mRNA_E-fasciculatus_F_contig16063.4151.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig16063.4151.1
Unique NamemRNA_E-fasciculatus_F_contig16063.4151.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig16063.4151.1 vs. uniprot
Match: A0A6H5KQV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV5_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 1.180e-74
Identity = 180/221 (81.45%), Postives = 186/221 (84.16%), Query Frame = 2 
Query:  668 SSTFSFAANNSSLAVRDTVSLETKRPSVRGPSGALASLGFARGCSLDVFEEDHGAAGRGNRGGGNPYERGEDXXXXXXXXXXXXXXYTPTRPPASGSAIGPGRQAEVFGVQHSTAEARIQELRDRQRGKATTVTLQSSVPMPSPGGPVTPGTDWDLAQGIAPSPGPNGRRRALMVGRQNRXXXXXXXXXXXXXXXXST--DGGAGAPGDRSSSRPPSSRGS 1324
            SST SFAANNSSLAVRD V LETKRP VRGPSGALA+LGFARGCS DVFEED       N  GGNP E GEDXXXXXXXXXXXXXX TP+R  ASGSAIG  RQAEVFG QHSTAEARIQELRDRQ  +AT VT  +S+ MPSPGGPVTPGTDWDLAQGIAPSPGPNGRRR LM+GRQNRXXXXXXXXXXXXXXXX T  DGG G  GDRSSSRPPSSRGS
Sbjct:  375 SSTCSFAANNSSLAVRDAVDLETKRPRVRGPSGALATLGFARGCSWDVFEED-------NTAGGNPSEGGEDXXXXXXXXXXXXXXXTPSRRAASGSAIGSARQAEVFGSQHSTAEARIQELRDRQGVEATPVTFPASMSMPSPGGPVTPGTDWDLAQGIAPSPGPNGRRRTLMIGRQNRXXXXXXXXXXXXXXXXRTSMDGGEGTSGDRSSSRPPSSRGS 588
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BLAST of mRNA_E-fasciculatus_F_contig16063.4151.1 vs. uniprot
Match: D8LHR0_ECTSI (C-type lectin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR0_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 8.520e-48
Identity = 105/149 (70.47%), Postives = 112/149 (75.17%), Query Frame = 2 
Query:  674 TFSFAANNSSLAVRDTVSLETKRPSVRGPSGALASLGFARGCSLDVFEEDHGAAGRGNRGGGNPYERGEDXXXXXXXXXXXXXXYTPTRPPASGSAIGPGRQAEVFGVQHSTAEARIQELRDRQRGKATTVTLQSSVPMPSPGGPVTPG 1120
            TFSFAANNSSLAVRD  +LETKRPSVRGPSGALASLGFARGCSLDVFEE+       N  GGNP ER ED              YTP+RP ASGSA+G  RQAEVFG Q+STA ARIQELRDRQR KAT VT Q+ + MPSPGGPVTPG
Sbjct:  907 TFSFAANNSSLAVRDAENLETKRPSVRGPSGALASLGFARGCSLDVFEEE-------NTAGGNPSERVEDGGSMYDGGSEAGSRYTPSRPAASGSAVGSARQAEVFGSQYSTAGARIQELRDRQRVKATPVTFQAPMSMPSPGGPVTPG 1048
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig16063.4151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQV5_9PHAE1.180e-7481.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHR0_ECTSI8.520e-4870.47C-type lectin domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig16063contigE-fasciculatus_F_contig16063:97..2856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionC-type lectin
Ec32 orthologEc-20_002710.2
Hectar predicted targeting categoryother localisation
Exons4
Model size1552
Cds size660
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig16063.4151.1prot_E-fasciculatus_F_contig16063.4151.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig16063 1383..2856 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928074.147043-UTR-E-fasciculatus_F_contig16063:96..8051622928074.147043-UTR-E-fasciculatus_F_contig16063:96..805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16063 97..805 +
1695995812.4900157-UTR-E-fasciculatus_F_contig16063:96..8051695995812.4900157-UTR-E-fasciculatus_F_contig16063:96..805Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16063 97..805 +
1622928074.1593812-UTR-E-fasciculatus_F_contig16063:1199..13821622928074.1593812-UTR-E-fasciculatus_F_contig16063:1199..1382Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16063 1200..1382 +
1695995812.5002475-UTR-E-fasciculatus_F_contig16063:1199..13821695995812.5002475-UTR-E-fasciculatus_F_contig16063:1199..1382Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig16063 1200..1382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928074.17298-CDS-E-fasciculatus_F_contig16063:1382..14751622928074.17298-CDS-E-fasciculatus_F_contig16063:1382..1475Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16063 1383..1475 +
1695995812.5171432-CDS-E-fasciculatus_F_contig16063:1382..14751695995812.5171432-CDS-E-fasciculatus_F_contig16063:1382..1475Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16063 1383..1475 +
1622928074.1919193-CDS-E-fasciculatus_F_contig16063:2054..21871622928074.1919193-CDS-E-fasciculatus_F_contig16063:2054..2187Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16063 2055..2187 +
1695995812.5293837-CDS-E-fasciculatus_F_contig16063:2054..21871695995812.5293837-CDS-E-fasciculatus_F_contig16063:2054..2187Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16063 2055..2187 +
1622928074.2079382-CDS-E-fasciculatus_F_contig16063:2422..28561622928074.2079382-CDS-E-fasciculatus_F_contig16063:2422..2856Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16063 2423..2856 +
1695995812.5446043-CDS-E-fasciculatus_F_contig16063:2422..28561695995812.5446043-CDS-E-fasciculatus_F_contig16063:2422..2856Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig16063 2423..2856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig16063.4151.1

>prot_E-fasciculatus_F_contig16063.4151.1 ID=prot_E-fasciculatus_F_contig16063.4151.1|Name=mRNA_E-fasciculatus_F_contig16063.4151.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=220bp
MYDGGSEAGSRYTPTRPPASGSAIGPGRQAEVFGVQHSTAEARIQELRDR
QRGKATTVTLQSSVPMPSPGGPVTPGTDWDLAQGIAPSPGPNGRRRALMV
GRQNRSRSRSKGRHGGGSGRTSTDGGAGAPGDRSSSRPPSSRGSSVSRGA
AGVGSSRSSSAGGGGGGGGDNSSSPTRSRGPRGRGTPGRAGARGGSTTPG
SRGGGGEDSDSNSVYVEDSR
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mRNA from alignment at E-fasciculatus_F_contig16063:97..2856+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig16063.4151.1 ID=mRNA_E-fasciculatus_F_contig16063.4151.1|Name=mRNA_E-fasciculatus_F_contig16063.4151.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2760bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16063:97..2856+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATACCCGAGCTCGGGCAAGGACTCGAAACAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGGCGCGCCGCGGAAACACCGCGGGTGCGGAGGAACTGGTTCT
GCGGTACGCAGACGAAGGCGAGGGCGTGCTTGAGTACAGCGGCGAATCCG
GCGGTCGCGGTGGCGTGGGGATGGGGGCGGGGGCGGCGGTGACGGACGCT
GCTGCCAAGGTGAGAGTGTTCGTTCCGGTCGACCTTGGGGTGGAAGAAGA
AGGCGGCGCTGACGCCGATGCTGCTGCTGGTGCCTCGGAGTTCGGGTCGG
GCCCTCCGGCCGCCGTCGCCCACCAGCAGCGCCAGCAGCAGCGGCAAGAG
AAGCACCGACAGAGCAGGGGCGAAGAGTCTTCTATCAGTCCCCCCGGCGG
CGTCGAGCCCTTTGGCAAAGGAGCCCGCTCCAACACTTCGGCGGCGGCGG
CGGCGGCGGCTACAGCACGGTCCGGTTCTGGCGGGTCAGGCCCGGTGGGA
AGCCAGCGCAGCGACTCGGCGTCGCCGACGGCCGCTACCGTCGACACCGC
GAGCCTCAGCGCCCAGGACTCGAGTACCGGGGGCTCCGTGACCACGGGGG
CGGCGGGGGGGGGTCCGCCCTAGGTGGGCCTTCTGGTGGTCCGGGGCAGC
ACCACAGCAGGCACTCGTCCTCGACGTTCTCGTTCGCCGCCAACAACAGC
AGTCTGGCGGTCAGTACGCTTTGTTCCTCCGTCTTGTTTTGGCTTGTCGA
TACTGTTGTTGTGTTTCGCCACCGTGTTTTTGTTGTGTGCACCTTGCTGT
GGTGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGTTCGGCTTTGCCTCCG
CAGTAGGCTTTCCTGTAATTTTTTTTGGGCTGAACATCGAAATTCCCACG
CTCTTTGTCATGATTTTTTAGGGATTTCCCTGCAAGACCGACACACACAC
TTCTGGTTCCTCGTCTTTCGCTCGGCGATCGGTACCATCTCTTACTTCTT
CACGACAGAAACCACCGCACCGCAAACTGCCCTCACCAGAGAGACGCGAG
CTTACCACCGTGCCCCCCCCCCGCGCGCGCTATTTTTTCCCGTTTTTTCC
CAGGTGAGAGACACTGTGAGTCTCGAGACCAAGCGCCCGAGCGTCCGCGG
CCCGTCAGGGGCCCTGGCCTCCCTGGGCTTCGCCCGCGGCTGCTCGTTGG
ACGTTTTCGAGGAAGACCACGGCGCCGCCGGCCGTGGCAACCGCGGCGGC
GGTAACCCTTACGAGCGCGGCGAGGACGGCGGGTCCATGTACGACGGCGG
GTCGGAGGCCGGGTCTAGGTACACTCCGACACGGCCGCCCGCGTCTGGGT
CCGCGATCGGGCCGGGAAGACAAGCGGAGGTGAGAGAACGGACGTCTTTT
GGGTTGTGGATCTTAGGCGATTTTATTTTTATCTCCCTTCGTTTTTTGGT
GTGTGGTACTATTGAGGTATCATCAGTGTCATTATTATTATTTCTGACCT
TTTTGAGCATCTGGATCTTGAGCGAGGATTTGCCGCATGGTAGTCGGCTA
CGATGTTTGTTTGCGACTTTCGAGGTCTCGGTCCCATGGCGCTCTGCGCG
GCAGAGATAGCTTCAGCGGTTTGTGAACGCCGCTGGTCGTCTTTGGTTGT
TGGCGGGGGGCGAGGAGGAGGATTGTTGTCTCGTGTCTCGTCTGGGACTT
TATCCCGCAGAAACAAGAACTGGGAATGAATGCGAGTCGCTTTTTCAGCC
TGTCCAAGAACATGTACGCTTCAATTGGATCGGAAAGAAAAAAGACGCCA
TTGCTGTATGGTGTGCCTCTCTCATCTTCGCCGCTTCGTTTCGAAATCAC
TTGTGTGTAAGGTGAATCATGGCGGTGGCCGGCGCCCTCATACAGCAAAA
TCGTACTGGGTGGTATGTTTTTTGCGCTAATGGTTGTCTCGATTTTATTT
ACCTACAGGTGTTCGGTGTGCAGCACTCGACGGCGGAGGCGAGAATCCAG
