mRNA_E-fasciculatus_F_contig10515.411.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10515.411.1
Unique NamemRNA_E-fasciculatus_F_contig10515.411.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10515.411.1 vs. uniprot
Match: D7FJP7_ECTSI (Rho guanine nucleotide exchange factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP7_ECTSI)

HSP 1 Score: 647 bits (1670), Expect = 4.030e-217
Identity = 415/608 (68.26%), Postives = 443/608 (72.86%), Query Frame = 3
Query:  183 MDNLQRDKGSMHTSAKNIDPAAARVPPVMVSDAPMTQAHVRVPDSVDRSEWLKLRSRRGSGRRRASSASATPPTLGATPPSHSRKMSMDSTTSSLATETSLRSAMSTPPQRGNNDERVRRSVTFAVDDHDHGRHRPSLDSEPRRRTASAAASSAQQCGVCRAEFTRYRRPHRCRACGKAVCATCSPARLPKRTCKPCAGDSAIPRVFPVVSPARGRVSPYALAEETAA-SATRAARRSVGGNTPVVVGVPAESA---SARGAARAAAVVDVGRVEGVGRAAAEEGSRSLDVAGNMRLRVPVSEDHVGKGEPEHPRSLGGEEGLGVSGSADAVGESEPRGSSSLRDMSQGREVGRSKGPSVVGGHQ-VGRLDRVDGACRGSNVDACGSATRAEGGTQLSPTASSRNDSPCFVAGRTASETTGQFLP-GSTAAGWDGRLPPTVTPGLHGSLGLEAAATTDGAGAHQAGVVVDGGSMPRDERAMSPASGEEISPEEEEEEHRVSIATGNEEVTAVLEVEVDPEVLSAPVPVSLPHPPPATASEATH-LC----IPLEATEGTRESPPSLPEGEGQTKIAPLGVLKRDPREEGGGVGSAPLRHRGPVEEDGQ 1973
            MDNLQRD GSMHT  KNID AAA  PPVMVSDAPMTQAHVRVPDSVDR+EWLKLRSRR              PTLGATPPSH RKMSMDSTTSSLATE SLRSAMSTP  RG NDERVRRSVTFAVDDHD  R RPSLDSEPRRR   AA+S+ QQCGVCRAEFTRYRRPHRCRACGKAVCATCSPARLPKRTCKPCAGDSAIPRVFPVVSPARGR+S +AL EET   SATRAARR  G   PV+VGVPA++    +A  AAR A+VV VGR E VGRA  EEGS  LDVAGN+RL   VS D VGKG+PE+PR LGGE GL V    D+VGESEPRGSSSLRD SQG EV RS G   V G Q V  LD +DG    SNVD CGS TR E GT LSPTAS R+D P  VAG  A+ T    LP  S AAG DG   PT TPGL+ S  +    TT G GA QAGVVVDGGS PRDER +SPAS EE  PEEEE+  R SI TGNEE +AV EVE +PEV  APVP +L HPPPA  S  T   C    +PLE  E TRE+PP   E EG T+IA   V   D REEGGGV S PLRHRGP+EE  Q
Sbjct:    1 MDNLQRDNGSMHT--KNIDRAAAGAPPVMVSDAPMTQAHVRVPDSVDRTEWLKLRSRRXXXXXXXXXXXXXXPTLGATPPSHGRKMSMDSTTSSLATEASLRSAMSTPLHRGQNDERVRRSVTFAVDDHD--RRRPSLDSEPRRR---AASSAQQQCGVCRAEFTRYRRPHRCRACGKAVCATCSPARLPKRTCKPCAGDSAIPRVFPVVSPARGRISAHALGEETTINSATRAARRGAG--APVMVGVPADTGVVVTAAAAAREASVVGVGRAEEVGRAGTEEGSSYLDVAGNVRLGGSVSGDRVGKGKPENPRRLGGEGGLDV----DSVGESEPRGSSSLRDTSQGGEVWRSNGVVGVAGDQHVEHLDSLDGT--NSNVDGCGSTTRVEFGTHLSPTASLRDDYPRPVAGSPAAAT----LPLDSAAAGLDGLPTPTATPGLNTSTTV----TTAGTGARQAGVVVDGGSKPRDERTVSPASDEEAKPEEEED--RESIVTGNEEGSAVPEVEDEPEVRPAPVPAALLHPPPAAVSVTTEPRCGQTHLPLEPNEATRETPPPSVEFEGGTEIAR--VPDPDTREEGGGVVSTPLRHRGPLEEGSQ 581          
