prot_E-fasciculatus_F_contig1601.4124.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1601.4124.1
Unique Nameprot_E-fasciculatus_F_contig1601.4124.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length71
Homology
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: D8LPP6_ECTSI (AP complex subunit sigma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP6_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.820e-36
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 0
Query:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 71
            MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRR + +    G+
Sbjct:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGV 71          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A835Z9B6_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B6_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.050e-35
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 0
Query:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 71
            MIKFVLMVNKMGQTRVSSYY+W+PIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRR + +    G+
Sbjct:    1 MIKFVLMVNKMGQTRVSSYYEWLPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGV 71          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S2UUI5_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUI5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.030e-27
Identity = 45/71 (63.38%), Postives = 60/71 (84.51%), Query Frame = 0
Query:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 71
            MIKF+LMVNK GQTR+SSY++WM IPERVALE+E++R+C SR+E QCSF E+RGY++IYRR + +    G+
Sbjct:    1 MIKFILMVNKQGQTRLSSYFEWMTIPERVALESEIIRKCLSRAEYQCSFLEYRGYRVIYRRYASLFFIVGV 71          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: F0Y567_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y567_AURAN)

HSP 1 Score: 105 bits (262), Expect = 2.030e-27
Identity = 42/64 (65.62%), Postives = 58/64 (90.62%), Query Frame = 0
Query:    2 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCM 65
            I+F+LMVNK GQTR+S+YY+W+P+PERVALE+E++R+C SRSE QCSF E+RGYK++YRR + +
Sbjct:    3 IRFILMVNKQGQTRLSTYYEWLPMPERVALESEIIRKCLSRSEFQCSFVEYRGYKVVYRRYASL 66          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S3ZZG7_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZG7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.620e-27
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 0
Query:    2 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 71
            IKFVLMVNK GQTR+S+YY+W+ +PERVALEAE++R C SRSE QCSF E+RGYK++YRR + +    G+
Sbjct:    3 IKFVLMVNKQGQTRLSTYYEWLSMPERVALEAEIIRTCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGV 72          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: W7U353_9STRA (AP complex subunit sigma n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U353_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.260e-27
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 0
Query:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 71
            MI+F+L VNK GQTR+SSYY WM IPERVALEAE++R+C SRSELQC F E+RG+K+IYRR + +    G+
Sbjct:    1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGV 71          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S1C3U2_9STRA (AP complex subunit sigma n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3U2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.760e-27
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 0
Query:    2 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 71
            IKFVLMVNK GQTR++ Y DW+PI ERVALEAE++R+C SR+ELQCSF E+RGYK++YRR + +    G+
Sbjct:    3 IKFVLMVNKQGQTRLAEYCDWLPIEERVALEAEIIRKCLSRNELQCSFMEYRGYKVVYRRYASLYFIVGV 72          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S2FA09_9STRA (AP complex subunit sigma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA09_9STRA)

HSP 1 Score: 104 bits (259), Expect = 9.860e-27
Identity = 45/71 (63.38%), Postives = 59/71 (83.10%), Query Frame = 0
Query:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 71
            M+KFVLMVNK GQTR+SSYY+W+P+ ER ALEAE++R+C SR+E QCSF E+RGYK+IYRR + +    G+
Sbjct:   20 MLKFVLMVNKQGQTRLSSYYEWIPMQERCALEAEIIRKCLSRNETQCSFVEYRGYKVIYRRYASLFFIVGM 90          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S3GXI4_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXI4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.650e-26
Identity = 44/65 (67.69%), Postives = 56/65 (86.15%), Query Frame = 0
Query:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCM 65
            MIKFVLMVNK GQTR++SY+ W PI ERVALEAE++RRC SR+E QCSF E+RG+K++YRR + +
Sbjct:    1 MIKFVLMVNKQGQTRLASYFQWYPIQERVALEAEIIRRCLSRTEFQCSFIEYRGFKVVYRRYASL 65          
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: B8C3G2_THAPS (AP complex subunit sigma n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8C3G2_THAPS)

HSP 1 Score: 103 bits (256), Expect = 1.740e-26
Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 0
Query:    1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCM 65
            MI F+LMVNK GQTR+SSYY+WM + ERVALE+E++R+C SRSELQCSF E+RG+K+IYRR + +
Sbjct:    1 MISFILMVNKQGQTRLSSYYEWMDMQERVALESEIIRKCLSRSELQCSFLEYRGFKVIYRRYASL 65          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPP6_ECTSI1.820e-3687.32AP complex subunit sigma n=1 Tax=Ectocarpus silicu... [more]
A0A835Z9B6_9STRA2.050e-3584.51AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2UUI5_9STRA2.030e-2763.38AP complex subunit sigma n=1 Tax=Fibrocapsa japoni... [more]
F0Y567_AURAN2.030e-2765.63AP complex subunit sigma n=1 Tax=Aureococcus anoph... [more]
A0A7S3ZZG7_9STRA5.620e-2764.29AP complex subunit sigma n=1 Tax=Pelagomonas calce... [more]
W7U353_9STRA6.260e-2764.79AP complex subunit sigma n=2 Tax=Nannochloropsis g... [more]
A0A7S1C3U2_9STRA6.760e-2764.29AP complex subunit sigma n=1 Tax=Bicosoecida sp. C... [more]
A0A7S2FA09_9STRA9.860e-2763.38AP complex subunit sigma n=1 Tax=Florenciella parv... [more]
A0A7S3GXI4_9STRA1.650e-2667.69AP complex subunit sigma n=1 Tax=Spumella elongata... [more]
B8C3G2_THAPS1.740e-2667.69AP complex subunit sigma n=2 Tax=Thalassiosirales ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.450.60coord: 1..69
e-value: 4.7E-17
score: 64.3
NoneNo IPR availablePANTHERPTHR11753:SF4AP-4 COMPLEX SUBUNIT SIGMA-1coord: 1..63
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..62
e-value: 6.0E-10
score: 39.2
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 1..63
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 1..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1601contigE-fasciculatus_F_contig1601:482..694 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1601.4124.1mRNA_E-fasciculatus_F_contig1601.4124.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1601 482..694 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1601.4124.1 ID=prot_E-fasciculatus_F_contig1601.4124.1|Name=mRNA_E-fasciculatus_F_contig1601.4124.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=71bp
MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFF
EFRGYKIIYRRVSCMSVAQGL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom_sf
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su