prot_E-fasciculatus_F_contig15934.4064.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig15934.4064.1
Unique Nameprot_E-fasciculatus_F_contig15934.4064.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length77
Homology
BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: D8LFE0_ECTSI (DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE0_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 2.180e-40
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0
Query:    4 RYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 77
            RYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKA IGKIAQEPD GISIRFPRLLREREDKDPEQATTSDQ+
Sbjct:  941 RYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAAIGKIAQEPDRGISIRFPRLLREREDKDPEQATTSDQI 1014          
BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: A0A836CMS0_9STRA (DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMS0_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.740e-25
Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 0
Query:    5 YYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 77
            Y+NV D++ PDVWL P KVWEV+ ADLSKSPVHKA +GK+  +P  GISIRFPRL+RER+DK PE AT++DQ+
Sbjct:  548 YFNVGDTIEPDVWLEPCKVWEVRAADLSKSPVHKAAVGKV--DPVRGISIRFPRLVRERDDKAPESATSADQI 618          
BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: V4SB42_CITCL (DNA ligase n=6 Tax=Citrus TaxID=2706 RepID=V4SB42_CITCL)

HSP 1 Score: 102 bits (254), Expect = 1.190e-23
Identity = 49/75 (65.33%), Postives = 60/75 (80.00%), Query Frame = 0
Query:    3 RRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 77
            R YY  AD+LSPDVW  P +VWEVK ADL+ SPVH+A IG +  +PD GIS+RFPRL+R REDK PEQA++S+QV
Sbjct:  661 RPYYRFADTLSPDVWFEPTEVWEVKAADLTISPVHRAAIGVV--DPDKGISLRFPRLIRVREDKTPEQASSSEQV 733          
BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: D7KE22_ARALL (DNA ligase n=2 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=D7KE22_ARALL)

HSP 1 Score: 102 bits (253), Expect = 1.570e-23
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 0
Query:    3 RRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 77
            ++YY V D L+PDVWL P +VWEVK ADL+ SPVH+A IG +  +PD GIS+RFPRL+R R+DK+PE+AT+SDQ+
Sbjct:  529 KQYYQVDDGLNPDVWLEPTEVWEVKAADLTISPVHRAAIGIV--DPDKGISLRFPRLVRVRKDKNPEEATSSDQI 601          
BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: A0A1Q3C007_CEPFO (DNA ligase n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3C007_CEPFO)

HSP 1 Score: 101 bits (252), Expect = 2.220e-23
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 0
Query:    5 YYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 77
            YY  AD+++PDVW  P +VWEVK ADL+ SPVH+A IG +  +PD GIS+RFPRLLR REDK PEQA++SDQV
Sbjct:  661 YYRYADTINPDVWFEPTEVWEVKAADLTISPVHRAAIGVV--DPDKGISLRFPRLLRVREDKTPEQASSSDQV 731          
BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: A0A452YKZ3_AEGTS (DNA_ligase_A_C domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YKZ3_AEGTS)

HSP 1 Score: 95.1 bits (235), Expect = 2.940e-23
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 0
Query:    3 RRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 77
            + YY  AD+  PDVW  P +VWEVK ADLS SPVH+A  G +  +P+ GIS+RFPRLLR R+DK+PE ATT++QV
Sbjct:   56 KAYYRFADTTDPDVWFEPSEVWEVKAADLSISPVHRAANGIV--DPNKGISLRFPRLLRVRDDKNPEHATTAEQV 128          
BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: M4DQ59_BRARP (DNA ligase n=19 Tax=Brassicaceae TaxID=3700 RepID=M4DQ59_BRARP)

HSP 1 Score: 101 bits (251), Expect = 3.020e-23
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 0
Query:    3 RRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 77
            ++YY V DSL+PDVW  P +VWEVK ADL+ SPVH+A  G +  +PD GIS+RFPRLLR REDK PE+AT+S+Q+
Sbjct:  639 KQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIV--DPDKGISLRFPRLLRVREDKKPEEATSSEQI 711          
BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: DNLI1_ARATH (DNA ligase 1 n=6 Tax=Camelineae TaxID=980083 RepID=DNLI1_ARATH)

HSP 1 Score: 101 bits (251), Expect = 3.030e-23
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 0
Query:    3 RRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 77
            ++YY V DSL+PDVW  P +VWEVK ADL+ SPVH+A  G +  +PD GIS+RFPRLLR REDK PE+AT+S+Q+
Sbjct:  697 KQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIV--DPDKGISLRFPRLLRVREDKKPEEATSSEQI 769          
BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: A0A4D9B967_SALSN (DNA ligase n=5 Tax=Salvia TaxID=21880 RepID=A0A4D9B967_SALSN)

HSP 1 Score: 101 bits (251), Expect = 3.040e-23
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 0
Query:    5 YYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 77
            YY   D+LSPDVW  P +VWEVK ADL+ SPVH+A +G +  +PD GIS+RFPRLLR REDK+PEQA++SD V
Sbjct:  716 YYRYGDTLSPDVWFEPSEVWEVKAADLTISPVHRAAVGTV--DPDKGISLRFPRLLRVREDKNPEQASSSDMV 786          
BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: A0A5S9T8D3_ARATH (DNA ligase n=2 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A5S9T8D3_ARATH)

HSP 1 Score: 101 bits (251), Expect = 3.060e-23
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 0
Query:    3 RRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 77
            ++YY V DSL+PDVW  P +VWEVK ADL+ SPVH+A  G +  +PD GIS+RFPRLLR REDK PE+AT+S+Q+
Sbjct:  617 KQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIV--DPDKGISLRFPRLLRVREDKKPEEATSSEQI 689          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFE0_ECTSI2.180e-4095.95DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A836CMS0_9STRA2.740e-2567.12DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303... [more]
V4SB42_CITCL1.190e-2365.33DNA ligase n=6 Tax=Citrus TaxID=2706 RepID=V4SB42_... [more]
D7KE22_ARALL1.570e-2362.67DNA ligase n=2 Tax=Arabidopsis lyrata subsp. lyrat... [more]
A0A1Q3C007_CEPFO2.220e-2365.75DNA ligase n=1 Tax=Cephalotus follicularis TaxID=3... [more]
A0A452YKZ3_AEGTS2.940e-2360.00DNA_ligase_A_C domain-containing protein n=1 Tax=A... [more]
M4DQ59_BRARP3.020e-2362.67DNA ligase n=19 Tax=Brassicaceae TaxID=3700 RepID=... [more]
DNLI1_ARATH3.030e-2362.67DNA ligase 1 n=6 Tax=Camelineae TaxID=980083 RepID... [more]
A0A4D9B967_SALSN3.040e-2364.38DNA ligase n=5 Tax=Salvia TaxID=21880 RepID=A0A4D9... [more]
A0A5S9T8D3_ARATH3.060e-2362.67DNA ligase n=2 Tax=Arabidopsis thaliana TaxID=3702... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..77
e-value: 2.6E-24
score: 88.1
NoneNo IPR availablePANTHERPTHR45674FAMILY NOT NAMEDcoord: 3..77
NoneNo IPR availablePANTHERPTHR45674:SF4DNA LIGASE 1coord: 3..77
IPR012309DNA ligase, ATP-dependent, C-terminalPFAMPF04679DNA_ligase_A_Ccoord: 10..66
e-value: 9.0E-11
score: 42.2
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 4..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15934contigE-fasciculatus_F_contig15934:724..1207 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15934.4064.1mRNA_E-fasciculatus_F_contig15934.4064.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig15934 724..1207 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig15934.4064.1 ID=prot_E-fasciculatus_F_contig15934.4064.1|Name=mRNA_E-fasciculatus_F_contig15934.4064.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=77bp
MARRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDC
GISIRFPRLLREREDKDPEQATTSDQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR012309DNA_ligase_ATP-dep_C