNGGSDIWVINQQNFRAVLEDISAVKEEELVCQEYVARPLLFHGRKFHF 117
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1616.4202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LQ52_ECTSI3.390e-18086.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z2B8_9STRA1.870e-3639.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TQE7_9STRA2.950e-1630.93Tubulin-tyrsoine ligase n=1 Tax=Nannochloropsis ga... [more]
A0A7S2XVN0_9STRA1.320e-1535.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1616contigE-fasciculatus_F_contig1616:2..1619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score520.4
Seed ortholog evalue5.5e-145
Seed eggNOG ortholog2880.D8LQ52
Preferred nameTtll2
KEGG koko:K16608
EggNOG free text desc.protein polyglycylation
EggNOG OGsKOG2157@1,KOG2157@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTubulin-tyrosine ligase/Tubulin polyglutamylase
Ec32 orthologEc-26_006110.1
Exons3
Model size879
Cds size879
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1616.4202.1prot_E-fasciculatus_F_contig1616.4202.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1616 2..1619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928080.655231-CDS-E-fasciculatus_F_contig1616:1..491622928080.655231-CDS-E-fasciculatus_F_contig1616:1..49Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1616 2..49 -
1695995815.5591142-CDS-E-fasciculatus_F_contig1616:1..491695995815.5591142-CDS-E-fasciculatus_F_contig1616:1..49Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1616 2..49 -
1622928080.6696062-CDS-E-fasciculatus_F_contig1616:371..7851622928080.6696062-CDS-E-fasciculatus_F_contig1616:371..785Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1616 372..785 -
1695995815.5712187-CDS-E-fasciculatus_F_contig1616:371..7851695995815.5712187-CDS-E-fasciculatus_F_contig1616:371..785Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1616 372..785 -
1622928080.683895-CDS-E-fasciculatus_F_contig1616:1202..16191622928080.683895-CDS-E-fasciculatus_F_contig1616:1202..1619Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1616 1203..1619 -
1695995815.609935-CDS-E-fasciculatus_F_contig1616:1202..16191695995815.609935-CDS-E-fasciculatus_F_contig1616:1202..1619Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1616 1203..1619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1616.4202.1

>prot_E-fasciculatus_F_contig1616.4202.1 ID=prot_E-fasciculatus_F_contig1616.4202.1|Name=mRNA_E-fasciculatus_F_contig1616.4202.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=293bp
MSCTRQQEDGHDSTRGMRTTVPKDCCAAHPPCSSTPVPSNSNAPHRRVRS
MAETLEDRNLPPNQPTLTFRVTGASSVARLEPLLLDQGGRNQRPTIWLRS
LDSCDDGARIDFVWETTVTKQQQQRHRDARVLNRLSGAQVLEDKANLVLL
QRLMTAPTLESFAVNGRSAVSRWAEQRFKEKISSRDSPPPPPSARESGYQ
HDDQFLARQRALVQGTSAATETTEKLEAVGNGPDGEEDWWCVKAAGGNGG
LDIWVLHEGNWKMVTEALSEHESYVIQRYVARPMLWRGRKFHF
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mRNA from alignment at E-fasciculatus_F_contig1616:2..1619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1616.4202.1 ID=mRNA_E-fasciculatus_F_contig1616.4202.1|Name=mRNA_E-fasciculatus_F_contig1616.4202.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1616:2..1619- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCTGCACTCGCCAGCAGGAAGACGGGCACGATTCGACCAGAGGCAT
GCGTACGACAGTACCAAAGGATTGTTGTGCCGCGCATCCACCATGCTCAT
CGACACCTGTTCCATCGAATTCCAACGCCCCGCATCGACGGGTAAGGTCC
ATGGCGGAGACGCTCGAAGATCGTAACTTGCCGCCCAACCAACCAACGTT
GACGTTCCGCGTAACGGGGGCTTCGTCAGTGGCCCGCTTGGAGCCACTTC
TCCTCGACCAAGGCGGTAGGAACCAACGGCCAACGATTTGGTTGCGATCT
CTCGATAGCTGCGATGATGGTGCTCGCATTGATTTTGTGTGGGAAACAAC
