mRNA_E-fasciculatus_F_contig15797.3986.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15797.3986.1
Unique NamemRNA_E-fasciculatus_F_contig15797.3986.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15797.3986.1 vs. uniprot
Match: D8LGE8_ECTSI (EDR2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGE8_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 1.990e-62
Identity = 96/105 (91.43%), Postives = 99/105 (94.29%), Query Frame = 1
Query:   31 MEVGATVPQADCPSTDGAGMPPHSWSQVDAEKFMVRHGPNYSKSKRKGRNAGGSFYEARAMDWYHCTRKLDGVAKLAAAEGLPEAKFSHPSVPSLLVVNVQLPME 345
            MEV ATVPQ DCPS DGAGMPPHSWSQ+DAEKFMVRHGPNYSK+KRKGRNAGGSFYEARAMDWY  T K+DGVAKLAAAEGLPEAKFSHPSVPSLLVVNVQLPME
Sbjct:    1 MEVRATVPQVDCPSADGAGMPPHSWSQLDAEKFMVRHGPNYSKNKRKGRNAGGSFYEARAMDWYRGTGKVDGVAKLAAAEGLPEAKFSHPSVPSLLVVNVQLPME 105          
BLAST of mRNA_E-fasciculatus_F_contig15797.3986.1 vs. uniprot
Match: A0A835ZBF7_9STRA (EDR2_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.690e-14
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   40 GATVPQADCPSTDGAGMPPHSWSQVDAEKFMVRHGPNYSKSKRKGRNAGGSFYEARAMDWYHCT-RKLDGVAKLAAAEGLPEAKFSHPSVPSLLVVNVQLPME 345
            GA++PQ    +  G     H W+   A  FMVRHGPNY +   K  +A  + YE  A+DW+ C  RK D V         P A   HPS+PS+++VN QLP+E
Sbjct:  170 GASLPQLAAAAAHGEHPLTHCWAPTKASSFMVRHGPNYKRRGLKVPSA-PALYEVVAVDWFTCAGRKADNVGARVLLPAPPHAS-PHPSIPSIIIVNAQLPLE 270          
BLAST of mRNA_E-fasciculatus_F_contig15797.3986.1 vs. uniprot
Match: A0A7S3BXI5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BXI5_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 3.230e-8
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 1
Query:  100 SWSQVDAEKFMVRHGPNYSKSKRKGRNAGGSFYEARAMDWYHCTRKLDGVAKLAAAEGLPEAKFSHPSVPSLLVVNVQLP 339
            +W+      FMVRHGPNYSK+ RK  +A  S Y+  A+D + C  KL    +L +    PE       +PS LV+++ LP
Sbjct:   60 AWTPCPGPAFMVRHGPNYSKTGRKQPSA-SSLYDVYAVDLFRCPEKLHDPGRLLSLP--PEDTMDKHGIPSNLVLSLLLP 136          
BLAST of mRNA_E-fasciculatus_F_contig15797.3986.1 vs. uniprot
Match: UPI001CC4CE6E (uncharacterized protein LOC122638277 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC4CE6E)

HSP 1 Score: 58.9 bits (141), Expect = 1.030e-7
Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   67 PSTDGAGMPPHSWSQVDAEKFMVRHGPNYSKSKRKGRNAGGSFYEARAMDWYHCTRKLDGVAKLAAAEGLPEAKFSHPSVPSLLVVNVQLP 339
            PS+ G    P  WS V    F +R G NY + KRK   +  S Y    +D + C RK+D +A+      LP  K +H  VPSLL++N+QLP
Sbjct:  305 PSSIGEKPTPGHWSSVSPSIFKLR-GENYFRDKRKSPASNYSPYTPIGVDLFVCPRKIDHIAQHLE---LPTVK-THEKVPSLLIINIQLP 390          
BLAST of mRNA_E-fasciculatus_F_contig15797.3986.1 vs. uniprot
Match: UPI001C4ED429 (uncharacterized protein LOC122075251 isoform X2 n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4ED429)

HSP 1 Score: 58.5 bits (140), Expect = 1.390e-7
Identity = 35/91 (38.46%), Postives = 48/91 (52.75%), Query Frame = 1
Query:   67 PSTDGAGMPPHSWSQVDAEKFMVRHGPNYSKSKRKGRNAGGSFYEARAMDWYHCTRKLDGVAKLAAAEGLPEAKFSHPSVPSLLVVNVQLP 339
            P + G    P  WS +    F +R G NY K KRK      S Y   A+D + C RK++ +A+      LP  K +H  VPSLL++N+QLP
Sbjct:  273 PCSTGEKPTPGCWSSISPSVFKLR-GENYFKDKRKSPAPDCSPYTLIAVDLFVCARKINHIAQHVE---LPSVK-AHEKVPSLLIINIQLP 358          
BLAST of mRNA_E-fasciculatus_F_contig15797.3986.1 vs. uniprot
Match: A0A0L9TC24_PHAAN (EDR2_C domain-containing protein n=6 Tax=Vigna TaxID=3913 RepID=A0A0L9TC24_PHAAN)

HSP 1 Score: 57.0 bits (136), Expect = 4.700e-7
Identity = 34/82 (41.46%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   94 PHSWSQVDAEKFMVRHGPNYSKSKRKGRNAGGSFYEARAMDWYHCTRKLDGVAKLAAAEGLPEAKFSHPSVPSLLVVNVQLP 339
            P SWS V    F +R G N+ + K+K      S YE   +D + C RK+D +AK      L E    H +VPSLL+VN+QLP
Sbjct:  190 PGSWSVVSPSVFSLR-GENFFRDKQKCPAPDFSPYEPIGVDLFACPRKIDHIAKHLELPPLKE----HENVPSLLIVNIQLP 266          
BLAST of mRNA_E-fasciculatus_F_contig15797.3986.1 vs. uniprot
Match: A0A2P6R2N7_ROSCH (EDR2_C domain-containing protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R2N7_ROSCH)

HSP 1 Score: 56.2 bits (134), Expect = 8.880e-7
Identity = 34/82 (41.46%), Postives = 44/82 (53.66%), Query Frame = 1
Query:   94 PHSWSQVDAEKFMVRHGPNYSKSKRKGRNAGGSFYEARAMDWYHCTRKLDGVAKLAAAEGLPEAKFSHPSVPSLLVVNVQLP 339
            P SWS++    F +R G NY K K+K      S Y    +D + C RK D +A+      LP  K  H  VPSLL+VN+QLP
Sbjct:  239 PGSWSEISPSIFKLR-GENYFKDKQKYPAPNCSSYVPIGIDMFICPRKRDHIAQYLE---LPSVK-PHDKVPSLLIVNIQLP 315          
BLAST of mRNA_E-fasciculatus_F_contig15797.3986.1 vs. uniprot
Match: A0A7N2R002_QUELO (EDR2_C domain-containing protein n=3 Tax=Fagaceae TaxID=3503 RepID=A0A7N2R002_QUELO)

HSP 1 Score: 55.8 bits (133), Expect = 1.230e-6
Identity = 33/91 (36.26%), Postives = 48/91 (52.75%), Query Frame = 1
Query:   67 PSTDGAGMPPHSWSQVDAEKFMVRHGPNYSKSKRKGRNAGGSFYEARAMDWYHCTRKLDGVAKLAAAEGLPEAKFSHPSVPSLLVVNVQLP 339
            P   G  + P  WS++    F +R G +Y K KRK      S Y    +D + C +K+D +A+      LP  K ++  VPSLL+VN+QLP
Sbjct:  287 PRCTGEKLTPGCWSEIPPSTFKLR-GESYFKDKRKSPAPNNSPYTPIGVDLFVCPKKIDHIAQHIE---LPNVK-ANDKVPSLLIVNIQLP 372          
BLAST of mRNA_E-fasciculatus_F_contig15797.3986.1 vs. uniprot
Match: A0A835Z8Q7_9STRA (EDR2_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.700e-6
Identity = 37/106 (34.91%), Postives = 53/106 (50.00%), Query Frame = 1
Query:   37 VGATVPQADCPSTDGAGMPPHSWSQVDAEKFMVRHGPNYSKSKRKGRNAGGSFYEARAMDWYHCTRKLDGVAKL-----AAAEGLPEAKFSHPSVPSLLVVNVQLP 339
            VGA+  + D P       P + WS  DA  F VR    Y KS+ KG +   + Y+ +AMD YH   +++ +        A   G+P     HP +PSL ++NVQLP
Sbjct:  212 VGASYARNDAPEQ----APCNRWSPGDATGFCVRT-KGYCKSREKGPSL-AALYDLKAMDCYHSPYRINDIKSHVRGLDALLAGVPPT--GHPDIPSLFIINVQLP 309          
BLAST of mRNA_E-fasciculatus_F_contig15797.3986.1 vs. uniprot
Match: UPI000CE26EE9 (uncharacterized protein LOC111993041 n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE26EE9)

HSP 1 Score: 55.1 bits (131), Expect = 2.110e-6
Identity = 33/91 (36.26%), Postives = 48/91 (52.75%), Query Frame = 1
Query:   67 PSTDGAGMPPHSWSQVDAEKFMVRHGPNYSKSKRKGRNAGGSFYEARAMDWYHCTRKLDGVAKLAAAEGLPEAKFSHPSVPSLLVVNVQLP 339
            P   G  + P  WS++    F +R G +Y K KRK      S Y    +D + C +K+D +A+      LP  K ++  VPSLL+VN+QLP
Sbjct:   91 PRCMGEKLTPGCWSEIPPSTFKLR-GESYFKDKRKSPAPNNSPYTPIGVDLFVCPKKIDHIAQHIE---LPNVK-ANDKVPSLLIVNIQLP 176          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15797.3986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGE8_ECTSI1.990e-6291.43EDR2_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835ZBF7_9STRA1.690e-1440.78EDR2_C domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S3BXI5_9EUKA3.230e-838.75Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
UPI001CC4CE6E1.030e-739.56uncharacterized protein LOC122638277 n=1 Tax=Telop... [more]
UPI001C4ED4291.390e-738.46uncharacterized protein LOC122075251 isoform X2 n=... [more]
A0A0L9TC24_PHAAN4.700e-741.46EDR2_C domain-containing protein n=6 Tax=Vigna Tax... [more]
A0A2P6R2N7_ROSCH8.880e-741.46EDR2_C domain-containing protein n=1 Tax=Rosa chin... [more]
A0A7N2R002_QUELO1.230e-636.26EDR2_C domain-containing protein n=3 Tax=Fagaceae ... [more]
A0A835Z8Q7_9STRA1.700e-634.91EDR2_C domain-containing protein n=1 Tax=Tribonema... [more]
UPI000CE26EE92.110e-636.26uncharacterized protein LOC111993041 n=1 Tax=Querc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15797contigE-fasciculatus_F_contig15797:521..874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.0
Seed ortholog evalue7.1e-50
Seed eggNOG ortholog2880.D8LGE8
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs2CYY6@1,2S76H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF1336
Ec32 orthologEc-16_003780.1
Exons1
Model size354
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928049.5268269-CDS-E-fasciculatus_F_contig15797:520..8441622928049.5268269-CDS-E-fasciculatus_F_contig15797:520..844Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15797 521..844 -
1695995802.8577335-CDS-E-fasciculatus_F_contig15797:520..8441695995802.8577335-CDS-E-fasciculatus_F_contig15797:520..844Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15797 521..844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928049.5437453-UTR-E-fasciculatus_F_contig15797:844..8741622928049.5437453-UTR-E-fasciculatus_F_contig15797:844..874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15797 845..874 -
1695995802.86935-UTR-E-fasciculatus_F_contig15797:844..8741695995802.86935-UTR-E-fasciculatus_F_contig15797:844..874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15797 845..874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15797.3986.1prot_E-fasciculatus_F_contig15797.3986.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15797 521..844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15797.3986.1

>prot_E-fasciculatus_F_contig15797.3986.1 ID=prot_E-fasciculatus_F_contig15797.3986.1|Name=mRNA_E-fasciculatus_F_contig15797.3986.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
MEVGATVPQADCPSTDGAGMPPHSWSQVDAEKFMVRHGPNYSKSKRKGRN
AGGSFYEARAMDWYHCTRKLDGVAKLAAAEGLPEAKFSHPSVPSLLVVNV
QLPMEVR*
back to top

mRNA from alignment at E-fasciculatus_F_contig15797:521..874-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15797.3986.1 ID=mRNA_E-fasciculatus_F_contig15797.3986.1|Name=mRNA_E-fasciculatus_F_contig15797.3986.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=354bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15797:521..874- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAGAGCAGTGCGTGCTCTTCTTTTTGCCATGGAGGTCGGAGCGACGGT GCCGCAGGCCGACTGCCCGTCCACGGACGGCGCGGGCATGCCGCCGCACA GCTGGTCCCAGGTCGACGCGGAGAAGTTCATGGTACGGCACGGGCCCAAC TATTCCAAGAGTAAGCGAAAGGGCAGGAACGCGGGCGGTTCGTTCTATGA GGCGAGGGCGATGGACTGGTATCACTGCACCAGGAAGCTGGACGGGGTGG CCAAGCTGGCGGCGGCGGAGGGGCTGCCCGAGGCGAAGTTCAGCCACCCG TCGGTGCCGTCGCTGCTGGTGGTGAACGTGCAGCTGCCGATGGAGGTGAG ATAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15797:521..874-

>mRNA_E-fasciculatus_F_contig15797.3986.1 ID=mRNA_E-fasciculatus_F_contig15797.3986.1|Name=mRNA_E-fasciculatus_F_contig15797.3986.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15797:521..874- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGTCGGAGCGACGGTGCCGCAGGCCGACTGCCCGTCCACGGACGG
CGCGGGCATGCCGCCGCACAGCTGGTCCCAGGTCGACGCGGAGAAGTTCA
TGGTACGGCACGGGCCCAACTATTCCAAGAGTAAGCGAAAGGGCAGGAAC
GCGGGCGGTTCGTTCTATGAGGCGAGGGCGATGGACTGGTATCACTGCAC
CAGGAAGCTGGACGGGGTGGCCAAGCTGGCGGCGGCGGAGGGGCTGCCCG
AGGCGAAGTTCAGCCACCCGTCGGTGCCGTCGCTGCTGGTGGTGAACGTG
CAGCTGCCGATGGAGGTGAGATAAATGGAGGTCGGAGCGACGGTGCCGCA
GGCCGACTGCCCGTCCACGGACGGCGCGGGCATGCCGCCGCACAGCTGGT
CCCAGGTCGACGCGGAGAAGTTCATGGTACGGCACGGGCCCAACTATTCC
AAGAGTAAGCGAAAGGGCAGGAACGCGGGCGGTTCGTTCTATGAGGCGAG
GGCGATGGACTGGTATCACTGCACCAGGAAGCTGGACGGGGTGGCCAAGC
TGGCGGCGGCGGAGGGGCTGCCCGAGGCGAAGTTCAGCCACCCGTCGGTG
CCGTCGCTGCTGGTGGTGAACGTGCAGCTGCCGATGGAGGTGAGATAA
back to top