mRNA_E-fasciculatus_F_contig10024.40.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10024.40.1
Unique NamemRNA_E-fasciculatus_F_contig10024.40.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10024.40.1 vs. uniprot
Match: A0A6H5K946_9PHAE (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K946_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.630e-21
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 GCLFDSPWLRLSHPNYTHRMNHYENDIADRLQHHLLHSGTPSGGSSSSPAIV 156
            GCLFDSPWLRLSHPNYTHRM HYEN++ADRLQHHLLHSGTPS GSSSSPAI+
Sbjct:  388 GCLFDSPWLRLSHPNYTHRMIHYENEVADRLQHHLLHSGTPSSGSSSSPAII 439
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10024.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K946_9PHAE3.630e-2190.38Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10024contigE-fasciculatus_F_contig10024:481..1925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue6e-17
Seed eggNOG ortholog2880.D7FY67
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1445
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10024.40.1prot_E-fasciculatus_F_contig10024.40.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10024 538..783 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.5771987-UTR-E-fasciculatus_F_contig10024:480..5371622927504.5771987-UTR-E-fasciculatus_F_contig10024:480..537Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10024 481..537 +
1695995567.2360146-UTR-E-fasciculatus_F_contig10024:480..5371695995567.2360146-UTR-E-fasciculatus_F_contig10024:480..537Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10024 481..537 +
1622927504.6086614-UTR-E-fasciculatus_F_contig10024:783..19251622927504.6086614-UTR-E-fasciculatus_F_contig10024:783..1925Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10024 784..1925 +
1695995567.258581-UTR-E-fasciculatus_F_contig10024:783..19251695995567.258581-UTR-E-fasciculatus_F_contig10024:783..1925Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10024 784..1925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.5944884-CDS-E-fasciculatus_F_contig10024:537..7831622927504.5944884-CDS-E-fasciculatus_F_contig10024:537..783Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10024 538..783 +
1695995567.2484546-CDS-E-fasciculatus_F_contig10024:537..7831695995567.2484546-CDS-E-fasciculatus_F_contig10024:537..783Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10024 538..783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10024.40.1

>prot_E-fasciculatus_F_contig10024.40.1 ID=prot_E-fasciculatus_F_contig10024.40.1|Name=mRNA_E-fasciculatus_F_contig10024.40.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=82bp
MNHYENDIADRLQHHLLHSGTPSGGSSSSPAIVRSAGISASSSGGGSIIG
SERGAASEAVRRDSRPGAGEVAAGSVRCDVR*
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mRNA from alignment at E-fasciculatus_F_contig10024:481..1925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10024.40.1 ID=mRNA_E-fasciculatus_F_contig10024.40.1|Name=mRNA_E-fasciculatus_F_contig10024.40.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1445bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10024:481..1925+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTTGCCTTTTCGACAGCCCCTGGCTACGGCTGTCGCACCCCAACTACAC
GCACCGGATGAACCACTACGAGAACGACATCGCGGATCGCCTGCAGCACC
ACCTGCTCCACAGCGGCACCCCAAGCGGCGGGTCTTCCTCTTCTCCTGCT
ATCGTGAGAAGCGCGGGTATCAGTGCAAGCAGCAGCGGGGGCGGCAGCAT
CATCGGCAGTGAGAGGGGGGCGGCGTCAGAAGCTGTGCGGCGAGATTCTA
GGCCGGGAGCGGGGGAAGTGGCGGCGGGGAGCGTTCGGTGTGACGTGCGA
TGACACCCTGTGCTCTGGACCACGCCACGTGGCCCCCTCGGAACCGTGCT
ACAGCAGTATTGTAGTGGCCTGGATATATCGCGGTGCGGTTCCCGATAAA
ATCCCTTGGCACAAGCTGCAGCCTACTCGATGCCCCCGCTCTTCGCCGCA
GCAACCAACAGATCTTGATGGATGCTAGACTTATTCAGGGACCTTCCCCC
AAAGCGCGGGTCCCGATATAACGCGGTGACTTTTTCTGTCACTTCACCTC
GCTATAATCGGGACCATCACTGGTGCTGTGACTTACGTATGTAGTCTTGC
CCGGCAAAGGGACTGGCTTAGGTAAGGGAGCAAGCTGGTTGTCTACGCGC
CGGCGCCCCCGCTCGAAAGGGCATGCTTGCGCTTTCGTGTGTAGAGAGGG
AAGTAGAGACAGAGAGAGTGAGAGCGAGAGTGAGGGTGGAAGAGATTAAG
TGTGTGTGATTCAGAGAAAGAGAGAGGGAGAGAGAGAAAAAGAGAGAGGT
AGAGGCCATACAGACTGAGGCAGAGAGAGCGAGAAACATGACCACCCTAT
AGACAGGGCATGTTTTCTTGGTTGCACGCACCCGAGGGTGGATTACTCGC
GCCGTGGTTTCTAGTCGTACAGTAGCCTTGGGTAGAGTAGAAGTCCTGGT
GGAGATGATGTGGATGCAGTAGTGGAGTGTATACTGGTCAGCATGTAAGC
CCCCCTCTCCAGGGTGAAGTGAAGTGTCGTCATCCCCGCCCGGCCGTAGT
GTAATGGAAACAGGGGGCCGAAGGCAATTCGACCCTTGTTAGAACCCCCA
TCAAAGTGCATTGAAAGCTGTTATGCCTTGCCAAGTGTCGATATGGCGCA
TGTGCTAGCATCCTCGGCAAAACTGCTGTGGTATTGACGGGGACGGCCCA
TGCCACCAGTTCTTGGAAGAAAACTCGTGTTGGTGCGTGAATTGTTGGTA
CAGCGGTGGGGGTCTCGGTTGAGCGCCCCCCCCATTTAGCGACATGCCCT
ATTTAGCGACCACAAAACCCCGTGGCACCGCCGCACCCCGGTAGTTTGGT
TTAGCGACCTGCCCTGAATACTGGCCACATTTCGTCGTGACGGTCGCTAA
CCCGCCCCCCTCACTGTACATTGCCATGTGGGTTAAAGAGGTTCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10024:481..1925+

>mRNA_E-fasciculatus_F_contig10024.40.1 ID=mRNA_E-fasciculatus_F_contig10024.40.1|Name=mRNA_E-fasciculatus_F_contig10024.40.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=492bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10024:481..1925+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACCACTACGAGAACGACATCGCGGATCGCCTGCAGCACCACCTGCT
CCACAGCGGCACCCCAAGCGGCGGGTCTTCCTCTTCTCCTGCTATCGTGA
GAAGCGCGGGTATCAGTGCAAGCAGCAGCGGGGGCGGCAGCATCATCGGC
AGTGAGAGGGGGGCGGCGTCAGAAGCTGTGCGGCGAGATTCTAGGCCGGG
AGCGGGGGAAGTGGCGGCGGGGAGCGTTCGGTGTGACGTGCGATGAATGA
ACCACTACGAGAACGACATCGCGGATCGCCTGCAGCACCACCTGCTCCAC
AGCGGCACCCCAAGCGGCGGGTCTTCCTCTTCTCCTGCTATCGTGAGAAG
CGCGGGTATCAGTGCAAGCAGCAGCGGGGGCGGCAGCATCATCGGCAGTG
AGAGGGGGGCGGCGTCAGAAGCTGTGCGGCGAGATTCTAGGCCGGGAGCG
GGGGAAGTGGCGGCGGGGAGCGTTCGGTGTGACGTGCGATGA
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