CGTGACGAAGCAACAGCAACAGCGGCATCGGGATGCGAGAGTGCTGAACC
GCCTCAGCGGCGCGCAGGTGTGTGTACGTAGATGTTATACGGCAGTAGAT
CTTGGGGTTGATTTCTGCGTATGGCGATTGCATCCTTCGATTGTGGTTAT
ACCTCGAACGGGTAGTCTTTCTGTGTGTATATTTGTTTTTCCTAATAATG
ATTATCTGCCCGTGAAAACTGCCGTGATCGTGCTTTCGTCGCTGGACATA
AGTCGGTGCCAATACCACAAGTCGATGGATGAAAGTTTTATGTAGCCAAG
TCCAGACTTTTGCAGTGCAGGTACTGGAGCGTCCAACAGCAGAGCGTGGT
TGCTAAATGTACGTAGTCTATTGCTGTATGCATGTTCCGGCACAGCTGAG
AGGTTGAAAATTCGCTTGAACGAAAATCACCGTTATCACTCGCGTCTCAA
ACTTATTTTACCTCTACTCTCCTCTTCTCGACAGGTCTTGGAAGATAAGG
CCAATCTCGTGCTACTCCAGCGGCTCATGACAGCGCCAACCCTGGAGTCT
TTCGCCGTCAACGGCCGAAGCGCGGTCTCTCGCTGGGCAGAACAACGTTT
CAAGGAGAAAATCTCTTCACGAGACAGTCCTCCGCCGCCACCCTCTGCTC
GTGAGTCCGGGTATCAACACGACGATCAATTTCTTGCCCGTCAACGCGCC
CTGGTCCAAGGTACATCAGCAGCAACGGAAACAACAGAAAAATTGGAAGC
AGTCGGGAACGGACCTGATGGCGAGGAGGACTGGTGGTGCGTGAAAGCGG
CAGGGGGGAACGGTGGGCTTGACATCTGGGTGCTGCATGAGGGGAACTGG
AAGATGGTGACGGAAGCGCTTAGCGAACATGAGAGCTACGTTATTCAGGT
CGGGACAAAGGAGGGGGCCTGAGCGTGGAAAGCTTGTACTTCGAAGCCAA
CACTGAACCACGTGGAGACGTTACGAACGATGGAATTTTGCCCGAGAGAG
AGTATCTCGGCATGATACAATCGTTGTTGCGCGACCGTTTCGGTTATGCA
GCAGCATGCTATACAATTGTATTAGAATTCCATTGCATTTTTGTGGCGAG
AACTTCAGTCGTATGCATAGCGACACTGCTTCCGAGTACCCTCTGATGAG
CAAAATGGGACACCATGACATGTACCGATCTTCCCACGCCTCTTCGCTAC
GACATGCCCTTTTTCATCAGCGGTACGTGGCAAGACCAATGCTTTGGCGA
GGGCGAAAATTTCACTTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1616:2..1619-

>mRNA_E-fasciculatus_F_contig1616.4202.1 ID=mRNA_E-fasciculatus_F_contig1616.4202.1|Name=mRNA_E-fasciculatus_F_contig1616.4202.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1758bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1616:2..1619- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCTGCACTCGCCAGCAGGAAGACGGGCACGATTCGACCAGAGGCAT
GCGTACGACAGTACCAAAGGATTGTTGTGCCGCGCATCCACCATGCTCAT
CGACACCTGTTCCATCGAATTCCAACGCCCCGCATCGACGGGTAAGGTCC
ATGGCGGAGACGCTCGAAGATCGTAACTTGCCGCCCAACCAACCAACGTT
GACGTTCCGCGTAACGGGGGCTTCGTCAGTGGCCCGCTTGGAGCCACTTC
TCCTCGACCAAGGCGGTAGGAACCAACGGCCAACGATTTGGTTGCGATCT
CTCGATAGCTGCGATGATGGTGCTCGCATTGATTTTGTGTGGGAAACAAC
CGTGACGAAGCAACAGCAACAGCGGCATCGGGATGCGAGAGTGCTGAACC
GCCTCAGCGGCGCGCAGATGAGCTGCACTCGCCAGCAGGAAGACGGGCAC
GATTCGACCAGAGGCATGCGTACGACAGTACCAAAGGATTGTTGTGCCGC
GCATCCACCATGCTCATCGACACCTGTTCCATCGAATTCCAACGCCCCGC
ATCGACGGGTAAGGTCCATGGCGGAGACGCTCGAAGATCGTAACTTGCCG
CCCAACCAACCAACGTTGACGTTCCGCGTAACGGGGGCTTCGTCAGTGGC
CCGCTTGGAGCCACTTCTCCTCGACCAAGGCGGTAGGAACCAACGGCCAA
CGATTTGGTTGCGATCTCTCGATAGCTGCGATGATGGTGCTCGCATTGAT
TTTGTGTGGGAAACAACCGTGACGAAGCAACAGCAACAGCGGCATCGGGA
TGCGAGAGTGCTGAACCGCCTCAGCGGCGCGCAGGTCTTGGAAGATAAGG
CCAATCTCGTGCTACTCCAGCGGCTCATGACAGCGCCAACCCTGGAGTCT
TTCGCCGTCAACGGCCGAAGCGCGGTCTCTCGCTGGGCAGAACAACGTTT
CAAGGAGAAAATCTCTTCACGAGACAGTCCTCCGCCGCCACCCTCTGCTC
GTGAGTCCGGGTATCAACACGACGATCAATTTCTTGCCCGTCAACGCGCC
CTGGTCCAAGGTACATCAGCAGCAACGGAAACAACAGAAAAATTGGAAGC
AGTCGGGAACGGACCTGATGGCGAGGAGGACTGGTGGTGCGTGAAAGCGG
CAGGGGGGAACGGTGGGCTTGACATCTGGGTGCTGCATGAGGGGAACTGG
AAGATGGTGACGGAAGCGCTTAGCGAACATGAGAGCTACGTTATTCAGGT
CTTGGAAGATAAGGCCAATCTCGTGCTACTCCAGCGGCTCATGACAGCGC
CAACCCTGGAGTCTTTCGCCGTCAACGGCCGAAGCGCGGTCTCTCGCTGG
GCAGAACAACGTTTCAAGGAGAAAATCTCTTCACGAGACAGTCCTCCGCC
GCCACCCTCTGCTCGTGAGTCCGGGTATCAACACGACGATCAATTTCTTG
CCCGTCAACGCGCCCTGGTCCAAGGTACATCAGCAGCAACGGAAACAACA
GAAAAATTGGAAGCAGTCGGGAACGGACCTGATGGCGAGGAGGACTGGTG
GTGCGTGAAAGCGGCAGGGGGGAACGGTGGGCTTGACATCTGGGTGCTGC
ATGAGGGGAACTGGAAGATGGTGACGGAAGCGCTTAGCGAACATGAGAGC
TACGTTATTCAGCGGTACGTGGCAAGACCAATGCTTTGGCGAGGGCGAAA
ATTTCACTTCCGGTACGTGGCAAGACCAATGCTTTGGCGAGGGCGAAAAT
TTCACTTC
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