GAGCTCAGAGACCGCCAGAGGGGCAAGGCAACCACTGTCACACTCCAGTC
TTCCGTGCCGATGCCTTCTCCTGGGGGTCCGGTAACCCCAGGTGAGTGAG
AAAGAGGGGCGAGAAACAGGCGCAGTTTAGTGTTGTTGGTGTTGTTGTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTG
CTTTCGCTGCTGTGTTTCTTGTTGCTGTCCAAGGAAACTGTGGTTGGTGA
GTACCGTACCTCCCACCCCTCCGAGAGACATAACAACCATCCACTCTCCT
CCTCCTCCTCCTCTTTCTCCGTCTAGGCACGGACTGGGACCTAGCCCAGG
GCATCGCGCCGTCCCCGGGCCCCAACGGCCGGCGGCGGGCGCTGATGGTG
GGCAGGCAAAACCGGTCGCGGTCGAGGTCAAAGGGGCGCCACGGCGGCGG
CAGCGGCAGAACTTCCACGGACGGCGGGGCGGGGGCCCCGGGGGATCGCT
CTTCGTCCAGACCCCCGTCGTCTCGCGGGAGCAGCGTCAGCCGCGGCGCC
GCCGGTGTGGGTAGCAGCAGGAGCAGCAGCGCCGGCGGCGGGGGCGGGGG
CGGCGGCGACAACAGCAGTAGTCCTACGAGGAGCCGGGGTCCCCGCGGGA
GGGGCACGCCCGGTCGGGCCGGTGCCAGGGGGGGATCGACGACTCCTGGA
AGTAGAGGCGGGGGCGGAGAAGACAGCGACTCCAACAGCGTGTACGTCGA
GGACAGCAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig16063:97..2856+

>mRNA_E-fasciculatus_F_contig16063.4151.1 ID=mRNA_E-fasciculatus_F_contig16063.4151.1|Name=mRNA_E-fasciculatus_F_contig16063.4151.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1320bp|location=Sequence derived from alignment at E-fasciculatus_F_contig16063:97..2856+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACGACGGCGGGTCGGAGGCCGGGTCTAGGTACACTCCGACACGGCC
GCCCGCGTCTGGGTCCGCGATCGGGCCGGGAAGACAAGCGGAGATGTACG
ACGGCGGGTCGGAGGCCGGGTCTAGGTACACTCCGACACGGCCGCCCGCG
TCTGGGTCCGCGATCGGGCCGGGAAGACAAGCGGAGGTGTTCGGTGTGCA
GCACTCGACGGCGGAGGCGAGAATCCAGGAGCTCAGAGACCGCCAGAGGG
GCAAGGCAACCACTGTCACACTCCAGTCTTCCGTGCCGATGCCTTCTCCT
GGGGGTCCGGTAACCCCAGGTGTTCGGTGTGCAGCACTCGACGGCGGAGG
CGAGAATCCAGGAGCTCAGAGACCGCCAGAGGGGCAAGGCAACCACTGTC
ACACTCCAGTCTTCCGTGCCGATGCCTTCTCCTGGGGGTCCGGTAACCCC
AGGCACGGACTGGGACCTAGCCCAGGGCATCGCGCCGTCCCCGGGCCCCA
ACGGCCGGCGGCGGGCGCTGATGGTGGGCAGGCAAAACCGGTCGCGGTCG
AGGTCAAAGGGGCGCCACGGCGGCGGCAGCGGCAGAACTTCCACGGACGG
CGGGGCGGGGGCCCCGGGGGATCGCTCTTCGTCCAGACCCCCGTCGTCTC
GCGGGAGCAGCGTCAGCCGCGGCGCCGCCGGTGTGGGTAGCAGCAGGAGC
AGCAGCGCCGGCGGCGGGGGCGGGGGCGGCGGCGACAACAGCAGTAGTCC
TACGAGGAGCCGGGGTCCCCGCGGGAGGGGCACGCCCGGTCGGGCCGGTG
CCAGGGGGGGATCGACGACTCCTGGAAGTAGAGGCGGGGGCGGAGAAGAC
AGCGACTCCAACAGCGTGTACGTCGAGGACAGCAGGGCACGGACTGGGAC
CTAGCCCAGGGCATCGCGCCGTCCCCGGGCCCCAACGGCCGGCGGCGGGC
GCTGATGGTGGGCAGGCAAAACCGGTCGCGGTCGAGGTCAAAGGGGCGCC
ACGGCGGCGGCAGCGGCAGAACTTCCACGGACGGCGGGGCGGGGGCCCCG
GGGGATCGCTCTTCGTCCAGACCCCCGTCGTCTCGCGGGAGCAGCGTCAG
CCGCGGCGCCGCCGGTGTGGGTAGCAGCAGGAGCAGCAGCGCCGGCGGCG
GGGGCGGGGGCGGCGGCGACAACAGCAGTAGTCCTACGAGGAGCCGGGGT
CCCCGCGGGAGGGGCACGCCCGGTCGGGCCGGTGCCAGGGGGGGATCGAC
GACTCCTGGAAGTAGAGGCGGGGGCGGAGAAGACAGCGACTCCAACAGCG
TGTACGTCGAGGACAGCAGG
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