mRNA_E-fasciculatus_F_contig15954.4079.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15954.4079.1
Unique NamemRNA_E-fasciculatus_F_contig15954.4079.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15954.4079.1 vs. uniprot
Match: D8LJQ1_ECTSI (Polyprenol reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJQ1_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.830e-48
Identity = 83/98 (84.69%), Postives = 90/98 (91.84%), Query Frame = 1 
Query:   85 MVELCNAERLGWAVLTILTAVVAATPRLYSIFLHGKLRPGASTTSEAGFPLRWLKVEVPKRLFSHFYFFCLASSALVIVDVLVYGGSLVVRRIQVRAI 378
            MVELCNAERLGWAVLTILTA VAATPRLYSIFLHGKLRPGASTTSEAGFPLRWLKVEVPKRLFSHFYFFCL SSALV +D ++YGGSL V  +Q +++
Sbjct:    1 MVELCNAERLGWAVLTILTAFVAATPRLYSIFLHGKLRPGASTTSEAGFPLRWLKVEVPKRLFSHFYFFCLVSSALVFIDTILYGGSLFVGSVQGKSV 98
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15954.4079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJQ1_ECTSI1.830e-4884.69Polyprenol reductase n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15954contigE-fasciculatus_F_contig15954:633..1973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue5.9e-40
Seed eggNOG ortholog2880.D8LJQ1
Preferred nameSRD5A3
KEGG rclassRC00145
KEGG koko:K12345
KEGG ReactionR02208,R02497,R08954,R10242
KEGG Pathwayko00140,map00140
GOsGO:0003674,GO:0003824,GO:0003865,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0006066,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006489,GO:0006490,GO:0006629,GO:0006644,GO:0006694,GO:0006702,GO:0006720,GO:0006793,GO:0006796,GO:0006807,GO:0007124,GO:0008150,GO:0008152,GO:0008202,GO:0008209,GO:0008299,GO:0008300,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010817,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0016049,GO:0016093,GO:0016094,GO:0016095,GO:0016229,GO:0016491,GO:0016627,GO:0016628,GO:0019348,GO:0019408,GO:0019538,GO:0019637,GO:0030176,GO:0030447,GO:0031224,GO:0031227,GO:0031984,GO:0033765,GO:0034645,GO:0034754,GO:0036211,GO:0040007,GO:0042175,GO:0042445,GO:0042446,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044182,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046164,GO:0046165,GO:0046465,GO:0055114,GO:0065007,GO:0065008,GO:0070085,GO:0070783,GO:0071704,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617
EggNOG free text desc.polyprenol reductase activity
EggNOG OGsKOG1640@1,KOG1640@2759
EC1.3.1.22,1.3.1.94
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog description3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal
Ec32 orthologEc-17_002880.1
Exons2
Model size614
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15954.4079.1prot_E-fasciculatus_F_contig15954.4079.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15954 791..1889 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.169977-UTR-E-fasciculatus_F_contig15954:632..7901622928064.169977-UTR-E-fasciculatus_F_contig15954:632..790Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15954 633..790 -
1695995808.1186032-UTR-E-fasciculatus_F_contig15954:632..7901695995808.1186032-UTR-E-fasciculatus_F_contig15954:632..790Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15954 633..790 -
1622928064.2207797-UTR-E-fasciculatus_F_contig15954:1889..19731622928064.2207797-UTR-E-fasciculatus_F_contig15954:1889..1973Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15954 1890..1973 -
1695995808.1717858-UTR-E-fasciculatus_F_contig15954:1889..19731695995808.1717858-UTR-E-fasciculatus_F_contig15954:1889..1973Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15954 1890..1973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.1884665-CDS-E-fasciculatus_F_contig15954:790..10821622928064.1884665-CDS-E-fasciculatus_F_contig15954:790..1082Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15954 791..1082 -
1695995808.1362705-CDS-E-fasciculatus_F_contig15954:790..10821695995808.1362705-CDS-E-fasciculatus_F_contig15954:790..1082Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15954 791..1082 -
1622928064.2057035-CDS-E-fasciculatus_F_contig15954:1809..18891622928064.2057035-CDS-E-fasciculatus_F_contig15954:1809..1889Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15954 1810..1889 -
1695995808.155491-CDS-E-fasciculatus_F_contig15954:1809..18891695995808.155491-CDS-E-fasciculatus_F_contig15954:1809..1889Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15954 1810..1889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15954.4079.1

>prot_E-fasciculatus_F_contig15954.4079.1 ID=prot_E-fasciculatus_F_contig15954.4079.1|Name=mRNA_E-fasciculatus_F_contig15954.4079.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=124bp
MVELCNAERLGWAVLTILTAVVAATPRLYSIFLHGKLRPGASTTSEAGFP
LRWLKVEVPKRLFSHFYFFCLASSALVIVDVLVYGGSLVVRRIQVRAIEA
KAPATKQRNRSERKGAYSRKRMQ*
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mRNA from alignment at E-fasciculatus_F_contig15954:633..1973-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15954.4079.1 ID=mRNA_E-fasciculatus_F_contig15954.4079.1|Name=mRNA_E-fasciculatus_F_contig15954.4079.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1341bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15954:633..1973- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCAACCAACATCTAAAGCTCGCGTGGGTGGAGTGCGGGGTGGACGGTG
GACACTGCCTCGTGCGCAGTAGGCTAAAACCGAAATGGTGGAACTTTGCA
ACGCCGAGCGTCTAGGATGGGCGGTCCTGACAATCCTAACAGCCGTTGTA
GCAGCAACCCCCAGGTAAGCGTAGAAAAGCGTATGCAGCTACATACGTAG
CTGCGTCTACCTAGGCGCATGCAGCAGCTCGCGACGACACATTTTGCGGC
TGCCTCACGTGTTGCAGGTGTGAAGTGGGCGGGTGTGAAGTTGGGTGCCT
ACGCCACAGCCGATGGTGGGCTAGATGGCCCGTAGAGAACTTCTAGCGGC
CACAAGTTGGCCGCCAACCCAATGTCGCATAATTTTTCCAAGTCAGAGGA
TACCGCGAGTCTCTCCGCGCTTCTGGCACGTGCTGCCTTGTGCTGCCGCG
GAGGATCCCACGTGCGACTATGATTGTCGAGTCTTACGTGACGAGCAGCA
GTGCGCTACAGCAGCAGTAGTGAGGGGTACCGCGCATTTGGCACCAGTTT
ACCGCCTGGGTGCGTGTCGTTGCAGTTACGCCTTGTTCTGACTTGCCCCA
TGCTGGGCTACCGTGTGGCAGCTCGCATCGATGTCATGCGTGCGACGAAC
AACAGCATTGCTGCGAAGGAACATGGATGAATACCTGGTGCTGCCCCAAC
CCCGGCATACTGATGAACATGTCAGCTGGCACAGCAGTTAAGCAGAGAGG
TCGGGGTCACCAGCACATCCATTCATACCGGACGTGGCAAAAGCCCTGGT
AAACCCACCCCACATCTGCTTGATGCGTATTCCCGCGTCCTCGCCGCACC
CGCATGTCCCCGGCTTGGCGACCAAACCTACATGCAAGCAGGTTGTACTC
GATTTTTCTACACGGCAAGCTTCGGCCCGGGGCGTCCACGACCTCGGAAG
CGGGCTTCCCGCTGAGGTGGCTCAAGGTCGAGGTGCCCAAGCGCTTGTTC
TCCCACTTCTACTTTTTCTGCCTTGCGTCGAGCGCGCTGGTCATCGTCGA
CGTGCTCGTGTACGGCGGTTCTCTTGTCGTACGGAGGATCCAGGTGCGCG
CCATTGAAGCAAAAGCCCCAGCTACCAAGCAGCGAAACCGGTCTGAGAGG
AAGGGGGCGTACTCCCGCAAACGCATGCAGTAGTCGTTAGACCTCGCATC
CCGACAACGCCGGGACGAAGGAGCGACATGCCGGGGGGGGGTTGTATTTC
TCGCCGGCCGAGGCTATGGTTCACAAGATATGAACCAAGAGGTGATCATC
ATCGTTTCGTTTTTTGCTGTGCCGAACCAGACATGCCGTTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15954:633..1973-

>mRNA_E-fasciculatus_F_contig15954.4079.1 ID=mRNA_E-fasciculatus_F_contig15954.4079.1|Name=mRNA_E-fasciculatus_F_contig15954.4079.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15954:633..1973- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGGAACTTTGCAACGCCGAGCGTCTAGGATGGGCGGTCCTGACAAT
CCTAACAGCCGTTGTAGCAGCAACCCCCAGATGGTGGAACTTTGCAACGC
CGAGCGTCTAGGATGGGCGGTCCTGACAATCCTAACAGCCGTTGTAGCAG
CAACCCCCAGGTTGTACTCGATTTTTCTACACGGCAAGCTTCGGCCCGGG
GCGTCCACGACCTCGGAAGCGGGCTTCCCGCTGAGGTGGCTCAAGGTCGA
GGTGCCCAAGCGCTTGTTCTCCCACTTCTACTTTTTCTGCCTTGCGTCGA
GCGCGCTGGTCATCGTCGACGTGCTCGTGTACGGCGGTTCTCTTGTCGTA
CGGAGGATCCAGGTGCGCGCCATTGAAGCAAAAGCCCCAGCTACCAAGCA
GCGAAACCGGTCTGAGAGGAAGGGGGCGTACTCCCGCAAACGCATGCAGT
AGGTTGTACTCGATTTTTCTACACGGCAAGCTTCGGCCCGGGGCGTCCAC
GACCTCGGAAGCGGGCTTCCCGCTGAGGTGGCTCAAGGTCGAGGTGCCCA
AGCGCTTGTTCTCCCACTTCTACTTTTTCTGCCTTGCGTCGAGCGCGCTG
GTCATCGTCGACGTGCTCGTGTACGGCGGTTCTCTTGTCGTACGGAGGAT
CCAGGTGCGCGCCATTGAAGCAAAAGCCCCAGCTACCAAGCAGCGAAACC
GGTCTGAGAGGAAGGGGGCGTACTCCCGCAAACGCATGCAGTAG
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