BLAST of mRNA_E-fasciculatus_F_contig10515.411.1 vs. uniprot
Match: A0A6H5KYW1_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW1_9PHAE)

HSP 1 Score: 614 bits (1583), Expect = 2.170e-203
Identity = 400/620 (64.52%), Postives = 430/620 (69.35%), Query Frame = 3
Query:  183 MDNLQR-DKGSMHTSAKNIDPAAARVPPVMVSDAPMTQAHVRVPDSVDRSEWLKLRSRRGSGRRRASSASATPPTLGATPPSHSRKMSMDSTTSSLATETSLRSAMSTPPQRGNNDERVRRSVTFAVDDHDHGRHRPSLDSEPRRRTASAAASSA-----------------QQCGVCRAEFTRYRRPHRCRACGKAVCATCSPARLPKRTCKPCAGDSAIPRVFPVVSPARGRVSPYALAEETAASATRAARRSVGGNTPVVVGVPAESAS-ARGAARAAAVVDVGRVEGVGRAAAEEGSRSLDVAGNMRLRVPVSEDHVGKGEPEHPRSLGGEEGLGVSGSADAVGESEPRGSSSLRDMSQGREVGRSKG-PSVVGGHQVGRLDRVDGACRGSNVDACGSATRAEGGTQLSPTASSRNDSPCFVAGRTASETTGQFLPGSTAAGWDGRLPPTVTPGLHGSLGLEAAATTDGAGAHQAGVVVDGGSMPRDERAMSPASGEEISPEEEEEEHRVSIATGNEEVTAVLEVEVDPEVLSAPVPVSLPHPPPATASEATH-LC----IPLEATEGTRESPPSLPEGEGQTKIAPLGVLKRDPREEGGGVGSAPLRHRGPVEED 1967
            MDNLQR D GS+ TSAKNID AAA  PPV+VSDAPMTQAHVRVPDSVDR EWLKLRSRR S RRRASSAS+T PTLGA PPSHSRKMSMDSTTSSLATE SLRSAMSTP  RG NDERVRRSVTFAVDDHD  R RPSLDS PRRRTAS+A                      QCGVCRAEFTRYRRPHRCRAC K VCATCSPARLPKRTCKPCAGDSAIPRVF VVSPARGRVSP+A  EET  SATRA+RR VG    V+ GVPA++       A  A VV V R E VGRA  EEGS SL VAGN+RL   VSED VGKG+PE+PRS GG+ GLGV    D+VGESEP GSSSLR+ SQG EV RS G   V G      LD +DG    SN D CGSATR E  T LSPTAS  ND P                     AG DG  PPT TPGL+ +    A   T G GA QA VV DGGS PRDER +SPASGEE+ PEEE+EE RVSIAT NE  +AV EVE +PEV  APVP +L HPPPA AS AT   C    +PLEA E TRE+PP   E E  T+IA +   +   REE  GV S PLRHRGP+EED
Sbjct:    1 MDNLQRRDNGSIRTSAKNIDRAAAGAPPVIVSDAPMTQAHVRVPDSVDRPEWLKLRSRRRSDRRRASSASSTHPTLGAIPPSHSRKMSMDSTTSSLATEASLRSAMSTPLHRGQNDERVRRSVTFAVDDHD--RRRPSLDSNPRRRTASSAGRKIFPXXXXXXXXXXXXXXXXQCGVCRAEFTRYRRPHRCRACSKVVCATCSPARLPKRTCKPCAGDSAIPRVFSVVSPARGRVSPHAPGEETT-SATRASRRCVGAT--VMAGVPADTGVIVTAVAHEAEVVGVARAEEVGRAGTEEGSSSLGVAGNVRLGGSVSEDRVGKGKPENPRSSGGKGGLGV----DSVGESEPGGSSSLRNTSQGGEVWRSNGIVGVAGDQHAEHLDSLDGT--NSNTDGCGSATRVEFDTHLSPTAS-LNDYP--------------------PAGLDGLPPPTATPGLN-TYRYVATVATAGTGARQAWVVADGGSKPRDERTVSPASGEEVKPEEEDEEDRVSIATRNEVGSAVPEVEDEPEVRQAPVPAALLHPPPAAASLATEPRCGQPHLPLEANEATRETPPPSVEFERGTEIARVPNPRN--REERDGVVSTPLRHRGPLEED 585          
BLAST of mRNA_E-fasciculatus_F_contig10515.411.1 vs. uniprot
Match: A0A6H5JMZ6_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.650e-13
Identity = 83/218 (38.07%), Postives = 101/218 (46.33%), Query Frame = 3
Query:  273 SDAPMTQAHVRVPDSV-DRSEWLKL--RSRR------GSG-------RRRASSASATPPTLGATPPSHSRKMSMDSTTSSLATETS-LRSAMST-----------------------PPQRGNNDERVRRSVTFAVDDHDHGRHRPSLDSEPRRRTASAAASSAQQCGVCRAEFTRYRRPHRCRACGKAVCATCSPARLP---------KRTCKPCAG 779
            SDAP+ QA VR+P+S  DR EWLK   +SRR      GSG       RRR SS         +      R  S DS+ +   ++TS + S +ST                       P     + +R RRS         HG    S  S      +SA + S Q CGVC AEFTR RRPHRCR C +AVCA+CSP RLP         KRTC+ CAG
Sbjct:   35 SDAPLLQARVRIPESATDRREWLKQHSQSRRRQQPSPGSGLKTPHDGRRRPSSRFRPHAHAASNSEFRERTTSRDSSVAGGESDTSSVNSRLSTVSTPEISQRQRKMLQQRHQQVVGPASVAGSPDRTRRSRV------PHGSITRSSSSASTSVVSSAPSLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAG 246          
BLAST of mRNA_E-fasciculatus_F_contig10515.411.1 vs. uniprot
Match: D8LNU4_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNU4_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 3.860e-10
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 3
Query:  621 ASAAASSAQQCGVCRAEFTRYRRPHRCRACGKAVCATCSPARLP---------KRTCKPCAG 779
            +SA + S Q CGVC AEFTR RRPHRCR C +AVCA+CSP RLP         KRTC+ CAG
Sbjct:   45 SSAPSLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAG 106          
BLAST of mRNA_E-fasciculatus_F_contig10515.411.1 vs. uniprot
Match: D8LGV1_ECTSI (FYVE, RhoGEF and PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV1_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.610e-8
Identity = 87/275 (31.64%), Postives = 115/275 (41.82%), Query Frame = 3
Query:  258 PPVMVSDAPMTQAHVRVPDS-----VDRSEWLKLRSRRGSGRRRASSASATPPTLGATPPSHSRKMSM----DSTTSSLATETSLRSAMSTPPQRGNN--------------------DERVRRSVTFAV---------------DDHDHGRHRPS--------LDSEPR---RRTASAAASSAQQ-------CGVCRAEFTRYRRPHRCRACGKAVCATCSPARLP---------KRTCKPCAGDSAIPRVFPVVSPARGRVSPYALAEETAAS 869
            P   VSDAP+ QA V++PDS     +DR +WLK +S+    R++  S S +         S+  ++S     DS TSS+A+ +S  S +STP   G                         V R     V                       R S        + + PR    RT S+++ S++        C VC AEFT+ RRPHRCR C + VCA CSPARLP         KRTCK C GD A     P+V  A     P A+    A S
Sbjct:  130 PAAAVSDAPILQARVQIPDSASNTELDRRQWLKQQSKSRRRRQQRGSVSRS---------SYDSEVSSLAGDDSDTSSVASTSSRLSIVSTPEISGRKWKTRQXXXXXXXXXXXXXXXXXXVGRPAATPVVGXXXXXXXXXXXXXXXXXXXXXRSSWSTASMSAVGTRPRGTLTRTNSSSSLSSELSMTLLRWCAVCEAEFTQLRRPHRCRRCLEPVCAPCSPARLPVPGAGSLELKRTCKLCVGDDAA--AAPLVGAAAPSRRPNAVGAAAAPS 393          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10515.411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJP7_ECTSI4.030e-21768.26Rho guanine nucleotide exchange factor n=1 Tax=Ect... [more]
A0A6H5KYW1_9PHAE2.170e-20364.52FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JMZ6_9PHAE3.650e-1338.07FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LNU4_ECTSI3.860e-1061.29FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LGV1_ECTSI2.610e-831.64FYVE, RhoGEF and PH domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10515contigE-fasciculatus_F_contig10515:85..3362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-06_010690.1
Exons3
Model size1973
Cds size1791
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10515.411.1prot_E-fasciculatus_F_contig10515.411.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10515 85..3180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927549.8755925-CDS-E-fasciculatus_F_contig10515:84..14131622927549.8755925-CDS-E-fasciculatus_F_contig10515:84..1413Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10515 85..1413 -
1695995590.5043957-CDS-E-fasciculatus_F_contig10515:84..14131695995590.5043957-CDS-E-fasciculatus_F_contig10515:84..1413Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10515 85..1413 -
1622927549.888564-CDS-E-fasciculatus_F_contig10515:1464..18151622927549.888564-CDS-E-fasciculatus_F_contig10515:1464..1815Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10515 1465..1815 -
1695995590.525023-CDS-E-fasciculatus_F_contig10515:1464..18151695995590.525023-CDS-E-fasciculatus_F_contig10515:1464..1815Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10515 1465..1815 -
1622927549.900028-CDS-E-fasciculatus_F_contig10515:3069..31801622927549.900028-CDS-E-fasciculatus_F_contig10515:3069..3180Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10515 3070..3180 -
1695995590.5405507-CDS-E-fasciculatus_F_contig10515:3069..31801695995590.5405507-CDS-E-fasciculatus_F_contig10515:3069..3180Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10515 3070..3180 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927549.9130507-UTR-E-fasciculatus_F_contig10515:3180..33621622927549.9130507-UTR-E-fasciculatus_F_contig10515:3180..3362Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10515 3181..3362 -
1695995590.5490944-UTR-E-fasciculatus_F_contig10515:3180..33621695995590.5490944-UTR-E-fasciculatus_F_contig10515:3180..3362Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10515 3181..3362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10515.411.1

>prot_E-fasciculatus_F_contig10515.411.1 ID=prot_E-fasciculatus_F_contig10515.411.1|Name=mRNA_E-fasciculatus_F_contig10515.411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=597bp
MDNLQRDKGSMHTSAKNIDPAAARVPPVMVSDAPMTQAHVRVPDSVDRSE
WLKLRSRRGSGRRRASSASATPPTLGATPPSHSRKMSMDSTTSSLATETS
LRSAMSTPPQRGNNDERVRRSVTFAVDDHDHGRHRPSLDSEPRRRTASAA
ASSAQQCGVCRAEFTRYRRPHRCRACGKAVCATCSPARLPKRTCKPCAGD
SAIPRVFPVVSPARGRVSPYALAEETAASATRAARRSVGGNTPVVVGVPA
ESASARGAARAAAVVDVGRVEGVGRAAAEEGSRSLDVAGNMRLRVPVSED
HVGKGEPEHPRSLGGEEGLGVSGSADAVGESEPRGSSSLRDMSQGREVGR
SKGPSVVGGHQVGRLDRVDGACRGSNVDACGSATRAEGGTQLSPTASSRN
DSPCFVAGRTASETTGQFLPGSTAAGWDGRLPPTVTPGLHGSLGLEAAAT
TDGAGAHQAGVVVDGGSMPRDERAMSPASGEEISPEEEEEEHRVSIATGN
EEVTAVLEVEVDPEVLSAPVPVSLPHPPPATASEATHLCIPLEATEGTRE
SPPSLPEGEGQTKIAPLGVLKRDPREEGGGVGSAPLRHRGPVEEDGQ
back to top

mRNA from alignment at E-fasciculatus_F_contig10515:85..3362-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10515.411.1 ID=mRNA_E-fasciculatus_F_contig10515.411.1|Name=mRNA_E-fasciculatus_F_contig10515.411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3278bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10515:85..3362- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTGCTCGGAGCCCCCTAAGAGCAATCAAATCAAATCAACCATCCGACAT CGGACACACCACCCTGCGCATGTTTTCGCATGCATCTCCCCACGATCTGA CGTCCACTTCGCTCCAGTCGAGTAACCACTTGAGCTTGGACAGGAGTTAG GAGGCAACGAGGCCCTCCTGCTGGCTGGTACCATGGACAACCTTCAAAGA GACAAAGGATCTATGCATACGAGTGCGAAGAACATTGACCCCGCCGCGGC TAGGGTTCCCCCCGTGATGGTTTCCGACGCCCCAATGACCCAGGTACAGC AGTACAATTGTATGCAGTTGTAGTATTTAGTCGTGGTGTGCACTTCTCGG TTCTGTTCCGTTCTTGTTCTCGCATCGCGAGCGGCAAATATCTCTGCCAA AATGGTACGAAGTTTGCGCACATACACATCGAATTTGATTTCCGATTTCC GATGTCCGATAATCGTCGACCTCGTCCGTTCTACCGTTCAAAACACTTCA CACCCCTTTACAGCAGCAGGTACATCTCTCGCATCACGGGTGTAGTTCCT GGTCGTCGTTTCGTGCTTCAAGTGATGAAGCACGATGAAGCACGATTTTT GGGGGGTGGTTTCTTGTTGAGTTTTACACATGCCGTTGCTTTGTTCACAG CAGCAGCATGCCGCGGAAGGTTGAAGCTGTCGACAGCACCCATTGAAATG TGATGAATCAGCCATAGACTGCATTGAAGAAATGTATCGCATGTTTATGG AGTGGTACATATATAGATGCAGCAGTAGTTTGAAGCGTCGACTGAAATTG TTCTCGCCTAACGATGATTGAAGGGGCGCACCGGAGAGGATATTCCCCTG CTGTGTGACCCGGGATCGTAGCTCGCGAGTAGAGAAGGAAATAGCATCAT GTGTGGTAGCATACGGAGGGTGGATAATTGTTGCGACCGTGACGATACCA GACAGCAGTATAAGCCTTCACTATCAGTAGCCTTCCTCCAGTAACAGACG GGGCGACAAAGAAGAAATACACGACCCGGATGGTTTCAAGCTTGCATCAT AACATACACACACATGCGTCAAACGAACGATGGCCAGCCTGATTGTTCTC TGTGGTGCGCGGCCTCGAATTAGTTTGCACGCATGACGTTCTTTGCAATT TAGGGACCAAGTACAGAGCTACGGTATCACTCCAAGCACGGCGCAAGTTG GTAGAACGATAGGGCTGTCGGTGGCGGTCCGCCCTTGCCGGTTACGCGGG TGGCCAAAGGAGGTTGTGACTGGTGCCCGACCTCCCCACAACCTCCCGAG AGTCAGGTTGTGCGCCGACATATGCAGCTAGCCCCGCATCACGGACTGTA GCATTGGTCCAATCAATAGGGCGGACTAGAAGCGTAGATCCAAGTTCGAT CCCCAACGTCCCAACCTCACGCCCGTGGAGGTTGGCCACCCGTGTACCTG ATTCGCTCAATCCCCATTCCTTCACCCATGGTTGACTCAACTAACTTGCC TCCCTTTGCTCCTTCCACACCTTCCACATCCGTGATGCTCAACACAGGCA CACGTCCGAGTGCCTGACTCTGTGGACCGGAGCGAGTGGTTGAAGCTCCG CTCGAGGCGCGGCAGCGGCAGAAGACGGGCCTCCTCGGCCTCCGCCACCC CCCCGACGCTCGGCGCTACCCCTCCCTCTCACAGCCGCAAGATGTCGATG GACTCGACGACCTCTTCGTTGGCTACCGAGACCTCCCTCCGCTCCGCCAT GTCCACGCCCCCGCAGCGGGGCAACAACGACGAGAGGGTCCGGCGTTCCG TAACTTTCGCTGTTGACGACCATGACCATGGCCGCCATCGCCCCTCGCTC GACTCTGAGCCACGAAGACGCACCGCATCAGCAGCAGCGTCATCTGCAGT GAGCAAAATATTTCCGTCGTCCTCTTCGTCGCTGGTACCGTCCCAACAGC AGCAGTGCGGAGTCTGCCGGGCCGAATTCACGCGCTACCGTCGGCCGCAC CGCTGCCGCGCGTGCGGCAAGGCCGTGTGCGCCACGTGCTCGCCGGCAAG GCTCCCGAAACGGACGTGCAAGCCCTGCGCCGGAGACTCGGCCATTCCCC GTGTCTTCCCGGTCGTTTCTCCGGCAAGGGGGCGTGTTTCTCCTTACGCG CTGGCGGAGGAAACGGCTGCAAGCGCTACACGAGCCGCACGGCGTAGCGT GGGCGGTAACACCCCGGTGGTGGTTGGGGTTCCTGCCGAATCGGCTTCGG CAAGGGGGGCGGCGCGCGCGGCGGCGGTGGTTGATGTTGGCCGAGTCGAA GGGGTGGGCAGGGCAGCGGCGGAGGAGGGGTCGAGATCTCTCGATGTCGC GGGGAATATGAGGTTGCGCGTCCCTGTCTCTGAGGATCATGTGGGCAAGG GCGAGCCGGAGCACCCGAGAAGTTTGGGCGGTGAAGAAGGGCTGGGCGTA TCCGGAAGCGCGGATGCTGTGGGTGAGAGCGAACCCAGGGGTTCGAGCAG CTTGAGAGACATGAGCCAAGGGAGAGAGGTAGGGCGCTCGAAAGGCCCGA GCGTTGTGGGCGGCCACCAGGTGGGGCGCTTGGATCGCGTAGACGGCGCC TGCCGTGGCAGCAACGTTGACGCTTGTGGAAGTGCCACCCGTGCCGAGGG CGGCACCCAACTCTCCCCAACAGCGTCGTCGAGGAATGATTCTCCGTGTT TCGTGGCCGGGCGCACGGCGTCGGAAACGACGGGGCAATTTCTCCCCGGT TCGACTGCCGCGGGCTGGGATGGACGGCTCCCACCAACAGTCACACCAGG GCTACACGGGTCTTTGGGCCTTGAAGCTGCTGCGACTACTGACGGTGCAG GTGCCCATCAGGCGGGGGTGGTAGTGGATGGAGGGTCCATGCCGAGAGAT GAGAGGGCTATGTCGCCTGCTTCGGGTGAGGAAATCAGCCCTGAGGAGGA GGAGGAGGAGCACCGCGTGTCTATCGCGACCGGAAACGAAGAGGTTACCG CGGTACTAGAGGTTGAGGTCGATCCTGAGGTCCTGTCGGCTCCTGTTCCT GTTTCTCTGCCGCATCCCCCTCCCGCGACCGCGTCAGAGGCGACCCACCT ATGCATACCTCTTGAGGCTACCGAGGGCACACGGGAGTCGCCGCCGTCCC TGCCCGAAGGTGAGGGGCAAACGAAGATTGCTCCACTAGGAGTGCTGAAG CGGGACCCCCGAGAAGAGGGGGGTGGGGTAGGGTCAGCACCGCTCCGCCA TCGGGGTCCCGTGGAGGAGGACGGTCAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10515:85..3362-

>mRNA_E-fasciculatus_F_contig10515.411.1 ID=mRNA_E-fasciculatus_F_contig10515.411.1|Name=mRNA_E-fasciculatus_F_contig10515.411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10515:85..3362- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACAACCTTCAAAGAGACAAAGGATCTATGCATACGAGTGCGAAGAA
CATTGACCCCGCCGCGGCTAGGGTTCCCCCCGTGATGGTTTCCGACGCCC
CAATGACCCAGATGGACAACCTTCAAAGAGACAAAGGATCTATGCATACG
AGTGCGAAGAACATTGACCCCGCCGCGGCTAGGGTTCCCCCCGTGATGGT
TTCCGACGCCCCAATGACCCAGGCACACGTCCGAGTGCCTGACTCTGTGG
ACCGGAGCGAGTGGTTGAAGCTCCGCTCGAGGCGCGGCAGCGGCAGAAGA
CGGGCCTCCTCGGCCTCCGCCACCCCCCCGACGCTCGGCGCTACCCCTCC
CTCTCACAGCCGCAAGATGTCGATGGACTCGACGACCTCTTCGTTGGCTA
CCGAGACCTCCCTCCGCTCCGCCATGTCCACGCCCCCGCAGCGGGGCAAC
AACGACGAGAGGGTCCGGCGTTCCGTAACTTTCGCTGTTGACGACCATGA
CCATGGCCGCCATCGCCCCTCGCTCGACTCTGAGCCACGAAGACGCACCG
CATCAGCAGCAGCGTCATCTGCAGCACACGTCCGAGTGCCTGACTCTGTG
GACCGGAGCGAGTGGTTGAAGCTCCGCTCGAGGCGCGGCAGCGGCAGAAG
ACGGGCCTCCTCGGCCTCCGCCACCCCCCCGACGCTCGGCGCTACCCCTC
CCTCTCACAGCCGCAAGATGTCGATGGACTCGACGACCTCTTCGTTGGCT
ACCGAGACCTCCCTCCGCTCCGCCATGTCCACGCCCCCGCAGCGGGGCAA
CAACGACGAGAGGGTCCGGCGTTCCGTAACTTTCGCTGTTGACGACCATG
ACCATGGCCGCCATCGCCCCTCGCTCGACTCTGAGCCACGAAGACGCACC
GCATCAGCAGCAGCGTCATCTGCACAGCAGTGCGGAGTCTGCCGGGCCGA
ATTCACGCGCTACCGTCGGCCGCACCGCTGCCGCGCGTGCGGCAAGGCCG
TGTGCGCCACGTGCTCGCCGGCAAGGCTCCCGAAACGGACGTGCAAGCCC
TGCGCCGGAGACTCGGCCATTCCCCGTGTCTTCCCGGTCGTTTCTCCGGC
AAGGGGGCGTGTTTCTCCTTACGCGCTGGCGGAGGAAACGGCTGCAAGCG
CTACACGAGCCGCACGGCGTAGCGTGGGCGGTAACACCCCGGTGGTGGTT
GGGGTTCCTGCCGAATCGGCTTCGGCAAGGGGGGCGGCGCGCGCGGCGGC
GGTGGTTGATGTTGGCCGAGTCGAAGGGGTGGGCAGGGCAGCGGCGGAGG
AGGGGTCGAGATCTCTCGATGTCGCGGGGAATATGAGGTTGCGCGTCCCT
GTCTCTGAGGATCATGTGGGCAAGGGCGAGCCGGAGCACCCGAGAAGTTT
GGGCGGTGAAGAAGGGCTGGGCGTATCCGGAAGCGCGGATGCTGTGGGTG
AGAGCGAACCCAGGGGTTCGAGCAGCTTGAGAGACATGAGCCAAGGGAGA
GAGGTAGGGCGCTCGAAAGGCCCGAGCGTTGTGGGCGGCCACCAGGTGGG
GCGCTTGGATCGCGTAGACGGCGCCTGCCGTGGCAGCAACGTTGACGCTT
GTGGAAGTGCCACCCGTGCCGAGGGCGGCACCCAACTCTCCCCAACAGCG
TCGTCGAGGAATGATTCTCCGTGTTTCGTGGCCGGGCGCACGGCGTCGGA
AACGACGGGGCAATTTCTCCCCGGTTCGACTGCCGCGGGCTGGGATGGAC
GGCTCCCACCAACAGTCACACCAGGGCTACACGGGTCTTTGGGCCTTGAA
GCTGCTGCGACTACTGACGGTGCAGGTGCCCATCAGGCGGGGGTGGTAGT
GGATGGAGGGTCCATGCCGAGAGATGAGAGGGCTATGTCGCCTGCTTCGG
GTGAGGAAATCAGCCCTGAGGAGGAGGAGGAGGAGCACCGCGTGTCTATC
GCGACCGGAAACGAAGAGGTTACCGCGGTACTAGAGGTTGAGGTCGATCC
TGAGGTCCTGTCGGCTCCTGTTCCTGTTTCTCTGCCGCATCCCCCTCCCG
CGACCGCGTCAGAGGCGACCCACCTATGCATACCTCTTGAGGCTACCGAG
GGCACACGGGAGTCGCCGCCGTCCCTGCCCGAAGGTGAGGGGCAAACGAA
GATTGCTCCACTAGGAGTGCTGAAGCGGGACCCCCGAGAAGAGGGGGGTG
GGGTAGGGTCAGCACCGCTCCGCCATCGGGGTCCCGTGGAGGAGGACGGT
CAGCAGCAGTGCGGAGTCTGCCGGGCCGAATTCACGCGCTACCGTCGGCC
GCACCGCTGCCGCGCGTGCGGCAAGGCCGTGTGCGCCACGTGCTCGCCGG
CAAGGCTCCCGAAACGGACGTGCAAGCCCTGCGCCGGAGACTCGGCCATT
CCCCGTGTCTTCCCGGTCGTTTCTCCGGCAAGGGGGCGTGTTTCTCCTTA
CGCGCTGGCGGAGGAAACGGCTGCAAGCGCTACACGAGCCGCACGGCGTA
GCGTGGGCGGTAACACCCCGGTGGTGGTTGGGGTTCCTGCCGAATCGGCT
TCGGCAAGGGGGGCGGCGCGCGCGGCGGCGGTGGTTGATGTTGGCCGAGT
CGAAGGGGTGGGCAGGGCAGCGGCGGAGGAGGGGTCGAGATCTCTCGATG
TCGCGGGGAATATGAGGTTGCGCGTCCCTGTCTCTGAGGATCATGTGGGC
AAGGGCGAGCCGGAGCACCCGAGAAGTTTGGGCGGTGAAGAAGGGCTGGG
CGTATCCGGAAGCGCGGATGCTGTGGGTGAGAGCGAACCCAGGGGTTCGA
GCAGCTTGAGAGACATGAGCCAAGGGAGAGAGGTAGGGCGCTCGAAAGGC
CCGAGCGTTGTGGGCGGCCACCAGGTGGGGCGCTTGGATCGCGTAGACGG
CGCCTGCCGTGGCAGCAACGTTGACGCTTGTGGAAGTGCCACCCGTGCCG
AGGGCGGCACCCAACTCTCCCCAACAGCGTCGTCGAGGAATGATTCTCCG
TGTTTCGTGGCCGGGCGCACGGCGTCGGAAACGACGGGGCAATTTCTCCC
CGGTTCGACTGCCGCGGGCTGGGATGGACGGCTCCCACCAACAGTCACAC
CAGGGCTACACGGGTCTTTGGGCCTTGAAGCTGCTGCGACTACTGACGGT
GCAGGTGCCCATCAGGCGGGGGTGGTAGTGGATGGAGGGTCCATGCCGAG
AGATGAGAGGGCTATGTCGCCTGCTTCGGGTGAGGAAATCAGCCCTGAGG
AGGAGGAGGAGGAGCACCGCGTGTCTATCGCGACCGGAAACGAAGAGGTT
ACCGCGGTACTAGAGGTTGAGGTCGATCCTGAGGTCCTGTCGGCTCCTGT
TCCTGTTTCTCTGCCGCATCCCCCTCCCGCGACCGCGTCAGAGGCGACCC
ACCTATGCATACCTCTTGAGGCTACCGAGGGCACACGGGAGTCGCCGCCG
TCCCTGCCCGAAGGTGAGGGGCAAACGAAGATTGCTCCACTAGGAGTGCT
GAAGCGGGACCCCCGAGAAGAGGGGGGTGGGGTAGGGTCAGCACCGCTCC
GCCATCGGGGTCCCGTGGAGGAGGACGGTCAG
back to top