mRNA_E-fasciculatus_F_contig15952.4078.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15952.4078.1 vs. uniprot
Match: D7FWL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL8_ECTSI) HSP 1 Score: 179 bits (453), Expect = 5.380e-53 Identity = 126/183 (68.85%), Postives = 133/183 (72.68%), Query Frame = -2
Query: 9 AVAGGRSSRTASTGAGEGGVADGLVAPQPPPPLPVPATLEVLSGAFEGGRSAVPDQAASAAG--ENIIPAIIPAVVVGPVISRETADGSAAAEVEGXXXXXRSALAPSAAPATDVQRSTASRPLQGGSVPVSGVASGGMRSHDGRSGGGAPVPPVTSTVSVVQR----GAVTGGSAAVMPGSA 539
AVAGG SRTAST AGE GV D AP PP LPVP TL+ +SGA EG SAVPDQ A+ AG IIPA+IPAV VGPV+SRETADGSA XXXXXRSALAPSAAPATD STASRP GGSVPV V SGG+ SHDG SGGG V PV ST SVV+ G VTGGSAAVMPGSA
Sbjct: 60 AVAGGGPSRTASTDAGEAGVTDDHGAPHPP--LPVPDTLDAVSGALEGRGSAVPDQVAAVAGVYNIIIPAVIPAVAVGPVVSRETADGSAXXXXXXXXXXXRSALAPSAAPATDGPWSTASRPFPGGSVPVFRVVSGGLSSHDGPSGGGHHVVPVASTASVVRLPVFVGVVTGGSAAVMPGSA 240
BLAST of mRNA_E-fasciculatus_F_contig15952.4078.1 vs. uniprot
Match: A0A6H5LJC5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJC5_9PHAE) HSP 1 Score: 187 bits (474), Expect = 2.500e-52 Identity = 123/178 (69.10%), Postives = 131/178 (73.60%), Query Frame = -2
Query: 6 AVAGGRSSRTASTGAGEGGVADGLVAPQPPPPLPVPATLEVLSGAFEGGRSAVPDQAASAAGENIIPAIIPAVVVGPVISRETADGSAAAEVEGXXXXXRSALAPSAAPATDVQRSTASRPLQGGSVPVSGVASGGMRSHDGRSGGGAPVPPVTSTVSVVQRGAVTGGSAAVMPGSAG 539
AV G SRT ST GEG VA G AP PPPP VPATLE + GAFEG SAVP Q A+ AG N IP+IIP V VGPV+SRETADGSA XXXXXRSALAP A PAT+ QRST +RPLQ GS+PV GV SGGM SHDGRSGGG V PV ST S+VQ G VTGGSAA MPGSAG
Sbjct: 211 AVVRGGPSRTVSTDGGEGSVAAGHGAPHPPPP--VPATLETVPGAFEGCGSAVPQQVAAVAGVNFIPSIIPQVGVGPVVSRETADGSAXXXXXXXXXXXRSALAPLATPATEGQRSTVTRPLQEGSLPVLGVVSGGMPSHDGRSGGGNHVVPVASTASIVQSGVVTGGSAAAMPGSAG 386
BLAST of mRNA_E-fasciculatus_F_contig15952.4078.1 vs. uniprot
Match: D7FWK7_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK7_ECTSI) HSP 1 Score: 179 bits (453), Expect = 1.010e-48 Identity = 115/161 (71.43%), Postives = 124/161 (77.02%), Query Frame = -2
Query: 57 AVAGGRSSRTASTGAGEGGVADGLVAPQPPPPLPVPATLEVLSGAFEGGRSAVPDQAASAAGENIIPAIIPAVVVGPVISRETADGSAAAEVEGXXXXXRSALAPSAAPATDVQRSTASRPLQGGSVPVSGVASGGMRSHDGRSGGGAPVPPVTSTVSVVQ 539
AVAGG +SRT STGAG+GGVAD AP PPPPLP ATLE +SGAFEG SAVP Q A+ AG N+IP+IIP V VGP +SRETADGSA XXXXXRSALAP A PATDVQRST SRPLQ GSVPV GV SGG+ SH+GRSGG V PV ST SVVQ
Sbjct: 763 AVAGGGASRTVSTGAGKGGVADDHGAPHPPPPLP--ATLEPVSGAFEGRGSAVPQQVAAVAGVNVIPSIIPEVAVGPAVSRETADGSAXXXXXXXXXXXRSALAPLATPATDVQRSTVSRPLQEGSVPVLGVVSGGIPSHNGRSGGSHHVVPVASTASVVQ 921
BLAST of mRNA_E-fasciculatus_F_contig15952.4078.1 vs. uniprot
Match: D7FWL9_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL9_ECTSI) HSP 1 Score: 170 bits (431), Expect = 9.170e-46 Identity = 112/161 (69.57%), Postives = 119/161 (73.91%), Query Frame = -2
Query: 57 AVAGGRSSRTASTGAGEGGVADGLVAPQPPPPLPVPATLEVLSGAFEGGRSAVPDQAASAAGENIIPAIIPAVVVGPVISRETADGSAAAEVEGXXXXXRSALAPSAAPATDVQRSTASRPLQGGSVPVSGVASGGMRSHDGRSGGGAPVPPVTSTVSVVQ 539
AVAG SRT ST AG GGVAD AP PPPPLP ATLE +SGAFEG SAVP Q A+ AG N+IP+I P V VGP +SRETADGSA XXXXXRSALAP A PATDVQRST SRPLQ GSVPV GV SGG+ SH+GRSGG V PV ST SVVQ
Sbjct: 768 AVAGEGPSRTVSTDAGTGGVADDHGAPHPPPPLP--ATLEAVSGAFEGRGSAVPQQVAAVAGVNVIPSIFPEVAVGPAVSRETADGSAXXXXXXXXXXXRSALAPLATPATDVQRSTVSRPLQEGSVPVLGVVSGGIPSHNGRSGGDHHVVPVASTASVVQ 926
BLAST of mRNA_E-fasciculatus_F_contig15952.4078.1 vs. uniprot
Match: A0A6H5JHN5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHN5_9PHAE) HSP 1 Score: 157 bits (396), Expect = 4.660e-41 Identity = 104/149 (69.80%), Postives = 111/149 (74.50%), Query Frame = -2
Query: 99 AVAGGRSSRTASTGAGEGGVADGLVAPQPPPPLPVPATLEVLSGAFEGGRSAVPDQAASAAGEN-IIPAIIPAVVVGPVISRETADGSAA-AEVEGXXXXXRSALAPSAAPATDVQRSTASRPLQGGSVPVSGVASGGMRSHDGRSGGG 539
AVAGG SRTAST AGE GV DG AP PPPP VP TLE +SGA +GG SAVPDQ+A+ AGEN IIPAIIP VGPV+SRETADGS A AE EG RSA AP A PATD QRST SRPL GGS+PV V SGG+ SHDG SGGG
Sbjct: 777 AVAGGGPSRTASTEAGEAGVTDGHGAPHPPPP--VPDTLEAVSGAVQGGVSAVPDQSAAVAGENVIIPAIIPEAAVGPVVSRETADGSVATAEEEGGGG--RSAHAPLATPATDGQRSTVSRPLPGGSMPVLEVVSGGLPSHDGPSGGG 921
BLAST of mRNA_E-fasciculatus_F_contig15952.4078.1 vs. uniprot
Match: A0A6H5L224_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L224_9PHAE) HSP 1 Score: 107 bits (268), Expect = 5.230e-26 Identity = 89/148 (60.14%), Postives = 98/148 (66.22%), Query Frame = -2
Query: 99 AVAGGRSSRTASTGAGEGGVADGLVAPQPPPPLPVPATLEVLSGAFEGGRSAVPDQAASAAGENII-PAIIPAVVVGPVISRETADGSAAAEVEGXXXXXRSALAPSAAPATDVQRSTASRPLQGGSVPVSGVASGGMRSHDGRSGGG 539
AVAGG RTAST AGE GVADG AP P PVP TLE ++ + AG NII PA+IPAV V PV+S ETADGSA XXXXXRSALAPSA PATD +RST+SRP+ GGSVPV V SG + SHDG SGGG
Sbjct: 53 AVAGGGPFRTASTDAGETGVADGHGAPHPR--SPVPDTLEAVT---------------AVAGVNIIIPAVIPAVAVSPVVS-ETADGSAXXXXX-XXXXXRSALAPSATPATDGRRSTSSRPIPGGSVPVLRVVSGALPSHDGPSGGG 181 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15952.4078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15952.4078.1 >prot_E-fasciculatus_F_contig15952.4078.1 ID=prot_E-fasciculatus_F_contig15952.4078.1|Name=mRNA_E-fasciculatus_F_contig15952.4078.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=180bp PAPADPGITAADPPVTAPLWTTDTVLVTGGTGAPPPLRPSWDRIPPEATPback to top mRNA from alignment at E-fasciculatus_F_contig15952:638..1178+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15952.4078.1 ID=mRNA_E-fasciculatus_F_contig15952.4078.1|Name=mRNA_E-fasciculatus_F_contig15952.4078.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=541bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15952:638..1178+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15952:638..1178+ >mRNA_E-fasciculatus_F_contig15952.4078.1 ID=mRNA_E-fasciculatus_F_contig15952.4078.1|Name=mRNA_E-fasciculatus_F_contig15952.4078.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1080bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15952:638..1178+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |