mRNA_E-fasciculatus_F_contig160.4113.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig160.4113.1
Unique NamemRNA_E-fasciculatus_F_contig160.4113.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig160.4113.1 vs. uniprot
Match: A0A1V2H2N7_9PROT (Uncharacterized protein n=1 Tax=Roseomonas deserti TaxID=1817963 RepID=A0A1V2H2N7_9PROT)

HSP 1 Score: 53.5 bits (127), Expect = 4.170e-6
Identity = 31/94 (32.98%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    7 FRLMVEEGPDMMSIHGLDHRAQFRYASSAFQRVAGINPRGVLGRGLTDLVVAEDHVVVQEALLKVIFTRASDSVVSYRMARPHGDPLDVETSIR 288
            FRL+ E   DM+S  GLD R    Y S + +R+ G +   ++G+     +  ED   V+ A+ ++    A ++ V+YR+ RP G PL +E+++R
Sbjct:  331 FRLLAENSSDMVSRLGLDGRRT--YVSPSGERLMGRSAADLVGQPADGFIDPEDLPPVRSAIARLRAGEADEATVTYRIRRPDGTPLWLESALR 422
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig160.4113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1V2H2N7_9PROT4.170e-632.98Uncharacterized protein n=1 Tax=Roseomonas deserti... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig160contigE-fasciculatus_F_contig160:30646..31396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig160.4113.1prot_E-fasciculatus_F_contig160.4113.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig160 30646..31381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928069.562826-CDS-E-fasciculatus_F_contig160:30645..307411622928069.562826-CDS-E-fasciculatus_F_contig160:30645..30741Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig160 30646..30741 -
1695995810.5993838-CDS-E-fasciculatus_F_contig160:30645..307411695995810.5993838-CDS-E-fasciculatus_F_contig160:30645..30741Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig160 30646..30741 -
1622928069.5755534-CDS-E-fasciculatus_F_contig160:31198..313811622928069.5755534-CDS-E-fasciculatus_F_contig160:31198..31381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig160 31199..31381 -
1695995810.6130652-CDS-E-fasciculatus_F_contig160:31198..313811695995810.6130652-CDS-E-fasciculatus_F_contig160:31198..31381Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig160 31199..31381 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928069.5862734-UTR-E-fasciculatus_F_contig160:31381..313961622928069.5862734-UTR-E-fasciculatus_F_contig160:31381..31396Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig160 31382..31396 -
1695995810.6234202-UTR-E-fasciculatus_F_contig160:31381..313961695995810.6234202-UTR-E-fasciculatus_F_contig160:31381..31396Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig160 31382..31396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig160.4113.1

>prot_E-fasciculatus_F_contig160.4113.1 ID=prot_E-fasciculatus_F_contig160.4113.1|Name=mRNA_E-fasciculatus_F_contig160.4113.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=93bp
MVEEGPDMMSIHGLDHRAQFRYASSAFQRVAGINPRGVLGRGLTDLVVAE
DHVVVQEALLKVIFTRASDSVVSYRMARPHGDPLDVETSIRTG
back to top

mRNA from alignment at E-fasciculatus_F_contig160:30646..31396-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig160.4113.1 ID=mRNA_E-fasciculatus_F_contig160.4113.1|Name=mRNA_E-fasciculatus_F_contig160.4113.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=751bp|location=Sequence derived from alignment at E-fasciculatus_F_contig160:30646..31396- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGTTCCGTCTCATGGTGGAAGAGGGCCCCGACATGATGTCGATCCA
CGGCCTAGATCACCGAGCTCAGTTCCGGTACGCGTCCAGCGCCTTCCAGA
GGGTAGCCGGAATCAACCCCAGGGGCGTACTGGGTAGGGGCTTGACCGAC
CTCGTCGTTGCGGAGGATCATGTTGTCGTGCAGGAGGCGTTGCTAAAGGT
AACGATAAAAAGGGAGACACGGACGATGCTTCTGCCGGTGTTTCGAGGCA
TTCTGACTCGTGCTCCGCCATGAGCGGTCCCTTCTTGGCGTCCCGCTGCC
TCAAACGCTGCCAGAATTGGTTCGCTTGTCTCTCACGACAATGTCGGGTG
GTGCGGCATGTCTGTTCACTCTCGTCCGTTCTCAAGCACATGCCCGCCTT
CTCACAAGCTTGCTTTTCATCGCGAAAACGGTAACATCAACGTCATCTCG
GCAGCCGCGCATGAAACCTAAAACGAGCCCATTCGTCGTTTCTCCCCGAT
ACACCTAAAAGCCGGGATGGTGTGTGCTCACCCTTGGCGCAGGCGGCGCG
CGTTTATGATGATTTGGCGATTTCATAGTTGGCCGCTCTCTGCCTCTGCG
TGCGCATTGCCCCATTCTTGCCAACTTCACGCCGACACCCCCCCCCCCCA
CGCAGGTAATCTTCACGCGAGCTAGCGACAGCGTCGTCTCTTACCGCATG
GCAAGACCGCACGGCGACCCGCTTGACGTTGAAACCTCCATCCGAACCGG
G
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig160:30646..31396-

>mRNA_E-fasciculatus_F_contig160.4113.1 ID=mRNA_E-fasciculatus_F_contig160.4113.1|Name=mRNA_E-fasciculatus_F_contig160.4113.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=558bp|location=Sequence derived from alignment at E-fasciculatus_F_contig160:30646..31396- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGGAAGAGGGCCCCGACATGATGTCGATCCACGGCCTAGATCACCG
AGCTCAGTTCCGGTACGCGTCCAGCGCCTTCCAGAGGGTAGCCGGAATCA
ACCCCAGGGGCGTACTGGGTAGGGGCTTGACCGACCTCGTCGTTGCGGAG
GATCATGTTGTCGTGCAGGAGGCGTTGCTAAAGATGGTGGAAGAGGGCCC
CGACATGATGTCGATCCACGGCCTAGATCACCGAGCTCAGTTCCGGTACG
CGTCCAGCGCCTTCCAGAGGGTAGCCGGAATCAACCCCAGGGGCGTACTG
GGTAGGGGCTTGACCGACCTCGTCGTTGCGGAGGATCATGTTGTCGTGCA
GGAGGCGTTGCTAAAGGTAATCTTCACGCGAGCTAGCGACAGCGTCGTCT
CTTACCGCATGGCAAGACCGCACGGCGACCCGCTTGACGTTGAAACCTCC
ATCCGAACCGGGGTAATCTTCACGCGAGCTAGCGACAGCGTCGTCTCTTA
CCGCATGGCAAGACCGCACGGCGACCCGCTTGACGTTGAAACCTCCATCC
GAACCGGG
back to top