mRNA_E-fasciculatus_F_contig1597.4088.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1597.4088.1 vs. uniprot
Match: D7FKW4_ECTSI (Chloroplast 50S ribosomal protein L15 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW4_ECTSI) HSP 1 Score: 450 bits (1157), Expect = 1.150e-159 Identity = 228/232 (98.28%), Postives = 229/232 (98.71%), Query Frame = 1
Query: 1 MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE 696
MKATLATTALFCVG ANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSR RHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLR AGKVTKTKHRWHKVVGGMELET+GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE
Sbjct: 1 MKATLATTALFCVGVANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE 232
BLAST of mRNA_E-fasciculatus_F_contig1597.4088.1 vs. uniprot
Match: A0A835Z4H5_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H5_9STRA) HSP 1 Score: 280 bits (717), Expect = 9.070e-93 Identity = 147/227 (64.76%), Postives = 170/227 (74.89%), Query Frame = 1
Query: 1 MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESED-GLVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 678
M++ L A + A + F +AF GQ L A T S + ++MKIFDWKRRES+ L + ++ TL P+PGSRHR RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN EGATV+FE+L G +TKT RWHKVVG EL GLTVQAH FT SA EAIE GGKCQLLSPTTNE++ M
Sbjct: 1 MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKAS---SSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDM 224
BLAST of mRNA_E-fasciculatus_F_contig1597.4088.1 vs. uniprot
Match: A0A836CHQ3_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ3_9STRA) HSP 1 Score: 270 bits (690), Expect = 1.190e-88 Identity = 139/215 (64.65%), Postives = 162/215 (75.35%), Query Frame = 1
Query: 37 VGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDG-LVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 678
V A+A+ A +AF GQ + T S V+MKIFDWKRR+ + + ++ TL P+PGSRHR RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN EG+TV+FE+L G +TKT +WHKVVG EL LTVQAH FT SA EAIE GGKCQLLSPTTNE++ M
Sbjct: 14 VAVADAWVATSAFNGQAVGTHTCKASN---AVSMKIFDWKRRDDDSANTAVKELSPATLVPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGSTVSFETLHEQGTLTKTSLKWHKVVGNGELNVKNLTVQAHAFTGSAKEAIEGAGGKCQLLSPTTNEIVDM 225
BLAST of mRNA_E-fasciculatus_F_contig1597.4088.1 vs. uniprot
Match: A0A7S1BF06_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BF06_9STRA) HSP 1 Score: 248 bits (634), Expect = 3.800e-80 Identity = 128/190 (67.37%), Postives = 144/190 (75.79%), Query Frame = 1
Query: 118 TTTGVTMKIFDWKRRESEDGLVLDR----VAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGM-ELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 672
T TG TMK+FDWKRRE+++ + D +D LKPAPGSRHR KRKGRGIAAGQGA+CGFGMRGQKSRSG RAGFEGGQQPLYRRLPK VG+PMGPGH+K +NLIK D +NG EG+TV+F SL AG VTK K+ HKVV G E G+TVQAH FT SA AIE GGKC+LLSPTT VL
Sbjct: 33 TATGPTMKVFDWKRREADESAINDAETFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKTDEINGAAEGSTVSFGSLFEAGDVTKAKYGIHKVVTGKKEFSAKGVTVQAHAFTNSARAAIEGAGGKCELLSPTTGAVL 222
BLAST of mRNA_E-fasciculatus_F_contig1597.4088.1 vs. uniprot
Match: A0A7S1BKP2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKP2_9STRA) HSP 1 Score: 248 bits (633), Expect = 5.390e-80 Identity = 128/192 (66.67%), Postives = 146/192 (76.04%), Query Frame = 1
Query: 112 SRTTTGVTMKIFDWKRRESEDGLVLDR----VAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGM-ELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 672
S +T+ +TMK+FDWKRRE+++ + D +D LKPAPGSRHR KRKGRGIAAGQGA+CGFGMRGQKSRSG RAGFEGGQQPLYRRLPK VG+PMGPGH+K +NLIKLD LNG EG+TVNF SL +G +TK+K HKVV G E GL VQAH FT SA AIE GGKC+LLSPTT VL
Sbjct: 31 STSTSSLTMKVFDWKRREADESAINDAENFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKLDELNGAAEGSTVNFASLFESGDITKSKVGIHKVVTGKKEFTAKGLIVQAHAFTSSAQTAIEGAGGKCELLSPTTGAVL 222
BLAST of mRNA_E-fasciculatus_F_contig1597.4088.1 vs. uniprot
Match: A0A7S2K337_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K337_9STRA) HSP 1 Score: 242 bits (617), Expect = 1.310e-77 Identity = 125/205 (60.98%), Postives = 147/205 (71.71%), Query Frame = 1
Query: 73 FTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLS 675
F+G QL TS S + MK++DWKRRE+++ + D +D +KPAPGSR R RKGRGI+AGQGA+CGFGMRGQK+RSG R GFEGGQQPLYRRLPK VGRP GPGH K +N IKL LNG EG+TVNF+SL TK+K+ HK+VGG EL GLTVQAH FTKSA EAIEA GGKC+LL TT EV++
Sbjct: 23 FSGNQLQCTTSNQSN----LNMKLYDWKRREADESAINDVENFEFTLDNIKPAPGSRKRFTRKGRGISAGQGATCGFGMRGQKARSGRPTRPGFEGGQQPLYRRLPKFVGRPTGPGHEKTIYNTIKLSELNGAAEGSTVNFDSLFETKATTKSKYSIHKIVGGTELTAKGLTVQAHAFTKSAREAIEASGGKCELLKATTGEVIA 223
BLAST of mRNA_E-fasciculatus_F_contig1597.4088.1 vs. uniprot
Match: A0A448ZNF8_9STRA (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNF8_9STRA) HSP 1 Score: 237 bits (604), Expect = 1.230e-75 Identity = 124/206 (60.19%), Postives = 155/206 (75.24%), Query Frame = 1
Query: 73 FTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETS-GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLS 675
FTG +L A +++ + T ++MK+ DWKRR +++ + D +D+L+PAPGSR + RKGRGI+AGQGA+CGFGMRGQKSRSG R GFEGGQQPLYRRLPK GRPMGPGHTKK++NLI+LDALNG+ G+T NFESL + VTK+KH HKVV G E T+ +TVQAH FTKSA AIE GGKC+LL P+T EV++
Sbjct: 21 FTGTRLAAVSTSSANT---LSMKLHDWKRRTADESDINDVENYEFTLDSLRPAPGSRKKKTRKGRGISAGQGATCGFGMRGQKSRSGRPTRPGFEGGQQPLYRRLPKFTGRPMGPGHTKKEYNLIQLDALNGVAPGSTCNFESLFESKAVTKSKHSTHKVVVGREEFTAKDITVQAHAFTKSARAAIEGAGGKCELLKPSTGEVIA 223
BLAST of mRNA_E-fasciculatus_F_contig1597.4088.1 vs. uniprot
Match: A0A1E7FLQ7_9STRA (Ribosomal protein L15 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FLQ7_9STRA) HSP 1 Score: 236 bits (601), Expect = 5.170e-75 Identity = 117/187 (62.57%), Postives = 143/187 (76.47%), Query Frame = 1
Query: 127 GVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETS-GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 672
G+TMK++DWKRR++++ + D +D L+PAPGSR RKGRGIAAGQGA+CGFGMRGQKSRSG R GFEGGQ PLYRRLPK GRPMGPGH+KKQ+N+IKLD LN +D G+ NFESL TAG VTK+K+ HK+V G + T+ +TVQAH FTK+A AIE GGKC+LL P+T EV+
Sbjct: 44 GMTMKLYDWKRRDADESAINDVESFEFTLDNLRPAPGSRKSRTRKGRGIAAGQGATCGFGMRGQKSRSGRPTRPGFEGGQTPLYRRLPKFTGRPMGPGHSKKQYNIIKLDQLNNVDSGSVCNFESLFTAGSVTKSKYDTHKIVVGKDDFTAKDITVQAHAFTKTARTAIEDAGGKCELLKPSTGEVI 230
BLAST of mRNA_E-fasciculatus_F_contig1597.4088.1 vs. uniprot
Match: A0A5J4Z048_PORPP (50S ribosomal protein L15 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z048_PORPP) HSP 1 Score: 233 bits (594), Expect = 4.310e-74 Identity = 125/223 (56.05%), Postives = 150/223 (67.26%), Query Frame = 1
Query: 25 ALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESE---DGLVLDRVAVDTLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTKTKHRWHKVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDE 684
A F + +AFFA + A R +MK+FDWK+R +E + ++V T+ PAPGSR R RKGRG+AAGQG SCGFGMRGQKSRSG R GFEGGQ PLYRRLPK VGRPMGPGHTK +NL+KLD LN EG V F++L +GK+TK K + K++GG EL LTV+AH FT SAVEAIEA GGKC LLSPTT E ++M+E
Sbjct: 2 AAFVGASGSAFFAAQRTASVNVAVCGKAGVRRAVAPSMKVFDWKKRGAEAYSGRAEMGEMSVTTVIPAPGSRKRKTRKGRGVAAGQGRSCGFGMRGQKSRSGNPTRPGFEGGQTPLYRRLPKYVGRPMGPGHTKTMYNLVKLDILNKCAEGEVVTFDALVESGKMTKGKFKLAKIMGGAELTVKNLTVKAHAFTSSAVEAIEAAGGKCVLLSPTTGEDINMEE 224
BLAST of mRNA_E-fasciculatus_F_contig1597.4088.1 vs. uniprot
Match: A0A7S2V549_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V549_9STRA) HSP 1 Score: 233 bits (593), Expect = 8.450e-74 Identity = 136/230 (59.13%), Postives = 165/230 (71.74%), Query Frame = 1
Query: 28 LFCVGAANAFFAPTAFTGQQLTA--GTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVD--TLKPAPGSRHRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRTAGKVTK----TKHRWH-------KVVGGMELETSGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 672
L +GAA AF +P++F GQQL GTS T V+MKI+DWK R+ ++ +D V L+PAPGS RHKRKGRGIAAGQGASCGFGMRGQKSRSG VR GFEGGQ PLYRR+PK+ GRPMGPGH K ++ L++ + L+G++EG+TVNFESLR AGK+ K TKH+ + KVVGG +L T GLTVQAH FT SA +AIE GGKC +LS TTN+ L
Sbjct: 9 LAILGAAVAF-SPSSFGGQQLARVQGTS-----TNTVSMKIYDWKNRQ-KNWKHIDEVEFTHTNLRPAPGSTKRHKRKGRGIAAGQGASCGFGMRGQKSRSGKSVRPGFEGGQTPLYRRIPKIRGRPMGPGHQKIEYALMQFNFLDGVEEGSTVNFESLRAAGKMPKQGKRTKHKRNSGNHQLIKVVGGRDLNTKGLTVQAHAFTASAKKAIEEAGGKCVVLSKTTNKPL 231 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1597.4088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1597.4088.1 >prot_E-fasciculatus_F_contig1597.4088.1 ID=prot_E-fasciculatus_F_contig1597.4088.1|Name=mRNA_E-fasciculatus_F_contig1597.4088.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=233bp MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDback to top mRNA from alignment at E-fasciculatus_F_contig1597:7605..11322+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1597.4088.1 ID=mRNA_E-fasciculatus_F_contig1597.4088.1|Name=mRNA_E-fasciculatus_F_contig1597.4088.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3718bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1597:7605..11322+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1597:7605..11322+ >mRNA_E-fasciculatus_F_contig1597.4088.1 ID=mRNA_E-fasciculatus_F_contig1597.4088.1|Name=mRNA_E-fasciculatus_F_contig1597.4088.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1398bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1597:7605..11322+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |