mRNA_E-fasciculatus_F_contig1601.4124.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1601.4124.1
Unique NamemRNA_E-fasciculatus_F_contig1601.4124.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: D8LPP6_ECTSI (AP complex subunit sigma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP6_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.820e-36
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 213
            MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRR + +    G+
Sbjct:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGV 71          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A835Z9B6_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B6_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.050e-35
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 213
            MIKFVLMVNKMGQTRVSSYY+W+PIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRR + +    G+
Sbjct:    1 MIKFVLMVNKMGQTRVSSYYEWLPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGV 71          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S2UUI5_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUI5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.030e-27
Identity = 45/71 (63.38%), Postives = 60/71 (84.51%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 213
            MIKF+LMVNK GQTR+SSY++WM IPERVALE+E++R+C SR+E QCSF E+RGY++IYRR + +    G+
Sbjct:    1 MIKFILMVNKQGQTRLSSYFEWMTIPERVALESEIIRKCLSRAEYQCSFLEYRGYRVIYRRYASLFFIVGV 71          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: F0Y567_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y567_AURAN)

HSP 1 Score: 105 bits (262), Expect = 2.030e-27
Identity = 42/64 (65.62%), Postives = 58/64 (90.62%), Query Frame = 1
Query:    4 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCM 195
            I+F+LMVNK GQTR+S+YY+W+P+PERVALE+E++R+C SRSE QCSF E+RGYK++YRR + +
Sbjct:    3 IRFILMVNKQGQTRLSTYYEWLPMPERVALESEIIRKCLSRSEFQCSFVEYRGYKVVYRRYASL 66          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S3ZZG7_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZG7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.620e-27
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    4 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 213
            IKFVLMVNK GQTR+S+YY+W+ +PERVALEAE++R C SRSE QCSF E+RGYK++YRR + +    G+
Sbjct:    3 IKFVLMVNKQGQTRLSTYYEWLSMPERVALEAEIIRTCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGV 72          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: W7U353_9STRA (AP complex subunit sigma n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U353_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.260e-27
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 213
            MI+F+L VNK GQTR+SSYY WM IPERVALEAE++R+C SRSELQC F E+RG+K+IYRR + +    G+
Sbjct:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGV 71          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S1C3U2_9STRA (AP complex subunit sigma n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3U2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.760e-27
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    4 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 213
            IKFVLMVNK GQTR++ Y DW+PI ERVALEAE++R+C SR+ELQCSF E+RGYK++YRR + +    G+
Sbjct:    3 IKFVLMVNKQGQTRLAEYCDWLPIEERVALEAEIIRKCLSRNELQCSFMEYRGYKVVYRRYASLYFIVGV 72          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S2FA09_9STRA (AP complex subunit sigma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA09_9STRA)

HSP 1 Score: 104 bits (259), Expect = 9.860e-27
Identity = 45/71 (63.38%), Postives = 59/71 (83.10%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 213
            M+KFVLMVNK GQTR+SSYY+W+P+ ER ALEAE++R+C SR+E QCSF E+RGYK+IYRR + +    G+
Sbjct:   20 MLKFVLMVNKQGQTRLSSYYEWIPMQERCALEAEIIRKCLSRNETQCSFVEYRGYKVIYRRYASLFFIVGM 90          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S3GXI4_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXI4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.650e-26
Identity = 44/65 (67.69%), Postives = 56/65 (86.15%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCM 195
            MIKFVLMVNK GQTR++SY+ W PI ERVALEAE++RRC SR+E QCSF E+RG+K++YRR + +
Sbjct:    1 MIKFVLMVNKQGQTRLASYFQWYPIQERVALEAEIIRRCLSRTEFQCSFIEYRGFKVVYRRYASL 65          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: B8C3G2_THAPS (AP complex subunit sigma n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8C3G2_THAPS)

HSP 1 Score: 103 bits (256), Expect = 1.740e-26
Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 1
Query:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCM 195
            MI F+LMVNK GQTR+SSYY+WM + ERVALE+E++R+C SRSELQCSF E+RG+K+IYRR + +
Sbjct:    1 MISFILMVNKQGQTRLSSYYEWMDMQERVALESEIIRKCLSRSELQCSFLEYRGFKVIYRRYASL 65          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPP6_ECTSI1.820e-3687.32AP complex subunit sigma n=1 Tax=Ectocarpus silicu... [more]
A0A835Z9B6_9STRA2.050e-3584.51AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2UUI5_9STRA2.030e-2763.38AP complex subunit sigma n=1 Tax=Fibrocapsa japoni... [more]
F0Y567_AURAN2.030e-2765.63AP complex subunit sigma n=1 Tax=Aureococcus anoph... [more]
A0A7S3ZZG7_9STRA5.620e-2764.29AP complex subunit sigma n=1 Tax=Pelagomonas calce... [more]
W7U353_9STRA6.260e-2764.79AP complex subunit sigma n=2 Tax=Nannochloropsis g... [more]
A0A7S1C3U2_9STRA6.760e-2764.29AP complex subunit sigma n=1 Tax=Bicosoecida sp. C... [more]
A0A7S2FA09_9STRA9.860e-2763.38AP complex subunit sigma n=1 Tax=Florenciella parv... [more]
A0A7S3GXI4_9STRA1.650e-2667.69AP complex subunit sigma n=1 Tax=Spumella elongata... [more]
B8C3G2_THAPS1.740e-2667.69AP complex subunit sigma n=2 Tax=Thalassiosirales ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1601contigE-fasciculatus_F_contig1601:482..694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3e-28
Seed eggNOG ortholog2880.D8LPP6
KEGG rclassRC00004,RC00041
KEGG koko:K00649,ko:K12403
KEGG ReactionR01013
KEGG Pathwayko00564,ko04142,ko04146,map00564,map04142,map04146
EggNOG free text desc.protein transport
EggNOG OGsCOG5030@1,KOG0934@2759
EC2.3.1.42
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928070.6886928-CDS-E-fasciculatus_F_contig1601:481..6941622928070.6886928-CDS-E-fasciculatus_F_contig1601:481..694Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1601 482..694 -
1695995811.0186837-CDS-E-fasciculatus_F_contig1601:481..6941695995811.0186837-CDS-E-fasciculatus_F_contig1601:481..694Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1601 482..694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1601.4124.1prot_E-fasciculatus_F_contig1601.4124.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1601 482..694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1601.4124.1

>prot_E-fasciculatus_F_contig1601.4124.1 ID=prot_E-fasciculatus_F_contig1601.4124.1|Name=mRNA_E-fasciculatus_F_contig1601.4124.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=71bp
MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFF
EFRGYKIIYRRVSCMSVAQGL
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mRNA from alignment at E-fasciculatus_F_contig1601:482..694-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1601.4124.1 ID=mRNA_E-fasciculatus_F_contig1601.4124.1|Name=mRNA_E-fasciculatus_F_contig1601.4124.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=213bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1601:482..694- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCAAGTTTGTGCTGATGGTCAACAAAATGGGGCAGACACGTGTGTC GTCATACTACGACTGGATGCCTATTCCAGAGAGAGTAGCCCTAGAAGCAG AGGTTGTTCGACGGTGTTTCTCCCGATCAGAGCTGCAGTGTTCGTTCTTC GAGTTTCGGGGCTATAAAATCATCTATCGACGGGTGAGTTGCATGTCTGT TGCCCAGGGACTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1601:482..694-

>mRNA_E-fasciculatus_F_contig1601.4124.1 ID=mRNA_E-fasciculatus_F_contig1601.4124.1|Name=mRNA_E-fasciculatus_F_contig1601.4124.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=426bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1601:482..694- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCAAGTTTGTGCTGATGGTCAACAAAATGGGGCAGACACGTGTGTC
GTCATACTACGACTGGATGCCTATTCCAGAGAGAGTAGCCCTAGAAGCAG
AGGTTGTTCGACGGTGTTTCTCCCGATCAGAGCTGCAGTGTTCGTTCTTC
GAGTTTCGGGGCTATAAAATCATCTATCGACGGGTGAGTTGCATGTCTGT
TGCCCAGGGACTCATGATCAAGTTTGTGCTGATGGTCAACAAAATGGGGC
AGACACGTGTGTCGTCATACTACGACTGGATGCCTATTCCAGAGAGAGTA
GCCCTAGAAGCAGAGGTTGTTCGACGGTGTTTCTCCCGATCAGAGCTGCA
GTGTTCGTTCTTCGAGTTTCGGGGCTATAAAATCATCTATCGACGGGTGA
GTTGCATGTCTGTTGCCCAGGGACTC
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