mRNA_E-fasciculatus_F_contig15870.4028.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15870.4028.1
Unique NamemRNA_E-fasciculatus_F_contig15870.4028.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15870.4028.1 vs. uniprot
Match: D7G1T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T3_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 1.610e-80
Identity = 127/153 (83.01%), Postives = 132/153 (86.27%), Query Frame = 1
Query:    1 MSGRISGPAGKQDAHGDAVPERGADGDGATAAGGGPPDGNSFVGLMGEDDSGTWIESQNVDGLEILVKDDLRLWPDRLWVNDRGFDREGNFVYGNQRDVPYKMRRVAAGGPLEWTLGARHRTKEAYAEKMSAIGVTPGQRLGPPVRRRPAAGT 459
            M G ISGP GKQD  G AVPERGA   G  AAGGG   G SFVGLMGEDDSGTW+ESQNVDGLEILVKDDLRLWPDRLWVNDRGFDR+GNFVYGNQRDVPYKMRRV AGGPLEWTLGARHRT++ YAE+MSAIGVTPGQRLGPPVR    AGT
Sbjct:    1 MPGGISGP-GKQDTDGGAVPERGA---GEDAAGGG---GKSFVGLMGEDDSGTWVESQNVDGLEILVKDDLRLWPDRLWVNDRGFDRQGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYAERMSAIGVTPGQRLGPPVRIAAPAGT 146          
BLAST of mRNA_E-fasciculatus_F_contig15870.4028.1 vs. uniprot
Match: A0A6H5K9Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q8_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 3.130e-75
Identity = 130/163 (79.75%), Postives = 136/163 (83.44%), Query Frame = 1
Query:    1 MSGRISGPAGKQDAHGDAVPERGADGDGATAAGGGPPDGNSFVGLMGEDDSGTWIESQNVDGLEILVKDDLRLWPDRLWVNDRGFDREGNFVYGNQRDVPYKMRRVAAGGPLEWTLGARHRTKEAYAEKMSAIGVTPGQRLGPPVRRRPAAGTPAGTGSGGGG 489
            M G ISGP GKQDA+G AVPERGA   G  AAGGG   G SFVGLMG+DDSGTW+ESQNVDGLEILVKDDLRLWPD LWVNDRGFDR+GNFVYGNQRDVPYKMRRV AGGPLEWTLGARHRT++ YAEKMSAIGVT GQRL PPVR       PAGTG  GGG
Sbjct:  269 MPGGISGP-GKQDANGGAVPERGA---GEDAAGGG---GKSFVGLMGKDDSGTWVESQNVDGLEILVKDDLRLWPDSLWVNDRGFDRDGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYAEKMSAIGVTLGQRLRPPVR----VAAPAGTGGTGGG 420          
BLAST of mRNA_E-fasciculatus_F_contig15870.4028.1 vs. uniprot
Match: A0A7S2A9U5_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9U5_TRICV)

HSP 1 Score: 87.8 bits (216), Expect = 1.730e-18
Identity = 45/103 (43.69%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  163 IESQNVDGLEILVKDDLRLWPDRLWVNDRGFDREG-NFVYGNQRDVPYKMRRVAA----------------------GGPLEWTLGARHRTKEAYAEKMSAIG 402
            + S  + G +I V+D+L LW   LW+NDRG+D EG +FVYGNQR VPY+M RV                         G L+WTLG RHRT+  Y E++ AIG
Sbjct:   92 VPSLMIPGAKIRVRDELSLWDGALWINDRGYDPEGGDFVYGNQRGVPYEMGRVTTFLRGDGDGEGSPPLFATERTVVNGDLKWTLGPRHRTEGLYRERVEAIG 194          
BLAST of mRNA_E-fasciculatus_F_contig15870.4028.1 vs. uniprot
Match: B7G7Q1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7Q1_PHATC)

HSP 1 Score: 87.0 bits (214), Expect = 2.080e-17
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  163 IESQNVDGLEILVKDDLRLWPDRLWVNDRGFDREG-NFVYGNQRDVPYKMRRVA----------AGGPLEWTLGARHRTKEAYAEKMSAIG 402
            +ESQ + G +IL+KD L LWPD LW++DRGFD +   F+YGNQR VPY++ RV               L WTLG   R++  Y +KM A+G
Sbjct:  218 VESQMMPGQKILIKDQLSLWPDELWIHDRGFDPDTMRFIYGNQRGVPYRLERVTDIALNNGRTIVQEDLAWTLGPDFRSEGEYQDKMVAVG 308          
BLAST of mRNA_E-fasciculatus_F_contig15870.4028.1 vs. uniprot
Match: K0TER5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER5_THAOC)

HSP 1 Score: 84.3 bits (207), Expect = 3.870e-16
Identity = 46/119 (38.66%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  121 SFVGLMGEDDSGTWIESQN-VDGLEILVKDDLRLWPDRLWVNDRGFDREGN-----------FVYGNQRDVPYKMRRVA--------------AGGPLEWTLGARHRTKEAYAEKMSAI 399
            SF   M    SG  ++S + + G  IL+KD+L LW D+ W+NDRG+D +G            FVYGN+R VPYK+ RV+                G L+WTLG  +RT   Y  K+ AI
Sbjct:  271 SFHATMEAGSSGAIVDSISMIPGQRILIKDELSLWEDKFWINDRGYDPDGETDSMNENQDMPFVYGNRRGVPYKLERVSHIVSTAGAELQVAPVSGELQWTLGGSYRTPGEYEAKLKAI 389          
BLAST of mRNA_E-fasciculatus_F_contig15870.4028.1 vs. uniprot
Match: A0A7S2SCY1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCY1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.910e-15
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  151 SGTWIESQNVDGLEILVKDDLRLWPDRLWVNDRGFDREG--NFVYGNQRDVPYKMRRVAAGG--------------PLEWTLGARHRTKEAYAEKMSAI 399
            +GT + SQ + G+ I ++D+L LW +  W+NDRG D +   +F+YGNQR +PYK++RV                   L WTLG  HRT+  Y + M+ I
Sbjct:  156 NGTTVASQVIPGMYINIRDELSLWKNEFWINDRGLDPQNVSSFIYGNQRGIPYKLKRVTQNNNIFRQWKPRMIHDPKLAWTLGPDHRTEFDYQQMMNEI 254          
BLAST of mRNA_E-fasciculatus_F_contig15870.4028.1 vs. uniprot
Match: A0A7S4HD69_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HD69_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 1.590e-13
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1
Query:  163 IESQNVDGLEILVKDDLRLWPDRLWVNDRGFDREGNFVYGNQRDVPYKMRR 315
            +ES  + G+ I+V+DD+ LW D LWVNDRG D EGN++YGN RDVPYKM R
Sbjct:   86 VESARM-GMPIVVRDDVTLWSDALWVNDRGADMEGNYLYGNVRDVPYKMDR 135          
BLAST of mRNA_E-fasciculatus_F_contig15870.4028.1 vs. uniprot
Match: A0A5J4Z4Z5_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4Z5_PORPP)

HSP 1 Score: 77.0 bits (188), Expect = 1.990e-13
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1
Query:  193 ILVKDDLRLWPDRLWVNDRGFDREGNFVYGNQRDVPYKMRRVAAGGPLEWT 345
            ILVKDDL L  + LWVNDRGFD  G+FVYGN+R VPYKM+R +    LEWT
Sbjct:  428 ILVKDDLILTGNELWVNDRGFDENGHFVYGNRRGVPYKMKRTSCNPHLEWT 478          
BLAST of mRNA_E-fasciculatus_F_contig15870.4028.1 vs. uniprot
Match: A0A7S2V3D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3D9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.790e-12
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query:  163 IESQNVDGLEILVKDDLRLWPDRLWVNDRGFDREGN-FVYGNQRDVPYKMRRVAAGGPLEWTLGARHRTKEAYAEKMSAI 399
            I+S+ V G+ + V DDL L   RLWVNDRGFD++    +YGN R  PY++ R      L WTL   +++KE    K  A+
Sbjct:   41 IDSEMVPGMRVKVLDDLWLDESRLWVNDRGFDKQTKCLLYGNHRGKPYQLERATHQNSLAWTLSENYQSKEKIRLKQLAL 120          
BLAST of mRNA_E-fasciculatus_F_contig15870.4028.1 vs. uniprot
Match: A0A7R9ZKH3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKH3_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.350e-12
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 1
Query:  163 IESQNVDGLEILVKDDLRLWPDRLWVNDRGFDREGN-FVYGNQRDVPYKMRRVAA--GGP-----------------------LEWTLGARHRTKEAYAEKMSAIG 402
            +ESQ + G +I + D L L+ D  ++NDRGF+ E N ++YGNQR VPY++ RVA   GG                        L WTLG  HRT E Y  K+  IG
Sbjct:  252 VESQMMPGQKIKILDQLSLYDDVFYINDRGFNPETNEYIYGNQRSVPYRLERVAKWKGGDADEDNDADDSVVTMVGRDVVNESLAWTLGDAHRTPEEYKSKIDEIG 357          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15870.4028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G1T3_ECTSI1.610e-8083.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9Q8_9PHAE3.130e-7579.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2A9U5_TRICV1.730e-1843.69Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
B7G7Q1_PHATC2.080e-1746.15Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
K0TER5_THAOC3.870e-1638.66Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2SCY1_9STRA3.910e-1538.38Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4HD69_9EUKA1.590e-1362.75Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A5J4Z4Z5_PORPP1.990e-1366.67Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A7S2V3D9_9STRA1.790e-1242.50Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7R9ZKH3_9STRA3.350e-1239.62Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15870contigE-fasciculatus_F_contig15870:1750..2241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.7
Seed ortholog evalue1.5e-62
Seed eggNOG ortholog2880.D7G1T3
EggNOG free text desc.CpeT/CpcT family (DUF1001)
EggNOG OGs2CBDP@1,2SAUK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_004240.1
Exons1
Model size492
Cds size492
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928054.5703344-CDS-E-fasciculatus_F_contig15870:1749..22411622928054.5703344-CDS-E-fasciculatus_F_contig15870:1749..2241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15870 1750..2241 -
1695995805.2479353-CDS-E-fasciculatus_F_contig15870:1749..22411695995805.2479353-CDS-E-fasciculatus_F_contig15870:1749..2241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15870 1750..2241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15870.4028.1prot_E-fasciculatus_F_contig15870.4028.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15870 1750..2241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15870.4028.1

>prot_E-fasciculatus_F_contig15870.4028.1 ID=prot_E-fasciculatus_F_contig15870.4028.1|Name=mRNA_E-fasciculatus_F_contig15870.4028.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=164bp
MSGRISGPAGKQDAHGDAVPERGADGDGATAAGGGPPDGNSFVGLMGEDD
SGTWIESQNVDGLEILVKDDLRLWPDRLWVNDRGFDREGNFVYGNQRDVP
YKMRRVAAGGPLEWTLGARHRTKEAYAEKMSAIGVTPGQRLGPPVRRRPA
AGTPAGTGSGGGG*
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mRNA from alignment at E-fasciculatus_F_contig15870:1750..2241-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15870.4028.1 ID=mRNA_E-fasciculatus_F_contig15870.4028.1|Name=mRNA_E-fasciculatus_F_contig15870.4028.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=492bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15870:1750..2241- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCGGGAGAATTTCAGGGCCGGCGGGGAAACAGGACGCGCACGGGGA TGCAGTTCCCGAGCGAGGGGCGGATGGAGACGGCGCAACAGCGGCGGGAG GGGGGCCTCCTGATGGGAATTCCTTCGTCGGGCTGATGGGGGAGGACGAC AGCGGGACGTGGATCGAGTCGCAGAACGTCGACGGCCTCGAGATCTTGGT CAAGGACGACCTCAGGCTGTGGCCGGACCGCCTGTGGGTCAACGACCGCG GCTTCGACCGAGAGGGGAACTTCGTCTACGGGAACCAGCGCGACGTGCCC TACAAGATGCGAAGGGTCGCCGCGGGGGGACCCCTGGAGTGGACCCTGGG GGCGCGGCATCGGACCAAGGAAGCGTACGCCGAAAAAATGTCCGCCATCG GGGTGACCCCGGGGCAGCGGCTAGGACCCCCCGTTAGGCGACGACCTGCT GCCGGCACACCGGCCGGCACGGGCAGCGGCGGCGGCGGCTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15870:1750..2241-

>mRNA_E-fasciculatus_F_contig15870.4028.1 ID=mRNA_E-fasciculatus_F_contig15870.4028.1|Name=mRNA_E-fasciculatus_F_contig15870.4028.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15870:1750..2241- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCGGGAGAATTTCAGGGCCGGCGGGGAAACAGGACGCGCACGGGGA
TGCAGTTCCCGAGCGAGGGGCGGATGGAGACGGCGCAACAGCGGCGGGAG
GGGGGCCTCCTGATGGGAATTCCTTCGTCGGGCTGATGGGGGAGGACGAC
AGCGGGACGTGGATCGAGTCGCAGAACGTCGACGGCCTCGAGATCTTGGT
CAAGGACGACCTCAGGCTGTGGCCGGACCGCCTGTGGGTCAACGACCGCG
GCTTCGACCGAGAGGGGAACTTCGTCTACGGGAACCAGCGCGACGTGCCC
TACAAGATGCGAAGGGTCGCCGCGGGGGGACCCCTGGAGTGGACCCTGGG
GGCGCGGCATCGGACCAAGGAAGCGTACGCCGAAAAAATGTCCGCCATCG
GGGTGACCCCGGGGCAGCGGCTAGGACCCCCCGTTAGGCGACGACCTGCT
GCCGGCACACCGGCCGGCACGGGCAGCGGCGGCGGCGGCTAAATGTCCGG
GAGAATTTCAGGGCCGGCGGGGAAACAGGACGCGCACGGGGATGCAGTTC
CCGAGCGAGGGGCGGATGGAGACGGCGCAACAGCGGCGGGAGGGGGGCCT
CCTGATGGGAATTCCTTCGTCGGGCTGATGGGGGAGGACGACAGCGGGAC
GTGGATCGAGTCGCAGAACGTCGACGGCCTCGAGATCTTGGTCAAGGACG
ACCTCAGGCTGTGGCCGGACCGCCTGTGGGTCAACGACCGCGGCTTCGAC
CGAGAGGGGAACTTCGTCTACGGGAACCAGCGCGACGTGCCCTACAAGAT
GCGAAGGGTCGCCGCGGGGGGACCCCTGGAGTGGACCCTGGGGGCGCGGC
ATCGGACCAAGGAAGCGTACGCCGAAAAAATGTCCGCCATCGGGGTGACC
CCGGGGCAGCGGCTAGGACCCCCCGTTAGGCGACGACCTGCTGCCGGCAC
ACCGGCCGGCACGGGCAGCGGCGGCGGCGGCTAA
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