mRNA_E-fasciculatus_F_contig16112.4183.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig16112.4183.1 vs. uniprot
Match: A0A6H5KKK8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK8_9PHAE) HSP 1 Score: 530 bits (1366), Expect = 9.680e-172 Identity = 282/340 (82.94%), Postives = 288/340 (84.71%), Query Frame = 1
Query: 1 NRPELGIMPTPGQNSAEFILLAAKAILQS-QQEGRAPPRRAARSPAVSYASSSIHSSGSAPPQGLIGVDPSSMLGVGDGGG------SAMGGDYLFEEAEKGLFNEPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLELLQRRPWGIGGLFEESSHAVGFWAQVSAVWGRGWTVQARRKDTLKALLFKNAFIGVLAATVFFQKGAVEKDAPLVDPLIQDVTPAASNVLGILYFGCLYGLTGHLQAIPEIFEWKRHFERERAGGMYSTTVYWLVSSTVHLPIILVGFLVYLNVCYWALGLPHEYAKFFIFSGIGLMSTLMGYSLAQTLSAAMSTPQ 999
+RPELGIMPTPGQNSAEFILLAAKA+LQS QQEG RR ARSP SYASSSIHSS S PQGLIGVDPSS+LGVGDG S MGGDYL+E+AEKGLFNEPPG TLELLQR+PWGIGG FEESSHAVGFWAQVSAVWGRGWTVQARRKDTLKALLFKNAFIGVLAATVFFQKGAVEKDAPLVDPLIQDVTPAASNVLGILYFGCLYGLTGHLQAIPEIFEWKRHFERERAGGMYSTTVYWLVSSTVHLPIILVGFLVYLNVCYWALGLPHEYAKFFIFSGIGLMSTLMGYSLAQTLSAAMSTPQ
Sbjct: 423 SRPELGIMPTPGQNSAEFILLAAKAVLQSSQQEGGRASRRGARSPEPSYASSSIHSSASTSPQGLIGVDPSSLLGVGDGXXXXXXXXSTMGGDYLYEDAEKGLFNEPPGGKPAAYGGKGGYAEEEGAEEGKEEGTT----TLELLQRQPWGIGGWFEESSHAVGFWAQVSAVWGRGWTVQARRKDTLKALLFKNAFIGVLAATVFFQKGAVEKDAPLVDPLIQDVTPAASNVLGILYFGCLYGLTGHLQAIPEIFEWKRHFERERAGGMYSTTVYWLVSSTVHLPIILVGFLVYLNVCYWALGLPHEYAKFFIFSGIGLMSTLMGYSLAQTLSAAMSTPQ 758
BLAST of mRNA_E-fasciculatus_F_contig16112.4183.1 vs. uniprot
Match: D8LSM1_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM1_ECTSI) HSP 1 Score: 519 bits (1336), Expect = 3.130e-170 Identity = 280/340 (82.35%), Postives = 285/340 (83.82%), Query Frame = 1
Query: 1 NRPELGIMPTPGQNSAEFILLAAKAILQSQQ---EGRAPPRRAARSPAVSYASSSIHSSGSAPPQGLIGVDPSSMLGVGDGGGSAMGG----DYLFEEAEKGLFNEPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLELLQRRPWGIGGLFEESSHAVGFWAQVSAVWGRGWTVQARRKDTLKALLFKNAFIGVLAATVFFQKGAVEKDAPLVDPLIQDVTPAASNVLGILYFGCLYGLTGHLQAIPEIFEWKRHFERERAGGMYSTTVYWLVSSTVHLPIILVGFLVYLNVCYWALGLPHEYAKFFIFSGIGLMSTLMGYSLAQTLSAAMSTPQ 999
+RPELGIMPTPGQNSAEFILLAAKA+LQS Q EGRA RR ARSP SYASSSIHSS S PQGLIGVDPSS+LGVGDG DY +E+AEKGLFNEPPG X TLELLQRRPWGIGG FEESSHAVGFWAQVSAVWGRGWTVQARRKDTLKALLFKNAFIGVLAATVFFQKGAVEKDAPLVDPLIQDVTPAASNVLGILYFGCLYGLTGHLQAIPEIFEWKRHFERERAGGMYSTTVYWLVSSTVHLPIILVGFLVYLNVCYWALGLPHEYAKFFIFSGIGLMSTLMGYSLAQTLSAAMSTPQ
Sbjct: 20 SRPELGIMPTPGQNSAEFILLAAKAVLQSSQQHQEGRAS-RRGARSPEPSYASSSIHSSASTSPQGLIGVDPSSLLGVGDGXXXXXXXXXXXDYFYEDAEKGLFNEPPGGKPAAYGGKGGYAEEEGAEXGKEEGTT----TLELLQRRPWGIGGWFEESSHAVGFWAQVSAVWGRGWTVQARRKDTLKALLFKNAFIGVLAATVFFQKGAVEKDAPLVDPLIQDVTPAASNVLGILYFGCLYGLTGHLQAIPEIFEWKRHFERERAGGMYSTTVYWLVSSTVHLPIILVGFLVYLNVCYWALGLPHEYAKFFIFSGIGLMSTLMGYSLAQTLSAAMSTPQ 354
BLAST of mRNA_E-fasciculatus_F_contig16112.4183.1 vs. uniprot
Match: A0A166ABW5_DAUCS (ABC transporter domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166ABW5_DAUCS) HSP 1 Score: 58.5 bits (140), Expect = 8.180e-6 Identity = 43/153 (28.10%), Postives = 66/153 (43.14%), Query Frame = 1
Query: 523 RRKDTLKALLFKNAFIGVLAATVFFQKGAVEKDAPLVDPLIQDVTPAASNVLGILYFGCLYGLTGHLQAIPEIFEWKRHFERERAGGMYSTTVYWLVSSTVHLPIILVGFLVYLNVCYWALGLPHEYAKFFIFSGIGLMSTLMGYSLAQTLSA 981
R K A L ++ +G+L T+F KD V LG F + L+ ++A+P + +R RE + G Y Y S+ + LP +LVG +Y YW +GL + +FF FS + + +LM S SA
Sbjct: 352 RTKQLFSAKLTQSIVVGLLLGTIFMN---ANKDHDTVK---------LHTRLGFFAFNLSFLLSSSIEALPIFVQERRILMRETSSGAYRIASYVTASTVIFLPFLLVGASLYSITVYWLVGLRRDIDRFFYFSLVVWLVSLMSNSFVAFCSA 492
BLAST of mRNA_E-fasciculatus_F_contig16112.4183.1 vs. uniprot
Match: A0A7S2B2D3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2D3_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 1.980e-5 Identity = 42/151 (27.81%), Postives = 67/151 (44.37%), Query Frame = 1
Query: 529 KDTLKALLFKNAFIGVLAATVFFQKGAVEKDAPLVDPLIQDVTPAASNVLGILYFGCLYGLTGHLQAIPEIFEWKRHFERERAGGMYSTTVYWLVSSTVHLPIILVGFLVYLNVCYWALGLPHEYAKFFIFSGIGLMSTLMGYSLAQTLSA 981
K +L A +N F+GV V++Q+ D AS + YF + +LQAIP++FE + F RER G YS Y + V+ + L Y +CY+ +GL + F F I ++ GY+ + ++A
Sbjct: 3 KKSLYAGFMRNLFVGVWYGCVYYQQ--------------TDYHTLAS----VCYFSQQFICMSNLQAIPQMFEERTLFYRERGAGFYSEASYLMARVLVNATVQLWFVFAYSALCYFLVGLRGTWKDFLYFYAIMFGLSIAGYAFSNMIAA 135
BLAST of mRNA_E-fasciculatus_F_contig16112.4183.1 vs. uniprot
Match: UPI0006D4EBCB (ATP-binding cassette sub-family G member 4 n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4EBCB) HSP 1 Score: 56.2 bits (134), Expect = 4.560e-5 Identity = 48/182 (26.37%), Postives = 84/182 (46.15%), Query Frame = 1
Query: 445 FEESSHAVGFWAQVSAVWGRGWTVQARRKDTLKALLFKNAFIGVLAATVFFQKGAVEKDAPLVDPLIQDVTPAASNVLGILYFGCLYGLTGHLQAIPEIFEWKRHFER-ERAGGMYSTTVYWLVSSTVHLPIILVGFLVYLNVCYWALGLPHEYAKFFIFSGIGLMSTLMGYSLAQTLSAAM 987
F + ++ F QV+ + R R + + L +A IG+L FF G DA +V SN +L+F L+ LQ++ F + R E YS Y+L ++ LPI + ++Y + YW G P E+ +FF+F+ +G++++L+ S+ + A+M
Sbjct: 331 FHKQTYPASFVKQVAVLVQRIGIQLIRDHFLMHSRLMIHAVIGLLIGVFFFDIGC---DAGMV----------FSNY-NVLFFSVLFLAFSALQSMAIAFPLELPIIRKEHFNCWYSIKAYYLANTIADLPIQVSCAIIYCTIVYWMSGQPPEWTRFFMFTFMGIITSLLAQSIGYLVGASM 498 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16112.4183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig16112.4183.1 >prot_E-fasciculatus_F_contig16112.4183.1 ID=prot_E-fasciculatus_F_contig16112.4183.1|Name=mRNA_E-fasciculatus_F_contig16112.4183.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=326bp MPTPGQNSAEFILLAAKAILQSQQEGRAPPRRAARSPAVSYASSSIHSSGback to top mRNA from alignment at E-fasciculatus_F_contig16112:219..2422- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig16112.4183.1 ID=mRNA_E-fasciculatus_F_contig16112.4183.1|Name=mRNA_E-fasciculatus_F_contig16112.4183.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2204bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16112:219..2422- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16112:219..2422- >mRNA_E-fasciculatus_F_contig16112.4183.1 ID=mRNA_E-fasciculatus_F_contig16112.4183.1|Name=mRNA_E-fasciculatus_F_contig16112.4183.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1956bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16112:219..2422- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |