mRNA_E-fasciculatus_F_contig15952.4078.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15952.4078.1
Unique NamemRNA_E-fasciculatus_F_contig15952.4078.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15952.4078.1 vs. uniprot
Match: D7FWL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL8_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 5.380e-53
Identity = 126/183 (68.85%), Postives = 133/183 (72.68%), Query Frame = -2
Query:    9 AVAGGRSSRTASTGAGEGGVADGLVAPQPPPPLPVPATLEVLSGAFEGGRSAVPDQAASAAG--ENIIPAIIPAVVVGPVISRETADGSAAAEVEGXXXXXRSALAPSAAPATDVQRSTASRPLQGGSVPVSGVASGGMRSHDGRSGGGAPVPPVTSTVSVVQR----GAVTGGSAAVMPGSA 539
            AVAGG  SRTAST AGE GV D   AP PP  LPVP TL+ +SGA EG  SAVPDQ A+ AG    IIPA+IPAV VGPV+SRETADGSA      XXXXXRSALAPSAAPATD   STASRP  GGSVPV  V SGG+ SHDG SGGG  V PV ST SVV+     G VTGGSAAVMPGSA
Sbjct:   60 AVAGGGPSRTASTDAGEAGVTDDHGAPHPP--LPVPDTLDAVSGALEGRGSAVPDQVAAVAGVYNIIIPAVIPAVAVGPVVSRETADGSAXXXXXXXXXXXRSALAPSAAPATDGPWSTASRPFPGGSVPVFRVVSGGLSSHDGPSGGGHHVVPVASTASVVRLPVFVGVVTGGSAAVMPGSA 240          
BLAST of mRNA_E-fasciculatus_F_contig15952.4078.1 vs. uniprot
Match: A0A6H5LJC5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJC5_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 2.500e-52
Identity = 123/178 (69.10%), Postives = 131/178 (73.60%), Query Frame = -2
Query:    6 AVAGGRSSRTASTGAGEGGVADGLVAPQPPPPLPVPATLEVLSGAFEGGRSAVPDQAASAAGENIIPAIIPAVVVGPVISRETADGSAAAEVEGXXXXXRSALAPSAAPATDVQRSTASRPLQGGSVPVSGVASGGMRSHDGRSGGGAPVPPVTSTVSVVQRGAVTGGSAAVMPGSAG 539
            AV  G  SRT ST  GEG VA G  AP PPPP  VPATLE + GAFEG  SAVP Q A+ AG N IP+IIP V VGPV+SRETADGSA      XXXXXRSALAP A PAT+ QRST +RPLQ GS+PV GV SGGM SHDGRSGGG  V PV ST S+VQ G VTGGSAA MPGSAG
Sbjct:  211 AVVRGGPSRTVSTDGGEGSVAAGHGAPHPPPP--VPATLETVPGAFEGCGSAVPQQVAAVAGVNFIPSIIPQVGVGPVVSRETADGSAXXXXXXXXXXXRSALAPLATPATEGQRSTVTRPLQEGSLPVLGVVSGGMPSHDGRSGGGNHVVPVASTASIVQSGVVTGGSAAAMPGSAG 386          
BLAST of mRNA_E-fasciculatus_F_contig15952.4078.1 vs. uniprot
Match: D7FWK7_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK7_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.010e-48
Identity = 115/161 (71.43%), Postives = 124/161 (77.02%), Query Frame = -2
Query:   57 AVAGGRSSRTASTGAGEGGVADGLVAPQPPPPLPVPATLEVLSGAFEGGRSAVPDQAASAAGENIIPAIIPAVVVGPVISRETADGSAAAEVEGXXXXXRSALAPSAAPATDVQRSTASRPLQGGSVPVSGVASGGMRSHDGRSGGGAPVPPVTSTVSVVQ 539
            AVAGG +SRT STGAG+GGVAD   AP PPPPLP  ATLE +SGAFEG  SAVP Q A+ AG N+IP+IIP V VGP +SRETADGSA      XXXXXRSALAP A PATDVQRST SRPLQ GSVPV GV SGG+ SH+GRSGG   V PV ST SVVQ
Sbjct:  763 AVAGGGASRTVSTGAGKGGVADDHGAPHPPPPLP--ATLEPVSGAFEGRGSAVPQQVAAVAGVNVIPSIIPEVAVGPAVSRETADGSAXXXXXXXXXXXRSALAPLATPATDVQRSTVSRPLQEGSVPVLGVVSGGIPSHNGRSGGSHHVVPVASTASVVQ 921          
BLAST of mRNA_E-fasciculatus_F_contig15952.4078.1 vs. uniprot
Match: D7FWL9_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWL9_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 9.170e-46
Identity = 112/161 (69.57%), Postives = 119/161 (73.91%), Query Frame = -2
Query:   57 AVAGGRSSRTASTGAGEGGVADGLVAPQPPPPLPVPATLEVLSGAFEGGRSAVPDQAASAAGENIIPAIIPAVVVGPVISRETADGSAAAEVEGXXXXXRSALAPSAAPATDVQRSTASRPLQGGSVPVSGVASGGMRSHDGRSGGGAPVPPVTSTVSVVQ 539
            AVAG   SRT ST AG GGVAD   AP PPPPLP  ATLE +SGAFEG  SAVP Q A+ AG N+IP+I P V VGP +SRETADGSA      XXXXXRSALAP A PATDVQRST SRPLQ GSVPV GV SGG+ SH+GRSGG   V PV ST SVVQ
Sbjct:  768 AVAGEGPSRTVSTDAGTGGVADDHGAPHPPPPLP--ATLEAVSGAFEGRGSAVPQQVAAVAGVNVIPSIFPEVAVGPAVSRETADGSAXXXXXXXXXXXRSALAPLATPATDVQRSTVSRPLQEGSVPVLGVVSGGIPSHNGRSGGDHHVVPVASTASVVQ 926          
BLAST of mRNA_E-fasciculatus_F_contig15952.4078.1 vs. uniprot
Match: A0A6H5JHN5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHN5_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 4.660e-41
Identity = 104/149 (69.80%), Postives = 111/149 (74.50%), Query Frame = -2
Query:   99 AVAGGRSSRTASTGAGEGGVADGLVAPQPPPPLPVPATLEVLSGAFEGGRSAVPDQAASAAGEN-IIPAIIPAVVVGPVISRETADGSAA-AEVEGXXXXXRSALAPSAAPATDVQRSTASRPLQGGSVPVSGVASGGMRSHDGRSGGG 539
            AVAGG  SRTAST AGE GV DG  AP PPPP  VP TLE +SGA +GG SAVPDQ+A+ AGEN IIPAIIP   VGPV+SRETADGS A AE EG     RSA AP A PATD QRST SRPL GGS+PV  V SGG+ SHDG SGGG
Sbjct:  777 AVAGGGPSRTASTEAGEAGVTDGHGAPHPPPP--VPDTLEAVSGAVQGGVSAVPDQSAAVAGENVIIPAIIPEAAVGPVVSRETADGSVATAEEEGGGG--RSAHAPLATPATDGQRSTVSRPLPGGSMPVLEVVSGGLPSHDGPSGGG 921          
BLAST of mRNA_E-fasciculatus_F_contig15952.4078.1 vs. uniprot
Match: A0A6H5L224_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L224_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.230e-26
Identity = 89/148 (60.14%), Postives = 98/148 (66.22%), Query Frame = -2
Query:   99 AVAGGRSSRTASTGAGEGGVADGLVAPQPPPPLPVPATLEVLSGAFEGGRSAVPDQAASAAGENII-PAIIPAVVVGPVISRETADGSAAAEVEGXXXXXRSALAPSAAPATDVQRSTASRPLQGGSVPVSGVASGGMRSHDGRSGGG 539
            AVAGG   RTAST AGE GVADG  AP P    PVP TLE ++               + AG NII PA+IPAV V PV+S ETADGSA      XXXXXRSALAPSA PATD +RST+SRP+ GGSVPV  V SG + SHDG SGGG
Sbjct:   53 AVAGGGPFRTASTDAGETGVADGHGAPHPR--SPVPDTLEAVT---------------AVAGVNIIIPAVIPAVAVSPVVS-ETADGSAXXXXX-XXXXXRSALAPSATPATDGRRSTSSRPIPGGSVPVLRVVSGALPSHDGPSGGG 181          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15952.4078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FWL8_ECTSI5.380e-5368.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LJC5_9PHAE2.500e-5269.10Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FWK7_ECTSI1.010e-4871.43Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FWL9_ECTSI9.170e-4669.57Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JHN5_9PHAE4.660e-4169.80Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5L224_9PHAE5.230e-2660.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15952contigE-fasciculatus_F_contig15952:638..1178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size542
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.1311662-CDS-E-fasciculatus_F_contig15952:637..11771622928064.1311662-CDS-E-fasciculatus_F_contig15952:637..1177Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15952 638..1177 +
1695995808.1072662-CDS-E-fasciculatus_F_contig15952:637..11771695995808.1072662-CDS-E-fasciculatus_F_contig15952:637..1177Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15952 638..1177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15952.4078.1prot_E-fasciculatus_F_contig15952.4078.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15952 638..1177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15952.4078.1

>prot_E-fasciculatus_F_contig15952.4078.1 ID=prot_E-fasciculatus_F_contig15952.4078.1|Name=mRNA_E-fasciculatus_F_contig15952.4078.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=180bp
PAPADPGITAADPPVTAPLWTTDTVLVTGGTGAPPPLRPSWDRIPPEATP
DTGTEPPWRGRDAVDLWTSVAGAADGARAERPPPPPPSTSAAALPSAVSL
EMTGPTTTAGMIAGMMFSPAADAAWSGTALLPPSKAPDSTSRVAGTGSGG
GGWGATRPSATPPSPAPVLAVRDDLPPATA
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mRNA from alignment at E-fasciculatus_F_contig15952:638..1178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15952.4078.1 ID=mRNA_E-fasciculatus_F_contig15952.4078.1|Name=mRNA_E-fasciculatus_F_contig15952.4078.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=541bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15952:638..1178+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGCACCAGCAGACCCGGGCATCACCGCCGCGGACCCCCCGGTAACAGC TCCTCTCTGGACTACCGATACGGTGCTTGTCACTGGAGGAACAGGAGCAC CACCGCCGCTGCGGCCGTCGTGGGACCGCATTCCTCCAGAAGCAACTCCT GACACGGGCACGGAACCTCCCTGGAGGGGTCGGGATGCCGTCGACCTCTG GACGTCGGTGGCTGGTGCCGCCGATGGAGCAAGAGCGGAACGTCCGCCTC CTCCTCCTCCCTCCACCTCAGCAGCAGCACTGCCGTCGGCTGTTTCCCTC GAAATGACCGGACCCACCACCACCGCCGGGATGATCGCCGGGATGATGTT TTCCCCTGCAGCGGACGCGGCCTGGTCTGGAACGGCGCTCCTGCCTCCTT CGAAAGCTCCAGACAGCACCTCGAGGGTAGCGGGCACCGGCAGCGGAGGC GGTGGTTGGGGCGCTACGAGGCCGTCGGCGACACCACCCTCTCCGGCGCC CGTGCTGGCCGTTCGGGACGACCTTCCCCCAGCCACTGCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15952:638..1178+

>mRNA_E-fasciculatus_F_contig15952.4078.1 ID=mRNA_E-fasciculatus_F_contig15952.4078.1|Name=mRNA_E-fasciculatus_F_contig15952.4078.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1080bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15952:638..1178+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGCACCAGCAGACCCGGGCATCACCGCCGCGGACCCCCCGGTAACAGC
TCCTCTCTGGACTACCGATACGGTGCTTGTCACTGGAGGAACAGGAGCAC
CACCGCCGCTGCGGCCGTCGTGGGACCGCATTCCTCCAGAAGCAACTCCT
GACACGGGCACGGAACCTCCCTGGAGGGGTCGGGATGCCGTCGACCTCTG
GACGTCGGTGGCTGGTGCCGCCGATGGAGCAAGAGCGGAACGTCCGCCTC
CTCCTCCTCCCTCCACCTCAGCAGCAGCACTGCCGTCGGCTGTTTCCCTC
GAAATGACCGGACCCACCACCACCGCCGGGATGATCGCCGGGATGATGTT
TTCCCCTGCAGCGGACGCGGCCTGGTCTGGAACGGCGCTCCTGCCTCCTT
CGAAAGCTCCAGACAGCACCTCGAGGGTAGCGGGCACCGGCAGCGGAGGC
GGTGGTTGGGGCGCTACGAGGCCGTCGGCGACACCACCCTCTCCGGCGCC
CGTGCTGGCCGTTCGGGACGACCTTCCCCCAGCCACTGCTCCCGCACCAG
CAGACCCGGGCATCACCGCCGCGGACCCCCCGGTAACAGCTCCTCTCTGG
ACTACCGATACGGTGCTTGTCACTGGAGGAACAGGAGCACCACCGCCGCT
GCGGCCGTCGTGGGACCGCATTCCTCCAGAAGCAACTCCTGACACGGGCA
CGGAACCTCCCTGGAGGGGTCGGGATGCCGTCGACCTCTGGACGTCGGTG
GCTGGTGCCGCCGATGGAGCAAGAGCGGAACGTCCGCCTCCTCCTCCTCC
CTCCACCTCAGCAGCAGCACTGCCGTCGGCTGTTTCCCTCGAAATGACCG
GACCCACCACCACCGCCGGGATGATCGCCGGGATGATGTTTTCCCCTGCA
GCGGACGCGGCCTGGTCTGGAACGGCGCTCCTGCCTCCTTCGAAAGCTCC
AGACAGCACCTCGAGGGTAGCGGGCACCGGCAGCGGAGGCGGTGGTTGGG
GCGCTACGAGGCCGTCGGCGACACCACCCTCTCCGGCGCCCGTGCTGGCC
GTTCGGGACGACCTTCCCCCAGCCACTGCT
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