mRNA_E-fasciculatus_F_contig15837.4008.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15837.4008.1 vs. uniprot
Match: A0A6H5K4B9_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B9_9PHAE) HSP 1 Score: 387 bits (995), Expect = 3.000e-124 Identity = 213/258 (82.56%), Postives = 218/258 (84.50%), Query Frame = 1
Query: 1 SKRLPPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPTGSTAEGSMWRGLADSLMRLVRPLPLLQTRSAIAGGWVAPQKCVVWTGGGVNGGGEGNERELRALAEVLLAENV-------PLVEG-----------SKELRSLLLSSGCATFSTTPAFVRQLFRRLASPAPGRLAARGVGSGAVGANGTASLRSGNPSARSTCIL 720
SKRLPPAPRGAAYCFLPLPV+TGLPVHVNG RDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKA+LGGG AYEALWPTGSTAEGSMWRGLADSLMRLVRPLPLL+TRS IAGGWVAPQKCVVWTGG ERELRALAEVLLAENV V G SKELRSLLLSSGCATFSTTPAFVRQLF++LASPAPGRLAARGVGSGAVGANGTASLRSGNPSARSTCIL
Sbjct: 42 SKRLPPAPRGAAYCFLPLPVLTGLPVHVNG--------RDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKASLGGGAAYEALWPTGSTAEGSMWRGLADSLMRLVRPLPLLKTRSPIAGGWVAPQKCVVWTGGXXXXXXXXRERELRALAEVLLAENVRGIHEIPXTVAGREVNGSCEPWPSKELRSLLLSSGCATFSTTPAFVRQLFKKLASPAPGRLAARGVGSGAVGANGTASLRSGNPSARSTCIL 291
BLAST of mRNA_E-fasciculatus_F_contig15837.4008.1 vs. uniprot
Match: A0A835YL62_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA) HSP 1 Score: 159 bits (403), Expect = 5.060e-41 Identity = 93/184 (50.54%), Postives = 114/184 (61.96%), Query Frame = 1
Query: 25 RGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWP----TGST-----AEGSMWRGLADSLMRLVRPLPLLQTRSAIAGGWVAPQKCVVWTGGGVNGGGEGNERELRALAEVLLAENVPLVEGSKELRSLLLSSG 549
RG AYCFLPLPV TGLPVHVNGYFELSSNRRDIW+G DM GDG +RA WN ALVEE+AASCY R+L+ + LG AY+ LWP GS A +W G + LVR P+LQT G WV P+ VV GG ++ + L+AL LL E VPLV+ ++ ++ L +G
Sbjct: 375 RGRAYCFLPLPVFTGLPVHVNGYFELSSNRRDIWTGDDMAGDGAVRAQWNAALVEEIAASCYARLLLGVRTELGDRAAYDTLWPPLPSAGSVTSAVGAPAGVWAGCVAVFVALVRAQPVLQTAHE-KGHWVTPRDAVV-LGGALDDAPDAERCRLKAL---LLGEGVPLVDCARAIQRGLAHAG 553
BLAST of mRNA_E-fasciculatus_F_contig15837.4008.1 vs. uniprot
Match: W7U1E4_9STRA (Ubiquitin-associated/translation elongation factor EF1B n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1E4_9STRA) HSP 1 Score: 148 bits (374), Expect = 3.840e-37 Identity = 88/201 (43.78%), Postives = 115/201 (57.21%), Query Frame = 1
Query: 28 GAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPTGSTAEGSMWRGLADSLMRLVRPLPLLQTR--SAIAGGWVAPQKCVVWTGGGVNGGGEGN----ERELRALAEVLLAENVPLVEGS-KELRSLLLSSGCATFSTTPAFVRQLFRRLAS 609
G AYCFLPLPV TGLPVHVNG+FELSSNRRDIW G DMVG+G+LRA WN+AL+ ++A CY+R L A G G Y++LWP G W + D+ V PLPLL T G W++P+ V+ + +G ++ +L ++L+ E+VP+V L +L TPAFVR FR AS
Sbjct: 418 GLAYCFLPLPVATGLPVHVNGFFELSSNRRDIWWGDDMVGEGQLRAEWNRALLCDVAVPCYSRFLSLAAERCGAGALYDSLWPV--KGNGPAWVAMIDAFFEAVSPLPLLHTPLGEQEKGVWISPRDAVLIPSAEGSRNKDGTIIFCRDDISSLEKILVEEDVPVVHTYLTALHEVLEKRKVVARIATPAFVRTHFRTPAS 616
BLAST of mRNA_E-fasciculatus_F_contig15837.4008.1 vs. uniprot
Match: A0A7S2VVU2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVU2_9STRA) HSP 1 Score: 146 bits (369), Expect = 1.770e-36 Identity = 86/202 (42.57%), Postives = 113/202 (55.94%), Query Frame = 1
Query: 7 RLPPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPTGSTAE---GSMWRGLADSLMRLVRPLPLLQTRSAIAGGWVAPQKCVVWTGGGVNGGGEGNERELRALAEVLLAENVPLVEGSKE-LRSLLLSSGCATFSTTPAFVRQLFRR 600
R PP P G AYCFLPLPV TGLPVHVNGYFELSSNRRD+W G DM GDG RA WN AL+ ++AA CY+R++ K + G YE L P + G +W + D+ V P+L + S WV+P V+ + + LA + L +PLV + LR LL+ A ++TTP FVR+ ++R
Sbjct: 7 RPPPPPIGKAYCFLPLPVETGLPVHVNGYFELSSNRRDVWWGDDMAGDGRARAEWNLALIRDIAAVCYSRMVEKTKGKMREGRVYEELMPKVDEEKKPLGQLWEIMLDAFYSNVSNSPVLYSTSTSQ--WVSPSSSVL----------PSDPTDTTLLAILALEPTLPLVTFKDDALRKTLLNRNAAQYTTTPEFVREFYKR 196
BLAST of mRNA_E-fasciculatus_F_contig15837.4008.1 vs. uniprot
Match: A0A2V0PDE2_9CHLO (RING-type domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PDE2_9CHLO) HSP 1 Score: 138 bits (348), Expect = 1.150e-33 Identity = 87/188 (46.28%), Postives = 106/188 (56.38%), Query Frame = 1
Query: 28 GAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPTGSTAEGSMWRGLADSLMRLVRPLPLLQTRSAIAGGWVAPQKCVVWTGGGVNGGGEGNERELRALAEVLLAENVPLVEGSKELRSLLLS-SGCATFSTTPAFVRQ 588
G A+CFLPLPV TGLPV VNGYFELSSNRRD+W G DM G G RA WN+AL+ +AA Y +L AA LG G Y ALWP S A + W+ + + L RL PL+ R+A A W+AP CV + G GG EG+ L E LLA V L + + + + G TPA RQ
Sbjct: 385 GRAFCFLPLPVSTGLPVAVNGYFELSSNRRDVWHGGDMAGAGAARARWNEALLRLVAAPAYAALLAAAARELGPGPQYGALWP--SAAASAPWQLVVEELYRLAARRPLVFCRAAGAARWMAPADCVFFPAGQRGGGEEGD-----GLVEGLLALGVALPDLPPAVVDTMQAYMGVKPALATPALARQ 565
BLAST of mRNA_E-fasciculatus_F_contig15837.4008.1 vs. uniprot
Match: A0A7S0CTG0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CTG0_9EUKA) HSP 1 Score: 129 bits (324), Expect = 1.150e-32 Identity = 69/129 (53.49%), Postives = 84/129 (65.12%), Query Frame = 1
Query: 28 GAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPTGSTAEGSMWRGLADSLMRLVRPLPLLQTRSAIAGG-WVAPQKCVV 411
G+A+CFLPLPV TGLPVHVNGYFELS+NRRDIW GSDM GDGE+R+ WN+ L+E++ AS Y +L A LG Y ALWP T+E WR LA + R V P+L + G W P+ VV
Sbjct: 102 GSAFCFLPLPVRTGLPVHVNGYFELSANRRDIWWGSDMTGDGEMRSKWNRLLIEDVVASAYAHILYEASKILGYQKDYFALWPENPTSEA--WRVLAIEVYRKVLRFPVLYCQPVSREGYWCLPKDAVV 228
BLAST of mRNA_E-fasciculatus_F_contig15837.4008.1 vs. uniprot
Match: A0A2K1K3C6_PHYPA (RING-type domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K3C6_PHYPA) HSP 1 Score: 134 bits (337), Expect = 3.360e-32 Identity = 77/162 (47.53%), Postives = 99/162 (61.11%), Query Frame = 1
Query: 28 GAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPTGSTAEGSMWRGLADSLMRLV--RPLPLLQTRSAIAGGWVAPQKCVVWTGGGVNGGGEGNERELRALAEVLLAENVPLV 507
G A+CFLPLPV GLPVHVNGYFELSSNRRDIW G DM G G+LRA+WN+ L+E++AA Y R+LV A LG + ALWPTGS E W L + + V LP+L T +AI G WV+P++ V + + E R L + L +P++
Sbjct: 1769 GRAFCFLPLPVKIGLPVHVNGYFELSSNRRDIWYGDDMAGGGKLRADWNRCLLEDVAAPAYARLLVEAARELGATAMFHALWPTGSVHE--PWYSLLKQVYKSVVELDLPVLYT-NAIQGKWVSPKRAVF---------PDNSFAEARELGDALAHAGLPII 1918
BLAST of mRNA_E-fasciculatus_F_contig15837.4008.1 vs. uniprot
Match: A0A7S3QAL4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAL4_9STRA) HSP 1 Score: 134 bits (337), Expect = 3.370e-32 Identity = 83/202 (41.09%), Postives = 117/202 (57.92%), Query Frame = 1
Query: 28 GAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAA-KAALGGGGAYEALWPTGSTAEGSMWRGLADSLMRLVRPLPLLQTRSAIAGGWVAPQKCVVWTGGGVNGGGEGNERELRALAEVLLAENVPLVE-GSKELRSLLLSSGCATFSTTPAFVRQLFRRLASPAPGRL 627
G AYCFLPLPV T LP+HVNGYFELSSNRRD+W G DM GDG+ RA WNK++V+++A Y R++ AA + L +E L+P S + W LA+ + +R +P+L + A WVAP K ++ ++ L E+L + +PLV S EL++LLL T +TTP +R+ + R + A G L
Sbjct: 365 GNAYCFLPLPVRTKLPIHVNGYFELSSNRRDVWWGDDMAGDGKARAEWNKSIVQDIAGPSYVRLVEAAIRNNLVSSITFELLFPQRSLS--GPWLVLANRFLNGIRDVPVLHSACASPQNWVAPSKSLLM-----------HDENDTKLIEILSKDKLPLVLIKSAELKALLLERKTCTNTTTPELLRRYYSRRKTIANGSL 553
BLAST of mRNA_E-fasciculatus_F_contig15837.4008.1 vs. uniprot
Match: A0A0D2LK56_9CHLO (Sacsin n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LK56_9CHLO) HSP 1 Score: 133 bits (334), Expect = 8.310e-32 Identity = 69/127 (54.33%), Postives = 83/127 (65.35%), Query Frame = 1
Query: 28 GAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPTGSTAEGSMWRGLADSLMRLVRPLPLLQTRSAIAGGWVAPQKCV 408
G A+CFLPLPV TGLPV VNGYFELSSNRRD+W G DM G G RA WN+AL+ +AA Y +L A LG G AY ALWP+ A + W+ + L RL PL+ +R+A AG W+AP CV
Sbjct: 368 GRAFCFLPLPVATGLPVAVNGYFELSSNRRDVWHGEDMAGAGAARARWNEALLRLVAAPAYASLLAAVAQKLGPGAAYNALWPSFDAA--APWQAVVLELSRLAARRPLVWSRAAGAGRWMAPADCV 492
BLAST of mRNA_E-fasciculatus_F_contig15837.4008.1 vs. uniprot
Match: A0A7S1TYE3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYE3_9STRA) HSP 1 Score: 131 bits (330), Expect = 2.850e-31 Identity = 81/197 (41.12%), Postives = 104/197 (52.79%), Query Frame = 1
Query: 28 GAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDGELRANWNKALVEELAASCYTRVLVAAKAALGGGGAYEALWPTGSTAE--GSMWRGLADSLMRLVRPLPLLQTRSAIAG-GWVAPQKCVVWTGGGVNGGGEGNERELRALAEV----LLAENVPLVEGSKELRSLLLSSGCATFSTTPAFVRQLFR 597
G A+CFLPLPVVT LPVHVNGYFELSSNRRDIW G D+ G+G RA WN+AL+ A CY ++LV A LG AY LWP A+ W L ++ R + A G V P+ CV+ T V + E+ + +V L VPL LR+ L+ +GC +PAF+R L +
Sbjct: 2078 GRAFCFLPLPVVTNLPVHVNGYFELSSNRRDIWYGEDLAGEGRRRAIWNEALLRHAIAPCYAKLLVGALRHLGPQSAYYELWPVEGRAKTRAQTWDMLRSAVFVAARQQDTIWGGVGGASHGAVKPEACVITTDSSVYDASDPREQARITVQDVVNRTLERAQVPLARVPPALRAALVEAGCCADEASPAFMRNLLK 2274 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15837.4008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15837.4008.1 >prot_E-fasciculatus_F_contig15837.4008.1 ID=prot_E-fasciculatus_F_contig15837.4008.1|Name=mRNA_E-fasciculatus_F_contig15837.4008.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=240bp SKRLPPAPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRRDIWSGSDMVGDback to top mRNA from alignment at E-fasciculatus_F_contig15837:50..1923+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15837.4008.1 ID=mRNA_E-fasciculatus_F_contig15837.4008.1|Name=mRNA_E-fasciculatus_F_contig15837.4008.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1874bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15837:50..1923+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15837:50..1923+ >mRNA_E-fasciculatus_F_contig15837.4008.1 ID=mRNA_E-fasciculatus_F_contig15837.4008.1|Name=mRNA_E-fasciculatus_F_contig15837.4008.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1440bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15837:50..1923+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |