mRNA_E-fasciculatus_F_contig10515.411.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10515.411.1 vs. uniprot
Match: D7FJP7_ECTSI (Rho guanine nucleotide exchange factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP7_ECTSI) HSP 1 Score: 647 bits (1670), Expect = 4.030e-217 Identity = 415/608 (68.26%), Postives = 443/608 (72.86%), Query Frame = 3
Query: 183 MDNLQRDKGSMHTSAKNIDPAAARVPPVMVSDAPMTQAHVRVPDSVDRSEWLKLRSRRGSGRRRASSASATPPTLGATPPSHSRKMSMDSTTSSLATETSLRSAMSTPPQRGNNDERVRRSVTFAVDDHDHGRHRPSLDSEPRRRTASAAASSAQQCGVCRAEFTRYRRPHRCRACGKAVCATCSPARLPKRTCKPCAGDSAIPRVFPVVSPARGRVSPYALAEETAA-SATRAARRSVGGNTPVVVGVPAESA---SARGAARAAAVVDVGRVEGVGRAAAEEGSRSLDVAGNMRLRVPVSEDHVGKGEPEHPRSLGGEEGLGVSGSADAVGESEPRGSSSLRDMSQGREVGRSKGPSVVGGHQ-VGRLDRVDGACRGSNVDACGSATRAEGGTQLSPTASSRNDSPCFVAGRTASETTGQFLP-GSTAAGWDGRLPPTVTPGLHGSLGLEAAATTDGAGAHQAGVVVDGGSMPRDERAMSPASGEEISPEEEEEEHRVSIATGNEEVTAVLEVEVDPEVLSAPVPVSLPHPPPATASEATH-LC----IPLEATEGTRESPPSLPEGEGQTKIAPLGVLKRDPREEGGGVGSAPLRHRGPVEEDGQ 1973
MDNLQRD GSMHT KNID AAA PPVMVSDAPMTQAHVRVPDSVDR+EWLKLRSRR PTLGATPPSH RKMSMDSTTSSLATE SLRSAMSTP RG NDERVRRSVTFAVDDHD R RPSLDSEPRRR AA+S+ QQCGVCRAEFTRYRRPHRCRACGKAVCATCSPARLPKRTCKPCAGDSAIPRVFPVVSPARGR+S +AL EET SATRAARR G PV+VGVPA++ +A AAR A+VV VGR E VGRA EEGS LDVAGN+RL VS D VGKG+PE+PR LGGE GL V D+VGESEPRGSSSLRD SQG EV RS G V G Q V LD +DG SNVD CGS TR E GT LSPTAS R+D P VAG A+ T LP S AAG DG PT TPGL+ S + TT G GA QAGVVVDGGS PRDER +SPAS EE PEEEE+ R SI TGNEE +AV EVE +PEV APVP +L HPPPA S T C +PLE E TRE+PP E EG T+IA V D REEGGGV S PLRHRGP+EE Q
Sbjct: 1 MDNLQRDNGSMHT--KNIDRAAAGAPPVMVSDAPMTQAHVRVPDSVDRTEWLKLRSRRXXXXXXXXXXXXXXPTLGATPPSHGRKMSMDSTTSSLATEASLRSAMSTPLHRGQNDERVRRSVTFAVDDHD--RRRPSLDSEPRRR---AASSAQQQCGVCRAEFTRYRRPHRCRACGKAVCATCSPARLPKRTCKPCAGDSAIPRVFPVVSPARGRISAHALGEETTINSATRAARRGAG--APVMVGVPADTGVVVTAAAAAREASVVGVGRAEEVGRAGTEEGSSYLDVAGNVRLGGSVSGDRVGKGKPENPRRLGGEGGLDV----DSVGESEPRGSSSLRDTSQGGEVWRSNGVVGVAGDQHVEHLDSLDGT--NSNVDGCGSTTRVEFGTHLSPTASLRDDYPRPVAGSPAAAT----LPLDSAAAGLDGLPTPTATPGLNTSTTV----TTAGTGARQAGVVVDGGSKPRDERTVSPASDEEAKPEEEED--RESIVTGNEEGSAVPEVEDEPEVRPAPVPAALLHPPPAAVSVTTEPRCGQTHLPLEPNEATRETPPPSVEFEGGTEIAR--VPDPDTREEGGGVVSTPLRHRGPLEEGSQ 581
BLAST of mRNA_E-fasciculatus_F_contig10515.411.1 vs. uniprot
Match: A0A6H5KYW1_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW1_9PHAE) HSP 1 Score: 614 bits (1583), Expect = 2.170e-203 Identity = 400/620 (64.52%), Postives = 430/620 (69.35%), Query Frame = 3
Query: 183 MDNLQR-DKGSMHTSAKNIDPAAARVPPVMVSDAPMTQAHVRVPDSVDRSEWLKLRSRRGSGRRRASSASATPPTLGATPPSHSRKMSMDSTTSSLATETSLRSAMSTPPQRGNNDERVRRSVTFAVDDHDHGRHRPSLDSEPRRRTASAAASSA-----------------QQCGVCRAEFTRYRRPHRCRACGKAVCATCSPARLPKRTCKPCAGDSAIPRVFPVVSPARGRVSPYALAEETAASATRAARRSVGGNTPVVVGVPAESAS-ARGAARAAAVVDVGRVEGVGRAAAEEGSRSLDVAGNMRLRVPVSEDHVGKGEPEHPRSLGGEEGLGVSGSADAVGESEPRGSSSLRDMSQGREVGRSKG-PSVVGGHQVGRLDRVDGACRGSNVDACGSATRAEGGTQLSPTASSRNDSPCFVAGRTASETTGQFLPGSTAAGWDGRLPPTVTPGLHGSLGLEAAATTDGAGAHQAGVVVDGGSMPRDERAMSPASGEEISPEEEEEEHRVSIATGNEEVTAVLEVEVDPEVLSAPVPVSLPHPPPATASEATH-LC----IPLEATEGTRESPPSLPEGEGQTKIAPLGVLKRDPREEGGGVGSAPLRHRGPVEED 1967
MDNLQR D GS+ TSAKNID AAA PPV+VSDAPMTQAHVRVPDSVDR EWLKLRSRR S RRRASSAS+T PTLGA PPSHSRKMSMDSTTSSLATE SLRSAMSTP RG NDERVRRSVTFAVDDHD R RPSLDS PRRRTAS+A QCGVCRAEFTRYRRPHRCRAC K VCATCSPARLPKRTCKPCAGDSAIPRVF VVSPARGRVSP+A EET SATRA+RR VG V+ GVPA++ A A VV V R E VGRA EEGS SL VAGN+RL VSED VGKG+PE+PRS GG+ GLGV D+VGESEP GSSSLR+ SQG EV RS G V G LD +DG SN D CGSATR E T LSPTAS ND P AG DG PPT TPGL+ + A T G GA QA VV DGGS PRDER +SPASGEE+ PEEE+EE RVSIAT NE +AV EVE +PEV APVP +L HPPPA AS AT C +PLEA E TRE+PP E E T+IA + + REE GV S PLRHRGP+EED
Sbjct: 1 MDNLQRRDNGSIRTSAKNIDRAAAGAPPVIVSDAPMTQAHVRVPDSVDRPEWLKLRSRRRSDRRRASSASSTHPTLGAIPPSHSRKMSMDSTTSSLATEASLRSAMSTPLHRGQNDERVRRSVTFAVDDHD--RRRPSLDSNPRRRTASSAGRKIFPXXXXXXXXXXXXXXXXQCGVCRAEFTRYRRPHRCRACSKVVCATCSPARLPKRTCKPCAGDSAIPRVFSVVSPARGRVSPHAPGEETT-SATRASRRCVGAT--VMAGVPADTGVIVTAVAHEAEVVGVARAEEVGRAGTEEGSSSLGVAGNVRLGGSVSEDRVGKGKPENPRSSGGKGGLGV----DSVGESEPGGSSSLRNTSQGGEVWRSNGIVGVAGDQHAEHLDSLDGT--NSNTDGCGSATRVEFDTHLSPTAS-LNDYP--------------------PAGLDGLPPPTATPGLN-TYRYVATVATAGTGARQAWVVADGGSKPRDERTVSPASGEEVKPEEEDEEDRVSIATRNEVGSAVPEVEDEPEVRQAPVPAALLHPPPAAASLATEPRCGQPHLPLEANEATRETPPPSVEFERGTEIARVPNPRN--REERDGVVSTPLRHRGPLEED 585
BLAST of mRNA_E-fasciculatus_F_contig10515.411.1 vs. uniprot
Match: A0A6H5JMZ6_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ6_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 3.650e-13 Identity = 83/218 (38.07%), Postives = 101/218 (46.33%), Query Frame = 3
Query: 273 SDAPMTQAHVRVPDSV-DRSEWLKL--RSRR------GSG-------RRRASSASATPPTLGATPPSHSRKMSMDSTTSSLATETS-LRSAMST-----------------------PPQRGNNDERVRRSVTFAVDDHDHGRHRPSLDSEPRRRTASAAASSAQQCGVCRAEFTRYRRPHRCRACGKAVCATCSPARLP---------KRTCKPCAG 779
SDAP+ QA VR+P+S DR EWLK +SRR GSG RRR SS + R S DS+ + ++TS + S +ST P + +R RRS HG S S +SA + S Q CGVC AEFTR RRPHRCR C +AVCA+CSP RLP KRTC+ CAG
Sbjct: 35 SDAPLLQARVRIPESATDRREWLKQHSQSRRRQQPSPGSGLKTPHDGRRRPSSRFRPHAHAASNSEFRERTTSRDSSVAGGESDTSSVNSRLSTVSTPEISQRQRKMLQQRHQQVVGPASVAGSPDRTRRSRV------PHGSITRSSSSASTSVVSSAPSLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAG 246
BLAST of mRNA_E-fasciculatus_F_contig10515.411.1 vs. uniprot
Match: D8LNU4_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNU4_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 3.860e-10 Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 3
Query: 621 ASAAASSAQQCGVCRAEFTRYRRPHRCRACGKAVCATCSPARLP---------KRTCKPCAG 779
+SA + S Q CGVC AEFTR RRPHRCR C +AVCA+CSP RLP KRTC+ CAG
Sbjct: 45 SSAPSLSQQSCGVCEAEFTRLRRPHRCRRCMEAVCASCSPLRLPVPGSGSLEPKRTCRLCAG 106
BLAST of mRNA_E-fasciculatus_F_contig10515.411.1 vs. uniprot
Match: D8LGV1_ECTSI (FYVE, RhoGEF and PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV1_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 2.610e-8 Identity = 87/275 (31.64%), Postives = 115/275 (41.82%), Query Frame = 3
Query: 258 PPVMVSDAPMTQAHVRVPDS-----VDRSEWLKLRSRRGSGRRRASSASATPPTLGATPPSHSRKMSM----DSTTSSLATETSLRSAMSTPPQRGNN--------------------DERVRRSVTFAV---------------DDHDHGRHRPS--------LDSEPR---RRTASAAASSAQQ-------CGVCRAEFTRYRRPHRCRACGKAVCATCSPARLP---------KRTCKPCAGDSAIPRVFPVVSPARGRVSPYALAEETAAS 869
P VSDAP+ QA V++PDS +DR +WLK +S+ R++ S S + S+ ++S DS TSS+A+ +S S +STP G V R V R S + + PR RT S+++ S++ C VC AEFT+ RRPHRCR C + VCA CSPARLP KRTCK C GD A P+V A P A+ A S
Sbjct: 130 PAAAVSDAPILQARVQIPDSASNTELDRRQWLKQQSKSRRRRQQRGSVSRS---------SYDSEVSSLAGDDSDTSSVASTSSRLSIVSTPEISGRKWKTRQXXXXXXXXXXXXXXXXXXVGRPAATPVVGXXXXXXXXXXXXXXXXXXXXXRSSWSTASMSAVGTRPRGTLTRTNSSSSLSSELSMTLLRWCAVCEAEFTQLRRPHRCRRCLEPVCAPCSPARLPVPGAGSLELKRTCKLCVGDDAA--AAPLVGAAAPSRRPNAVGAAAAPS 393 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10515.411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10515.411.1 >prot_E-fasciculatus_F_contig10515.411.1 ID=prot_E-fasciculatus_F_contig10515.411.1|Name=mRNA_E-fasciculatus_F_contig10515.411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=597bp MDNLQRDKGSMHTSAKNIDPAAARVPPVMVSDAPMTQAHVRVPDSVDRSEback to top mRNA from alignment at E-fasciculatus_F_contig10515:85..3362- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10515.411.1 ID=mRNA_E-fasciculatus_F_contig10515.411.1|Name=mRNA_E-fasciculatus_F_contig10515.411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3278bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10515:85..3362- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10515:85..3362- >mRNA_E-fasciculatus_F_contig10515.411.1 ID=mRNA_E-fasciculatus_F_contig10515.411.1|Name=mRNA_E-fasciculatus_F_contig10515.411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10515:85..3362- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |