mRNA_E-fasciculatus_F_contig1601.4124.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: D8LPP6_ECTSI (AP complex subunit sigma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP6_ECTSI) HSP 1 Score: 128 bits (322), Expect = 1.820e-36 Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 213
MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRR + + G+
Sbjct: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGV 71
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A835Z9B6_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B6_9STRA) HSP 1 Score: 125 bits (315), Expect = 2.050e-35 Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 213
MIKFVLMVNKMGQTRVSSYY+W+PIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRR + + G+
Sbjct: 1 MIKFVLMVNKMGQTRVSSYYEWLPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGV 71
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S2UUI5_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUI5_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.030e-27 Identity = 45/71 (63.38%), Postives = 60/71 (84.51%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 213
MIKF+LMVNK GQTR+SSY++WM IPERVALE+E++R+C SR+E QCSF E+RGY++IYRR + + G+
Sbjct: 1 MIKFILMVNKQGQTRLSSYFEWMTIPERVALESEIIRKCLSRAEYQCSFLEYRGYRVIYRRYASLFFIVGV 71
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: F0Y567_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y567_AURAN) HSP 1 Score: 105 bits (262), Expect = 2.030e-27 Identity = 42/64 (65.62%), Postives = 58/64 (90.62%), Query Frame = 1
Query: 4 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCM 195
I+F+LMVNK GQTR+S+YY+W+P+PERVALE+E++R+C SRSE QCSF E+RGYK++YRR + +
Sbjct: 3 IRFILMVNKQGQTRLSTYYEWLPMPERVALESEIIRKCLSRSEFQCSFVEYRGYKVVYRRYASL 66
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S3ZZG7_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZG7_9STRA) HSP 1 Score: 104 bits (259), Expect = 5.620e-27 Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query: 4 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 213
IKFVLMVNK GQTR+S+YY+W+ +PERVALEAE++R C SRSE QCSF E+RGYK++YRR + + G+
Sbjct: 3 IKFVLMVNKQGQTRLSTYYEWLSMPERVALEAEIIRTCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGV 72
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: W7U353_9STRA (AP complex subunit sigma n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U353_9STRA) HSP 1 Score: 104 bits (260), Expect = 6.260e-27 Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 213
MI+F+L VNK GQTR+SSYY WM IPERVALEAE++R+C SRSELQC F E+RG+K+IYRR + + G+
Sbjct: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGV 71
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S1C3U2_9STRA (AP complex subunit sigma n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3U2_9STRA) HSP 1 Score: 103 bits (258), Expect = 6.760e-27 Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query: 4 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 213
IKFVLMVNK GQTR++ Y DW+PI ERVALEAE++R+C SR+ELQCSF E+RGYK++YRR + + G+
Sbjct: 3 IKFVLMVNKQGQTRLAEYCDWLPIEERVALEAEIIRKCLSRNELQCSFMEYRGYKVVYRRYASLYFIVGV 72
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S2FA09_9STRA (AP complex subunit sigma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA09_9STRA) HSP 1 Score: 104 bits (259), Expect = 9.860e-27 Identity = 45/71 (63.38%), Postives = 59/71 (83.10%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCMSVAQGL 213
M+KFVLMVNK GQTR+SSYY+W+P+ ER ALEAE++R+C SR+E QCSF E+RGYK+IYRR + + G+
Sbjct: 20 MLKFVLMVNKQGQTRLSSYYEWIPMQERCALEAEIIRKCLSRNETQCSFVEYRGYKVIYRRYASLFFIVGM 90
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: A0A7S3GXI4_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXI4_9STRA) HSP 1 Score: 103 bits (256), Expect = 1.650e-26 Identity = 44/65 (67.69%), Postives = 56/65 (86.15%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCM 195
MIKFVLMVNK GQTR++SY+ W PI ERVALEAE++RRC SR+E QCSF E+RG+K++YRR + +
Sbjct: 1 MIKFVLMVNKQGQTRLASYFQWYPIQERVALEAEIIRRCLSRTEFQCSFIEYRGFKVVYRRYASL 65
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Match: B8C3G2_THAPS (AP complex subunit sigma n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8C3G2_THAPS) HSP 1 Score: 103 bits (256), Expect = 1.740e-26 Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRVSCM 195
MI F+LMVNK GQTR+SSYY+WM + ERVALE+E++R+C SRSELQCSF E+RG+K+IYRR + +
Sbjct: 1 MISFILMVNKQGQTRLSSYYEWMDMQERVALESEIIRKCLSRSELQCSFLEYRGFKVIYRRYASL 65 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1601.4124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1601.4124.1 >prot_E-fasciculatus_F_contig1601.4124.1 ID=prot_E-fasciculatus_F_contig1601.4124.1|Name=mRNA_E-fasciculatus_F_contig1601.4124.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=71bp MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFback to top mRNA from alignment at E-fasciculatus_F_contig1601:482..694- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1601.4124.1 ID=mRNA_E-fasciculatus_F_contig1601.4124.1|Name=mRNA_E-fasciculatus_F_contig1601.4124.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=213bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1601:482..694- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1601:482..694- >mRNA_E-fasciculatus_F_contig1601.4124.1 ID=mRNA_E-fasciculatus_F_contig1601.4124.1|Name=mRNA_E-fasciculatus_F_contig1601.4124.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=426bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1601:482..694- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |