mRNA_E-fasciculatus_F_contig15934.4064.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15934.4064.1
Unique NamemRNA_E-fasciculatus_F_contig15934.4064.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: D8LFE0_ECTSI (DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE0_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 2.180e-40
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 1 
Query:   10 RYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 231
            RYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKA IGKIAQEPD GISIRFPRLLREREDKDPEQATTSDQ+
Sbjct:  941 RYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAAIGKIAQEPDRGISIRFPRLLREREDKDPEQATTSDQI 1014
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BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: A0A836CMS0_9STRA (DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMS0_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.740e-25
Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:   13 YYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 231
            Y+NV D++ PDVWL P KVWEV+ ADLSKSPVHKA +GK+  +P  GISIRFPRL+RER+DK PE AT++DQ+
Sbjct:  548 YFNVGDTIEPDVWLEPCKVWEVRAADLSKSPVHKAAVGKV--DPVRGISIRFPRLVRERDDKAPESATSADQI 618
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BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: V4SB42_CITCL (DNA ligase n=6 Tax=Citrus TaxID=2706 RepID=V4SB42_CITCL)

HSP 1 Score: 102 bits (254), Expect = 1.190e-23
Identity = 49/75 (65.33%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    7 RRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 231
            R YY  AD+LSPDVW  P +VWEVK ADL+ SPVH+A IG +  +PD GIS+RFPRL+R REDK PEQA++S+QV
Sbjct:  661 RPYYRFADTLSPDVWFEPTEVWEVKAADLTISPVHRAAIGVV--DPDKGISLRFPRLIRVREDKTPEQASSSEQV 733
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BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: D7KE22_ARALL (DNA ligase n=2 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=D7KE22_ARALL)

HSP 1 Score: 102 bits (253), Expect = 1.570e-23
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    7 RRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 231
            ++YY V D L+PDVWL P +VWEVK ADL+ SPVH+A IG +  +PD GIS+RFPRL+R R+DK+PE+AT+SDQ+
Sbjct:  529 KQYYQVDDGLNPDVWLEPTEVWEVKAADLTISPVHRAAIGIV--DPDKGISLRFPRLVRVRKDKNPEEATSSDQI 601
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BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: A0A1Q3C007_CEPFO (DNA ligase n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3C007_CEPFO)

HSP 1 Score: 101 bits (252), Expect = 2.220e-23
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:   13 YYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 231
            YY  AD+++PDVW  P +VWEVK ADL+ SPVH+A IG +  +PD GIS+RFPRLLR REDK PEQA++SDQV
Sbjct:  661 YYRYADTINPDVWFEPTEVWEVKAADLTISPVHRAAIGVV--DPDKGISLRFPRLLRVREDKTPEQASSSDQV 731
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BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: A0A452YKZ3_AEGTS (DNA_ligase_A_C domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YKZ3_AEGTS)

HSP 1 Score: 95.1 bits (235), Expect = 2.940e-23
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    7 RRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 231
            + YY  AD+  PDVW  P +VWEVK ADLS SPVH+A  G +  +P+ GIS+RFPRLLR R+DK+PE ATT++QV
Sbjct:   56 KAYYRFADTTDPDVWFEPSEVWEVKAADLSISPVHRAANGIV--DPNKGISLRFPRLLRVRDDKNPEHATTAEQV 128
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BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: M4DQ59_BRARP (DNA ligase n=19 Tax=Brassicaceae TaxID=3700 RepID=M4DQ59_BRARP)

HSP 1 Score: 101 bits (251), Expect = 3.020e-23
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    7 RRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 231
            ++YY V DSL+PDVW  P +VWEVK ADL+ SPVH+A  G +  +PD GIS+RFPRLLR REDK PE+AT+S+Q+
Sbjct:  639 KQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIV--DPDKGISLRFPRLLRVREDKKPEEATSSEQI 711
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BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: DNLI1_ARATH (DNA ligase 1 n=6 Tax=Camelineae TaxID=980083 RepID=DNLI1_ARATH)

HSP 1 Score: 101 bits (251), Expect = 3.030e-23
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    7 RRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 231
            ++YY V DSL+PDVW  P +VWEVK ADL+ SPVH+A  G +  +PD GIS+RFPRLLR REDK PE+AT+S+Q+
Sbjct:  697 KQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIV--DPDKGISLRFPRLLRVREDKKPEEATSSEQI 769
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BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: A0A4D9B967_SALSN (DNA ligase n=5 Tax=Salvia TaxID=21880 RepID=A0A4D9B967_SALSN)

HSP 1 Score: 101 bits (251), Expect = 3.040e-23
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:   13 YYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 231
            YY   D+LSPDVW  P +VWEVK ADL+ SPVH+A +G +  +PD GIS+RFPRLLR REDK+PEQA++SD V
Sbjct:  716 YYRYGDTLSPDVWFEPSEVWEVKAADLTISPVHRAAVGTV--DPDKGISLRFPRLLRVREDKNPEQASSSDMV 786
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BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Match: A0A5S9T8D3_ARATH (DNA ligase n=2 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A5S9T8D3_ARATH)

HSP 1 Score: 101 bits (251), Expect = 3.060e-23
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    7 RRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDCGISIRFPRLLREREDKDPEQATTSDQV 231
            ++YY V DSL+PDVW  P +VWEVK ADL+ SPVH+A  G +  +PD GIS+RFPRLLR REDK PE+AT+S+Q+
Sbjct:  617 KQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIV--DPDKGISLRFPRLLRVREDKKPEEATSSEQI 689
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15934.4064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFE0_ECTSI2.180e-4095.95DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A836CMS0_9STRA2.740e-2567.12DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303... [more]
V4SB42_CITCL1.190e-2365.33DNA ligase n=6 Tax=Citrus TaxID=2706 RepID=V4SB42_... [more]
D7KE22_ARALL1.570e-2362.67DNA ligase n=2 Tax=Arabidopsis lyrata subsp. lyrat... [more]
A0A1Q3C007_CEPFO2.220e-2365.75DNA ligase n=1 Tax=Cephalotus follicularis TaxID=3... [more]
A0A452YKZ3_AEGTS2.940e-2360.00DNA_ligase_A_C domain-containing protein n=1 Tax=A... [more]
M4DQ59_BRARP3.020e-2362.67DNA ligase n=19 Tax=Brassicaceae TaxID=3700 RepID=... [more]
DNLI1_ARATH3.030e-2362.67DNA ligase 1 n=6 Tax=Camelineae TaxID=980083 RepID... [more]
A0A4D9B967_SALSN3.040e-2364.38DNA ligase n=5 Tax=Salvia TaxID=21880 RepID=A0A4D9... [more]
A0A5S9T8D3_ARATH3.060e-2362.67DNA ligase n=2 Tax=Arabidopsis thaliana TaxID=3702... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15934contigE-fasciculatus_F_contig15934:724..1207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue5.1e-34
Seed eggNOG ortholog2880.D8LFE0
Preferred nameLIG1
KEGG rclassRC00005
KEGG koko:K10747
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
GOsGO:0000012,GO:0000228,GO:0000278,GO:0000302,GO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006297,GO:0006298,GO:0006302,GO:0006303,GO:0006304,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009636,GO:0009653,GO:0009987,GO:0010035,GO:0016043,GO:0016070,GO:0016874,GO:0016886,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0032502,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0035510,GO:0035753,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044728,GO:0044786,GO:0046483,GO:0046677,GO:0048856,GO:0050896,GO:0051103,GO:0051276,GO:0051716,GO:0070013,GO:0070988,GO:0071704,GO:0071840,GO:0080111,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902969,GO:1903047,GO:1903461
EggNOG free text desc.DNA ligase (ATP) activity
EggNOG OGsCOG1793@1,KOG0967@2759
EC6.5.1.1,6.5.1.6,6.5.1.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928062.6883159-CDS-E-fasciculatus_F_contig15934:723..8881622928062.6883159-CDS-E-fasciculatus_F_contig15934:723..888Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15934 724..888 -
1695995807.5617414-CDS-E-fasciculatus_F_contig15934:723..8881695995807.5617414-CDS-E-fasciculatus_F_contig15934:723..888Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15934 724..888 -
1622928062.7042782-CDS-E-fasciculatus_F_contig15934:1141..12071622928062.7042782-CDS-E-fasciculatus_F_contig15934:1141..1207Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15934 1142..1207 -
1695995807.5751781-CDS-E-fasciculatus_F_contig15934:1141..12071695995807.5751781-CDS-E-fasciculatus_F_contig15934:1141..1207Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15934 1142..1207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15934.4064.1prot_E-fasciculatus_F_contig15934.4064.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15934 724..1207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15934.4064.1

>prot_E-fasciculatus_F_contig15934.4064.1 ID=prot_E-fasciculatus_F_contig15934.4064.1|Name=mRNA_E-fasciculatus_F_contig15934.4064.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=77bp
MARRYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAVIGKIAQEPDC
GISIRFPRLLREREDKDPEQATTSDQV
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mRNA from alignment at E-fasciculatus_F_contig15934:724..1207-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15934.4064.1 ID=mRNA_E-fasciculatus_F_contig15934.4064.1|Name=mRNA_E-fasciculatus_F_contig15934.4064.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=484bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15934:724..1207- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCACGCAGGTACTACAACGTTGCGGACAGCCTCTCGCCGGACGTCTG
GCTGGCACCTCACAAGGTACGTATGAGATGGTCGTTTAGCATACACACAA
CGAGAAATCGATTCATCGCTGTGGGTCGCACGCTCGAGCTCTCGTTACGT
TCGTCGGTCTTATCCAGAGTGATGGGAGCCATGTTTGTTGGCAAGGTCAA
CCTTTCAACCTTTCTTGCGATACACCTGCTAGATGGCCTTGGCCGGCCCT
CCGTTGGCCCGCGTGTAGACGACACCACCCGCGATTAGTCCCGACCCCAC
ACGGCCCTGCACGACACAGGTGTGGGAGGTGAAGTGCGCCGACCTGTCCA
AGTCTCCCGTGCACAAGGCCGTCATCGGGAAAATCGCGCAGGAGCCCGAC
TGCGGCATCAGCATCCGCTTCCCCCGTCTGTTGCGGGAGAGGGAAGACAA
GGACCCCGAGCAGGCGACCACGTCGGACCAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15934:724..1207-

>mRNA_E-fasciculatus_F_contig15934.4064.1 ID=mRNA_E-fasciculatus_F_contig15934.4064.1|Name=mRNA_E-fasciculatus_F_contig15934.4064.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=462bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15934:724..1207- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCACGCAGGTACTACAACGTTGCGGACAGCCTCTCGCCGGACGTCTG
GCTGGCACCTCACAAGATGGCACGCAGGTACTACAACGTTGCGGACAGCC
TCTCGCCGGACGTCTGGCTGGCACCTCACAAGGTGTGGGAGGTGAAGTGC
GCCGACCTGTCCAAGTCTCCCGTGCACAAGGCCGTCATCGGGAAAATCGC
GCAGGAGCCCGACTGCGGCATCAGCATCCGCTTCCCCCGTCTGTTGCGGG
AGAGGGAAGACAAGGACCCCGAGCAGGCGACCACGTCGGACCAGGTGGTG
TGGGAGGTGAAGTGCGCCGACCTGTCCAAGTCTCCCGTGCACAAGGCCGT
CATCGGGAAAATCGCGCAGGAGCCCGACTGCGGCATCAGCATCCGCTTCC
CCCGTCTGTTGCGGGAGAGGGAAGACAAGGACCCCGAGCAGGCGACCACG
TCGGACCAGGTG
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