mRNA_E-fasciculatus_F_contig10496.397.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10496.397.1
Unique NamemRNA_E-fasciculatus_F_contig10496.397.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10496.397.1 vs. uniprot
Match: D8LRZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRZ0_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 1.190e-58
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 
Query:    1 AFECFDAAAAIAPRDSDLFLHRGQGHLLANDFRKATADLRRSVELCPTMPISRAAWGVALFKLATAAELPSPSSLSKCVQVLEESRELFPENPEVLFFFAEV 306
            AFECFDAAAAIAPRDSDLFLHRGQGHLLANDFRKATADLRRSVELCPTMPISRAAWGVALFKLATAAELPSPSSLSKCVQVLEESRELFPENPEVLFFFAEV
Sbjct:  692 AFECFDAAAAIAPRDSDLFLHRGQGHLLANDFRKATADLRRSVELCPTMPISRAAWGVALFKLATAAELPSPSSLSKCVQVLEESRELFPENPEVLFFFAEV 793
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BLAST of mRNA_E-fasciculatus_F_contig10496.397.1 vs. uniprot
Match: A0A835YUV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.620e-6
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 AFECFDAAAAIAPRDSDLFLHRGQGHLLANDFRKATADLRRSVELCPTMPISRAAWGVALFKLATA 198
            A E F  A    P D+D++LHRGQ HLL N+ + A+ DL+R+        +++A++G++LFK A A
Sbjct:  802 ALEWFRLALEADPSDADVYLHRGQYHLLTNNPKAASFDLQRAAGFAEAPAVAQASYGISLFKRAAA 867
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10496.397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRZ0_ECTSI1.190e-58100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUV6_9STRA2.620e-640.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10496contigE-fasciculatus_F_contig10496:105..1652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.8
Seed ortholog evalue4.7e-51
Seed eggNOG ortholog2880.D8LRZ0
Preferred nameTOMM70A
KEGG koko:K00738,ko:K17768
KEGG TC3.A.8.1
KEGG ReactionR05987
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00075
GOsGO:0001101,GO:0001558,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005742,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010611,GO:0010614,GO:0010721,GO:0014070,GO:0014741,GO:0014743,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016202,GO:0017038,GO:0019867,GO:0022804,GO:0022857,GO:0022884,GO:0030150,GO:0030308,GO:0030943,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0040008,GO:0042221,GO:0042277,GO:0042493,GO:0042886,GO:0042887,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043502,GO:0044057,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045595,GO:0045596,GO:0045843,GO:0045926,GO:0046620,GO:0046621,GO:0046907,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048634,GO:0048635,GO:0048638,GO:0048640,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051093,GO:0051128,GO:0051147,GO:0051148,GO:0051153,GO:0051154,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051241,GO:0051641,GO:0051649,GO:0055021,GO:0055022,GO:0055024,GO:0055026,GO:0055085,GO:0060284,GO:0060420,GO:0061024,GO:0061050,GO:0061052,GO:0061117,GO:0065002,GO:0065007,GO:0070201,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090087,GO:0090150,GO:0090151,GO:0090257,GO:0097066,GO:0097068,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:1901698,GO:1901700,GO:1901861,GO:1901862,GO:1904386,GO:1904589,GO:1904591,GO:1904680,GO:1904951,GO:1905207,GO:1905208,GO:1990542,GO:2000026,GO:2000725,GO:2000726
EggNOG free text desc.protein transmembrane transport
EggNOG OGsKOG0547@1,KOG0547@2759
EC2.4.1.145
COG Functional cat.S
CAZyGT54
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Exons3
Model size306
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10496.397.1prot_E-fasciculatus_F_contig10496.397.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10496 105..1652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927546.5290809-CDS-E-fasciculatus_F_contig10496:104..2031622927546.5290809-CDS-E-fasciculatus_F_contig10496:104..203Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10496 105..203 -
1695995589.0067866-CDS-E-fasciculatus_F_contig10496:104..2031695995589.0067866-CDS-E-fasciculatus_F_contig10496:104..203Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10496 105..203 -
1622927546.5393527-CDS-E-fasciculatus_F_contig10496:531..6731622927546.5393527-CDS-E-fasciculatus_F_contig10496:531..673Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10496 532..673 -
1695995589.0179603-CDS-E-fasciculatus_F_contig10496:531..6731695995589.0179603-CDS-E-fasciculatus_F_contig10496:531..673Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10496 532..673 -
1622927546.5528927-CDS-E-fasciculatus_F_contig10496:1587..16521622927546.5528927-CDS-E-fasciculatus_F_contig10496:1587..1652Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10496 1588..1652 -
1695995589.0257533-CDS-E-fasciculatus_F_contig10496:1587..16521695995589.0257533-CDS-E-fasciculatus_F_contig10496:1587..1652Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10496 1588..1652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10496.397.1

>prot_E-fasciculatus_F_contig10496.397.1 ID=prot_E-fasciculatus_F_contig10496.397.1|Name=mRNA_E-fasciculatus_F_contig10496.397.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
AFECFDAAAAIAPRDSDLFLHRGQGHLLANDFRKATADLRRSVELCPTMP
ISRAAWGVALFKLATAAELPSPSSLSKCVQVLEESRELFPENPEVLFFFA
EV
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mRNA from alignment at E-fasciculatus_F_contig10496:105..1652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10496.397.1 ID=mRNA_E-fasciculatus_F_contig10496.397.1|Name=mRNA_E-fasciculatus_F_contig10496.397.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1548bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10496:105..1652- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGTTTGAGTGTTTCGATGCGGCAGCGGCGATCGCCCCTCGAGATTCGGA
CCTCTTCCTCCACCGGTAAGTGTTGTGTGTGTGTGTGTGTGTATTTTCCG
GTGACATTCATGACGCGGGAGATTGTTGGCTGATGCATGAATAGTGGTAC
GATGGTATGTGCTTGTGCATACGTTTTATATCTTTATTGTCTTTGGTATA
TCTGAAGTACTGTGTCCTTGGTATAGGGATGGACACAGAATCGAATCCAA
AGCTACTCCTCAAAGCCTCAGTCAAGACCCCCCCACAGAGACGATTCCAA
TGGACTGGCTGATGCAGGCCTCGCTGGTCCCTCGCGCGTCGGCATGGATT
ACGGCTAATGTCTGAATGTTGCTCCCCAATGCATTCTGTTATGTCAGCGA
AAGCTTGGGGAAGAGGTGTTAGAAAGATGAACACATTTCGGTAGTAGTTG
CGAGCGGATTGGGGTGGGGTGGGTGACAGATGCGGGGAACTGGTGGAGAA
AAGCACGATACACAAGTTTGTGCTTGGAATGCCGCGTAGAGAATGGGACC
TTTGCTACCAAAGCACAGGTAAAAATGTTATGACCACTTCGAGATTGTCT
TCCCCAAATATAAGGTAAATACCAACACGTAATTTTCACCAAAATAAATT
AGCACGTACTTTTGTATTGGAGGTGCAACGTTACATGTAGTACGATACAC
CCCTACCCTATCAACTAGCGTGGTTGTTTTCTCGTCGAGAGTACGCGCGT
GATGTCGGCGGGGGAGGTCTCACCTCACAGAGAGGAATTGATCTATATTT
GCGACATGCTCACGACCAAAATGCCTCCAGCAAGCGGACAGGATCAGGAG
AGTATGTGAAAAGTGCGACATACTACCAACCAGTGTCCTGGATGCTGCAA
TAGTCTGACTGGCATCTTGTTATTTTCTGTTTGTTGATGTAACGTGAATA
TGGCAACCCGCGTGTCTTGGTTGTTGCAGCGGGCAGGGGCATCTGCTGGC
GAACGACTTCAGGAAGGCAACCGCAGACCTAAGGAGGAGCGTGGAGCTTT
GCCCGACGATGCCGATCTCGCGGGCGGCGTGGGGAGTGGCCTTGTTCAAG
CTGGCTACGGCGGCCGAACTGGTGAATCAACGTTTAGCGGCGGCGACGTC
ACAGTAAAGAGGCTCAAGGTTCAGATGGAAAATAGCAGACGAGCACGGTG
TTTTTTTCGGTAGATGAGAATTCACATTTGACCGGAAGCCATACTGGCAG
CAGTAACAACGCCAACAGGCCCCTTCGAACAGAAGGACTCTCTCTCTCTA
TAGACGCTGTTAGGTATATGTACCAAATTTTATTTTGTGGAATGTGTTTT
CAGGTTTTTTAACTCGTCTCGACAATGACCATTTTGTTGCTGTTCCCACC
TAATTTTTGTTTTGTTTGACCCCGTGTGTTTTTTTTGCCCTCTAACAAGC
CGTCTCCGTCATCGCTGTCCAAGTGCGTGCAAGTTTTGGAGGAATCTCGG
GAGCTTTTCCCGGAAAATCCGGAGGTGCTCTTCTTTTTTGCCGAGGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10496:105..1652-

>mRNA_E-fasciculatus_F_contig10496.397.1 ID=mRNA_E-fasciculatus_F_contig10496.397.1|Name=mRNA_E-fasciculatus_F_contig10496.397.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10496:105..1652- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGTTTGAGTGTTTCGATGCGGCAGCGGCGATCGCCCCTCGAGATTCGGA
CCTCTTCCTCCACCGGCGTTTGAGTGTTTCGATGCGGCAGCGGCGATCGC
CCCTCGAGATTCGGACCTCTTCCTCCACCGCGGGCAGGGGCATCTGCTGG
CGAACGACTTCAGGAAGGCAACCGCAGACCTAAGGAGGAGCGTGGAGCTT
TGCCCGACGATGCCGATCTCGCGGGCGGCGTGGGGAGTGGCCTTGTTCAA
GCTGGCTACGGCGGCCGAACTGCGGGCAGGGGCATCTGCTGGCGAACGAC
TTCAGGAAGGCAACCGCAGACCTAAGGAGGAGCGTGGAGCTTTGCCCGAC
GATGCCGATCTCGCGGGCGGCGTGGGGAGTGGCCTTGTTCAAGCTGGCTA
CGGCGGCCGAACTGCCGTCTCCGTCATCGCTGTCCAAGTGCGTGCAAGTT
TTGGAGGAATCTCGGGAGCTTTTCCCGGAAAATCCGGAGGTGCTCTTCTT
TTTTGCCGAGGTACCGTCTCCGTCATCGCTGTCCAAGTGCGTGCAAGTTT
TGGAGGAATCTCGGGAGCTTTTCCCGGAAAATCCGGAGGTGCTCTTCTTT
TTTGCCGAGGTA
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